[INFO] fetching crate seq_geom_parser 1.1.0... [INFO] testing seq_geom_parser-1.1.0 against master#562dee4820c458d823175268e41601d4c060588a for pr-154210-2 [INFO] extracting crate seq_geom_parser 1.1.0 into /workspace/builds/worker-5-tc1/source [INFO] started tweaking crates.io crate seq_geom_parser 1.1.0 [INFO] finished tweaking crates.io crate seq_geom_parser 1.1.0 [INFO] tweaked toml for crates.io crate seq_geom_parser 1.1.0 written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate seq_geom_parser 1.1.0 on toolchain 562dee4820c458d823175268e41601d4c060588a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate seq_geom_parser 1.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded chumsky v0.12.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 73c00267ae6079406298e3750096e2fb64c55c7099caba77a616d4b9900dac03 [INFO] running `Command { std: "docker" "start" "-a" "73c00267ae6079406298e3750096e2fb64c55c7099caba77a616d4b9900dac03", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "73c00267ae6079406298e3750096e2fb64c55c7099caba77a616d4b9900dac03", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "73c00267ae6079406298e3750096e2fb64c55c7099caba77a616d4b9900dac03", kill_on_drop: false }` [INFO] [stdout] 73c00267ae6079406298e3750096e2fb64c55c7099caba77a616d4b9900dac03 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4d76f5adaff46161cae32532ed1a9a2b8f8167fc2ea9bd71b55ab8d28aebea23 [INFO] running `Command { std: "docker" "start" "-a" "4d76f5adaff46161cae32532ed1a9a2b8f8167fc2ea9bd71b55ab8d28aebea23", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.8.0 [INFO] [stderr] Compiling ariadne v0.5.1 [INFO] [stderr] Compiling stacker v0.1.23 [INFO] [stderr] Compiling syn v2.0.117 [INFO] [stderr] Compiling object v0.37.3 [INFO] [stderr] Compiling thiserror-impl v2.0.18 [INFO] [stderr] Compiling thiserror v2.0.18 [INFO] [stderr] Compiling ar_archive_writer v0.5.1 [INFO] [stderr] Compiling psm v0.1.30 [INFO] [stderr] Compiling chumsky v0.12.0 [INFO] [stderr] Compiling seq_geom_parser v1.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 14.94s [INFO] running `Command { std: "docker" "inspect" "4d76f5adaff46161cae32532ed1a9a2b8f8167fc2ea9bd71b55ab8d28aebea23", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4d76f5adaff46161cae32532ed1a9a2b8f8167fc2ea9bd71b55ab8d28aebea23", kill_on_drop: false }` [INFO] [stdout] 4d76f5adaff46161cae32532ed1a9a2b8f8167fc2ea9bd71b55ab8d28aebea23 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] b813b896f349039f15d55fcdf79a969e47ef2b4833d2cea4a2ab871b4b2ccc51 [INFO] running `Command { std: "docker" "start" "-a" "b813b896f349039f15d55fcdf79a969e47ef2b4833d2cea4a2ab871b4b2ccc51", kill_on_drop: false }` [INFO] [stderr] Compiling zerocopy v0.8.42 [INFO] [stderr] Compiling object v0.37.3 [INFO] [stderr] Compiling regex-automata v0.4.14 [INFO] [stderr] Compiling clap_builder v4.6.0 [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] Compiling syn v2.0.117 [INFO] [stderr] Compiling serde_json v1.0.149 [INFO] [stderr] Compiling plotters v0.3.7 [INFO] [stderr] Compiling is-terminal v0.4.17 [INFO] [stderr] Compiling criterion-plot v0.5.0 [INFO] [stderr] Compiling regex v1.12.3 [INFO] [stderr] Compiling clap v4.6.0 [INFO] [stderr] Compiling ar_archive_writer v0.5.1 [INFO] [stderr] Compiling zerocopy-derive v0.8.42 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling thiserror-impl v2.0.18 [INFO] [stderr] Compiling psm v0.1.30 [INFO] [stderr] Compiling stacker v0.1.23 [INFO] [stderr] Compiling chumsky v0.12.0 [INFO] [stderr] Compiling thiserror v2.0.18 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling tinytemplate v1.2.1 [INFO] [stderr] Compiling seq_geom_parser v1.