[INFO] fetching crate umi-core 1.1.0...
[INFO] testing umi-core-1.1.0 against master#562dee4820c458d823175268e41601d4c060588a for pr-154210-2
[INFO] extracting crate umi-core 1.1.0 into /workspace/builds/worker-4-tc1/source
[INFO] started tweaking crates.io crate umi-core 1.1.0
[INFO] finished tweaking crates.io crate umi-core 1.1.0
[INFO] tweaked toml for crates.io crate umi-core 1.1.0 written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate umi-core 1.1.0 on toolchain 562dee4820c458d823175268e41601d4c060588a
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate umi-core 1.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded buffer-redux v1.1.0
[INFO] [stderr]   Downloaded bzip2 v0.4.4
[INFO] [stderr]   Downloaded liblzma v0.3.6
[INFO] [stderr]   Downloaded rust-htslib v1.0.0
[INFO] [stderr]   Downloaded syn v2.0.115
[INFO] [stderr]   Downloaded needletail v0.6.3
[INFO] [stderr]   Downloaded libc v0.2.181
[INFO] [stderr]   Downloaded libz-ng-sys v1.1.23
[INFO] [stderr]   Downloaded liblzma-sys v0.3.13
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 0a10a658233f445e381b32c536718f72be5884dfe4a9003bea4960773714985b
[INFO] running `Command { std: "docker" "start" "-a" "0a10a658233f445e381b32c536718f72be5884dfe4a9003bea4960773714985b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "0a10a658233f445e381b32c536718f72be5884dfe4a9003bea4960773714985b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0a10a658233f445e381b32c536718f72be5884dfe4a9003bea4960773714985b", kill_on_drop: false }`
[INFO] [stdout] 0a10a658233f445e381b32c536718f72be5884dfe4a9003bea4960773714985b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 904a22fcb8c508d6af8009ea163820032ecd4b31860f1aadb0e73cbc7dd24a88
[INFO] running `Command { std: "docker" "start" "-a" "904a22fcb8c508d6af8009ea163820032ecd4b31860f1aadb0e73cbc7dd24a88", kill_on_drop: false }`
[INFO] [stderr]    Compiling unicode-ident v1.0.23
[INFO] [stderr]    Compiling libc v0.2.181
[INFO] [stderr]    Compiling stable_deref_trait v1.2.1
[INFO] [stderr]    Compiling litemap v0.8.1
[INFO] [stderr]    Compiling writeable v0.6.2
[INFO] [stderr]    Compiling icu_normalizer_data v2.1.1
[INFO] [stderr]    Compiling memchr v2.8.0
[INFO] [stderr]    Compiling regex-syntax v0.8.9
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling icu_properties_data v2.1.2
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling bitflags v2.11.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling smallvec v1.15.1
[INFO] [stderr]    Compiling proc-macro2 v1.0.106
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling percent-encoding v2.3.2
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling bytecount v0.6.9
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling aho-corasick v1.1.4
[INFO] [stderr]    Compiling buffer-redux v1.1.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling form_urlencoded v1.2.2
[INFO] [stderr]    Compiling quote v1.0.44
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling syn v2.0.115
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling cc v1.2.55
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling cmake v0.1.57
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling liblzma-sys v0.3.13
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]    Compiling libz-sys v1.1.23
[INFO] [stderr]    Compiling libz-ng-sys v1.1.23
[INFO] [stderr]    Compiling bzip2 v0.4.4
[INFO] [stderr]    Compiling liblzma v0.3.6
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling zerovec-derive v0.11.2
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.8.1
[INFO] [stderr]    Compiling zerofrom v0.1.6
[INFO] [stderr]    Compiling yoke v0.8.1
[INFO] [stderr]    Compiling zerotrie v0.2.3
[INFO] [stderr]    Compiling zerovec v0.11.5
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling tinystr v0.8.2
[INFO] [stderr]    Compiling potential_utf v0.1.4
[INFO] [stderr]    Compiling icu_locale_core v2.1.1
