[INFO] fetching crate seqkmer 0.1.5... [INFO] testing seqkmer-0.1.5 against master#562dee4820c458d823175268e41601d4c060588a for pr-154210-2 [INFO] extracting crate seqkmer 0.1.5 into /workspace/builds/worker-0-tc1/source [INFO] started tweaking crates.io crate seqkmer 0.1.5 [INFO] finished tweaking crates.io crate seqkmer 0.1.5 [INFO] tweaked toml for crates.io crate seqkmer 0.1.5 written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate seqkmer 0.1.5 on toolchain 562dee4820c458d823175268e41601d4c060588a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate seqkmer 0.1.5 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded scoped_threadpool v0.1.9 [INFO] [stderr] Downloaded crossbeam-channel v0.5.13 [INFO] [stderr] Downloaded flate2 v1.0.33 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] b5bceee9ce9a725b458562b2a71cace8181ee4e3210448ee3180ba16bc26e2d8 [INFO] running `Command { std: "docker" "start" "-a" "b5bceee9ce9a725b458562b2a71cace8181ee4e3210448ee3180ba16bc26e2d8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b5bceee9ce9a725b458562b2a71cace8181ee4e3210448ee3180ba16bc26e2d8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b5bceee9ce9a725b458562b2a71cace8181ee4e3210448ee3180ba16bc26e2d8", kill_on_drop: false }` [INFO] [stdout] b5bceee9ce9a725b458562b2a71cace8181ee4e3210448ee3180ba16bc26e2d8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 41eb0031a4f4a49f714eb2c9fedbaf362c7f85435ffb0e4e030d3ed7fad53da6 [INFO] running `Command { std: "docker" "start" "-a" "41eb0031a4f4a49f714eb2c9fedbaf362c7f85435ffb0e4e030d3ed7fad53da6", kill_on_drop: false }` [INFO] [stderr] Compiling crossbeam-utils v0.8.20 [INFO] [stderr] Compiling adler2 v2.0.0 [INFO] [stderr] Compiling crc32fast v1.4.2 [INFO] [stderr] Compiling scoped_threadpool v0.1.9 [INFO] [stderr] Compiling miniz_oxide v0.8.0 [INFO] [stderr] Compiling flate2 v1.0.33 [INFO] [stderr] Compiling crossbeam-channel v0.5.13 [INFO] [stderr] Compiling seqkmer v0.1.5 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 3.20s [INFO] running `Command { std: "docker" "inspect" "41eb0031a4f4a49f714eb2c9fedbaf362c7f85435ffb0e4e030d3ed7fad53da6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "41eb0031a4f4a49f714eb2c9fedbaf362c7f85435ffb0e4e030d3ed7fad53da6", kill_on_drop: false }` [INFO] [stdout] 41eb0031a4f4a49f714eb2c9fedbaf362c7f85435ffb0e4e030d3ed7fad53da6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f16c73ba2911d7e0072a6140fa4e5aff7c4d949876e32c851fee4c88e4f631a9 [INFO] running `Command { std: "docker" "start" "-a" "f16c73ba2911d7e0072a6140fa4e5aff7c4d949876e32c851fee4c88e4f631a9", kill_on_drop: false }` [INFO] [stderr] Compiling seqkmer v0.1.5 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1.04s [INFO] running `Command { std: "docker" "inspect" "f16c73ba2911d7e0072a6140fa4e5aff7c4d949876e32c851fee4c88e4f631a9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f16c73ba2911d7e0072a6140fa4e5aff7c4d949876e32c851fee4c88e4f631a9", kill_on_drop: false }` [INFO] [stdout] f16c73ba2911d7e0072a6140fa4e5aff7c4d949876e32c851fee4c88e4f631a9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 667db4afe8610f23ff2eaffd661022868dad63a949657d62403d4b3a2404f97e [INFO] running `Command { std: "docker" "start" "-a" "667db4afe8610f23ff2eaffd661022868dad63a949657d62403d4b3a2404f97e", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.04s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/seqkmer-1575b6e2df415fa0) [INFO] [stdout] [INFO] [stdout] running 12 tests [INFO] [stdout] test fasta::tests::buffer_fasta_reader_matches_standard_reader ... ok [INFO] [stdout] test fasta::tests::buffer_fasta_reader_trims_whitespace_and_comments ... ok [INFO] [stdout] test fastq::tests::detects_interleaved_with_slash_suffixes ... ok [INFO] [stdout] test fastq::tests::paired_files_mode_requires_balanced_lengths ... ok [INFO] [stdout] test fastq::tests::quality_threshold_masks_low_quality_bases ... ok [INFO] [stdout] test fastq::tests::detects_interleaved_with_space_delimited_read_numbers ... ok [INFO] [stderr] Doc-tests seqkmer [INFO] [stdout] test mmscanner::tests::test_to_candidate_lmer ... ok [INFO] [stdout] test fastq::tests::interleaved_reader_errors_when_r2_missing ... ok [INFO] [stdout] test fastx::tests::test_read_ont_fastq ... ok [INFO] [stdout] test fastq::tests::single_end_fastq_remains_single ... ok [INFO] [stdout] test fasta::tests::fasta_reader_handles_multiline_sequences ... ok [INFO] [stdout] test