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Compiling half v2.7.1 [INFO] [stderr] Compiling ciborium-ll v0.2.2 [INFO] [stderr] Compiling ciborium v0.2.2 [INFO] [stderr] Compiling criterion v0.5.1 [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 33.29s [INFO] running `Command { std: "docker" "inspect" "b813b896f349039f15d55fcdf79a969e47ef2b4833d2cea4a2ab871b4b2ccc51", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b813b896f349039f15d55fcdf79a969e47ef2b4833d2cea4a2ab871b4b2ccc51", kill_on_drop: false }` [INFO] [stdout] b813b896f349039f15d55fcdf79a969e47ef2b4833d2cea4a2ab871b4b2ccc51 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 43dd1519927d6ada0cac04db0bb0bec1137a59f718b3a5f61f314f624349f8c6 [INFO] running `Command { std: "docker" "start" "-a" "43dd1519927d6ada0cac04db0bb0bec1137a59f718b3a5f61f314f624349f8c6", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.13s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/seq_geom_parser-bb6da5c59da8d09d) [INFO] [stdout] [INFO] [stdout] running 39 tests [INFO] [stdout] test extract::tests::extract_chromium_v3 ... ok [INFO] [stdout] test extract::tests::extract_flex_v2_anchor_not_found ... ok [INFO] [stdout] test extract::tests::extract_hamming_tolerance ... ok [INFO] [stdout] test extract::tests::extract_flex_v2_no_gap ... ok [INFO] [stdout] test extract::tests::extract_flex_v2_exact_anchor ... ok [INFO] [stdout] test extract::tests::extract_boundary_resolved_prefix_read_and_suffix_barcode ... ok [INFO] [stdout] test extract::tests::extract_variable_barcode_with_anchor ... ok [INFO] [stdout] test normalize::tests::needs_padding_check ... ok [INFO] [stdout] test normalize::tests::no_collisions_across_lengths ... ok [INFO] [stdout] test normalize::tests::normalized_len_check ... ok [INFO] [stdout] test normalize::tests::pad_deficit_1 ... ok [INFO] [stdout] test normalize::tests::pad_deficit_2 ... ok [INFO] [stdout] test extract::tests::extract_flex_v1 ... ok [INFO] [stdout] test parse::tests::parse_fixed_sequence ... ok [INFO] [stdout] test normalize::tests::pad_deficit_4 ... ok [INFO] [stdout] test extract::tests::general_extractor_does_not_return_truncated_fields ... ok [INFO] [stdout] test normalize::tests::pad_no_deficit ... ok [INFO] [stdout] test parse::tests::parse_chromium_v3 ... ok [INFO] [stdout] test parse::tests::error_message_quality ... ok [INFO] [stdout] test normalize::tests::pad_deficit_3 ... ok [INFO] [stdout] test parse::tests::validate_boundary_segment_with_two_flexible_fields_rejected ... ok [INFO] [stdout] test parse::tests::parse_hamming_distance ... ok [INFO] [stdout] test parse::tests::parse_hamming_with_space ... ok [INFO] [stdout] test parse::tests::parse_boundary_resolved_unbounded ... ok [INFO] [stdout] test parse::tests::validate_missing_barcode ... ok [INFO] [stdout] test parse::tests::validate_missing_umi ... ok [INFO] [stdout] test parse::tests::validate_variable_length_barcode_without_anchor_rejected ... ok [INFO] [stdout] test parse::tests::validate_variable_length_barcode_with_anchor ... ok [INFO] [stdout] test parse::tests::parse_numbered_barcodes ... ok [INFO] [stdout] test parse::tests::parse_flex_v1 ... ok [INFO] [stdout] test parse::tests::parse_flex_v2_with_anchor ... ok [INFO] [stdout] test parse::tests::classify_fixed_vs_variable_complexity ... ok [INFO] [stdout] test normalize::tests::padbuf_reuse ... ok [INFO] [stdout] test parse::tests::validate_range_without_anchor ... ok [INFO] [stdout] test extract::tests::boundary_resolved_prefers_leftmost_best_anchor ... ok [INFO] [stdout] test extract::tests::hamming_distance_short_circuits_past_limit ... ok [INFO] [stdout] test extract::tests::hamming_distance_test ... ok [INFO] [stdout] test extract::tests::variable_umi_sets_normalization_metadata ... ok [INFO] [stdout] test parse::tests::validate_range_too_wide ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 39 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] Doc-tests seq_geom_parser [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test src/extract.rs - extract::CompiledGeom::extract (line 539) ... ignored [INFO] [stdout] test src/normalize.rs - normalize (line 13) ... ok [INFO] [stdout] test src/lib.rs - (line 74) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 2 passed; 0 failed; 1 ignored; 0 measured; 0 filtered out; finished in 0.27s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "43dd1519927d6ada0cac04db0bb0bec1137a59f718b3a5f61f314f624349f8c6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "43dd1519927d6ada0cac04db0bb0bec1137a59f718b3a5f61f314f624349f8c6", kill_on_drop: false }` [INFO] [stdout] 43dd1519927d6ada0cac04db0bb0bec1137a59f718b3a5f61f314f624349f8c6