[INFO] [stderr]    Compiling icu_collections v2.1.1
[INFO] [stderr]    Compiling icu_provider v2.1.1
[INFO] [stderr]    Compiling icu_normalizer v2.1.1
[INFO] [stderr]    Compiling icu_properties v2.1.2
[INFO] [stderr]    Compiling zstd v0.13.3
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]    Compiling idna_adapter v1.2.1
[INFO] [stderr]    Compiling idna v1.1.0
[INFO] [stderr]    Compiling url v2.5.8
[INFO] [stderr]    Compiling flate2 v1.1.9
[INFO] [stderr]    Compiling needletail v0.6.3
[INFO] [stderr]    Compiling rust-htslib v1.0.0
[INFO] [stderr]    Compiling umi-core v1.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 05s
[INFO] running `Command { std: "docker" "inspect" "904a22fcb8c508d6af8009ea163820032ecd4b31860f1aadb0e73cbc7dd24a88", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "904a22fcb8c508d6af8009ea163820032ecd4b31860f1aadb0e73cbc7dd24a88", kill_on_drop: false }`
[INFO] [stdout] 904a22fcb8c508d6af8009ea163820032ecd4b31860f1aadb0e73cbc7dd24a88
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5efbf3eac20bf2ca995b5d9fd8fd27e7fa16eb8165acf53bee2b8630030a0db6
[INFO] running `Command { std: "docker" "start" "-a" "5efbf3eac20bf2ca995b5d9fd8fd27e7fa16eb8165acf53bee2b8630030a0db6", kill_on_drop: false }`
[INFO] [stderr]    Compiling umi-core v1.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1.56s
[INFO] running `Command { std: "docker" "inspect" "5efbf3eac20bf2ca995b5d9fd8fd27e7fa16eb8165acf53bee2b8630030a0db6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5efbf3eac20bf2ca995b5d9fd8fd27e7fa16eb8165acf53bee2b8630030a0db6", kill_on_drop: false }`
[INFO] [stdout] 5efbf3eac20bf2ca995b5d9fd8fd27e7fa16eb8165acf53bee2b8630030a0db6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 2ce0a32081cea9ccf99057c491f76924db9ec90d33f5cf12c1929fa1a55ec818
[INFO] running `Command { std: "docker" "start" "-a" "2ce0a32081cea9ccf99057c491f76924db9ec90d33f5cf12c1929fa1a55ec818", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.10s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/umi_core-e89c998a58c4fbdf)
[INFO] [stdout] 
[INFO] [stdout] running 20 tests
[INFO] [stdout] test pattern::tests::extract_read_too_short ... ok
[INFO] [stdout] test pattern::tests::extract_3prime ... ok
[INFO] [stdout] test dedup::tests::python_random_matches ... ok
[INFO] [stdout] test pattern::tests::parse_pattern_with_cell ... ok
[INFO] [stdout] test pattern::tests::parse_valid_pattern ... ok
[INFO] [stdout] test pattern::tests::parse_invalid_pattern ... ok
[INFO] [stdout] test pattern::tests::extract_5prime_nnnxxxxnn ... ok
[INFO] [stdout] test pattern::tests::regex_no_match ... ok
[INFO] [stdout] test pattern::tests::regex_parse_invalid_regex ... ok
[INFO] [stdout] test pattern::tests::regex_parse_no_barcode_groups ... ok
[INFO] [stdout] test pattern::tests::regex_parse_valid ... ok
[INFO] [stdout] test whitelist::tests::test_cumulative_sum ... ok
[INFO] [stdout] test whitelist::tests::test_gaussian_kde_single_point ... ok
[INFO] [stdout] test whitelist::tests::test_get_max_distance_index ... ok
[INFO] [stdout] test whitelist::tests::test_hamming_distance_different_length ... ok
[INFO] [stdout] test whitelist::tests::test_hamming_distance_one ... ok
[INFO] [stdout] test whitelist::tests::test_hamming_distance_same ... ok
[INFO] [stdout] test whitelist::tests::test_sample_std ... ok
[INFO] [stdout] test pattern::tests::regex_extract_equivalent_to_string ... ok
[INFO] [stdout] test pattern::tests::regex_extract_with_cell ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 20 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests umi_core
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "2ce0a32081cea9ccf99057c491f76924db9ec90d33f5cf12c1929fa1a55ec818", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2ce0a32081cea9ccf99057c491f76924db9ec90d33f5cf12c1929fa1a55ec818", kill_on_drop: false }`
[INFO] [stdout] 2ce0a32081cea9ccf99057c491f76924db9ec90d33f5cf12c1929fa1a55ec818