fasta::tests::fasta_reader_handles_empty_sequences ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 12 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 49 tests [INFO] [stdout] test src/fasta.rs - fasta::FastaReader>::from_path (line 229) ... ok [INFO] [stdout] test src/fasta.rs - fasta::FastaReader (line 88) ... ok [INFO] [stdout] test src/fasta.rs - fasta::BufferFastaReader (line 272) ... ok [INFO] [stdout] test src/fasta.rs - fasta::BufferFastaReader>::from_path (line 423) ... ok [INFO] [stdout] test src/fasta.rs - fasta::BufferFastaReader::new (line 314) ... ok [INFO] [stdout] test src/fasta.rs - fasta::BufferFastaReader::with_capacity (line 332) ... ok [INFO] [stdout] test src/fasta.rs - fasta::FastaReader::with_capacity (line 147) ... ok [INFO] [stdout] test src/fasta.rs - fasta::FastaReader::new (line 129) ... ok [INFO] [stdout] test src/fastx.rs - fastx::FastxReader>::from_buffer_reader (line 101) ... ok [INFO] [stdout] test src/fastq.rs - fastq::FastqReader>::from_path (line 528) ... ok [INFO] [stdout] test src/fastq.rs - fastq::FastqReader (line 84) ... ok [INFO] [stdout] test src/fastq.rs - fastq::FastqReader::new (line 122) ... ok [INFO] [stdout] test src/fastq.rs - fastq::FastqReader::with_capacity (line 140) ... ok [INFO] [stdout] test src/fastx.rs - fastx::FastxReader (line 13) ... ok [INFO] [stdout] test src/mmscanner.rs - mmscanner::Cursor (line 147) ... ok [INFO] [stdout] test src/fastx.rs - fastx::FastxReader::new (line 39) ... ok [INFO] [stdout] test src/feat.rs - feat::fmix64 (line 129) ... ok [INFO] [stdout] test src/mmscanner.rs - mmscanner::MinimizerData (line 38) ... ok [INFO] [stdout] test src/mmscanner.rs - mmscanner::MinimizerWindow (line 64) ... ok [INFO] [stdout] test src/fastx.rs - fastx::FastxReader>::from_paths (line 66) ... ok [INFO] [stdout] test src/parallel.rs - parallel::ParallelItem (line 18) ... ok [INFO] [stdout] test src/mmscanner.rs - mmscanner::MinimizerIterator (line 196) ... ok [INFO] [stdout] test src/fastq.rs - fastq::FastqReader::read_next (line 262) ... ok [INFO] [stdout] test src/parallel.rs - parallel::create_reader (line 56) ... ok [INFO] [stdout] test src/reader.rs - reader::PosData (line 182) ... ok [INFO] [stdout] test src/mmscanner.rs - mmscanner::scan_sequence (line 328) ... ok [INFO] [stdout] test src/reader.rs - reader::dyn_reader (line 13) ... ok [INFO] [stdout] test src/reader.rs - reader::open_file (line 81) ... ok [INFO] [stdout] test src/reader.rs - reader::detect_file_format (line 105) ... ok [INFO] [stdout] test src/reader.rs - reader::SpaceDist (line 213) ... ok [INFO] [stdout] test src/reader.rs - reader::trim_end (line 152) ... ok [INFO] [stdout] test src/reader.rs - reader::is_gzipped (line 37) ... ok [INFO] [stdout] test src/seq.rs - seq::Base (line 53) ... ok [INFO] [stdout] test src/seq.rs - seq::Base::map (line 106) ... ok [INFO] [stdout] test src/parallel.rs - parallel::buffer_map_parallel (line 277) ... ok [INFO] [stdout] test src/reader.rs - reader::trim_pair_info (line 59) ... ok [INFO] [stdout] test src/seq.rs - seq::Base::new (line 81) ... ok [INFO] [stdout] test src/seq.rs - seq::SeqFormat (line 7) ... ok [INFO] [stdout] test src/parallel.rs - parallel::buffer_read_parallel (line 176) ... ok [INFO] [stdout] test src/utils.rs - utils::OptionPair::apply (line 117) ... ok [INFO] [stdout] test src/utils.rs - utils::OptionPair::apply_mut (line 142) ... ok [INFO] [stdout] test src/utils.rs - utils::OptionPair::from (line 192) ... ok [INFO] [stdout] test src/seq.rs - seq::SeqHeader (line 26) ... ok [INFO] [stdout] test src/utils.rs - utils::OptionPair::single (line 12) ... ok [INFO] [stdout] test src/utils.rs - utils::OptionPair::from_slice (line 169) ... ok [INFO] [stdout] test src/utils.rs - utils::OptionPair::map (line 32) ... ok [INFO] [stdout] test src/utils.rs - utils::OptionPair::reduce_str (line 89) ... ok [INFO] [stdout] test src/utils.rs - utils::OptionPair::reduce (line 61) ... ok [INFO] [stdout] test src/parallel.rs - parallel::read_parallel (line 84) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 49 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 5.56s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "667db4afe8610f23ff2eaffd661022868dad63a949657d62403d4b3a2404f97e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "667db4afe8610f23ff2eaffd661022868dad63a949657d62403d4b3a2404f97e", kill_on_drop: false }` [INFO] [stdout] 667db4afe8610f23ff2eaffd661022868dad63a949657d62403d4b3a2404f97e