[INFO] fetching crate rust-spoa 0.2.4... [INFO] testing rust-spoa-0.2.4 against master#562dee4820c458d823175268e41601d4c060588a for pr-154210-2 [INFO] extracting crate rust-spoa 0.2.4 into /workspace/builds/worker-3-tc1/source [INFO] started tweaking crates.io crate rust-spoa 0.2.4 [INFO] finished tweaking crates.io crate rust-spoa 0.2.4 [INFO] tweaked toml for crates.io crate rust-spoa 0.2.4 written to /workspace/builds/worker-3-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate rust-spoa 0.2.4 on toolchain 562dee4820c458d823175268e41601d4c060588a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 4 packages to latest compatible versions [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded cmake v0.1.58 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a08757f30fb9a7a7b19ea4927702e8e96b1d074f8698407c48d102a4b2884c3d [INFO] running `Command { std: "docker" "start" "-a" "a08757f30fb9a7a7b19ea4927702e8e96b1d074f8698407c48d102a4b2884c3d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a08757f30fb9a7a7b19ea4927702e8e96b1d074f8698407c48d102a4b2884c3d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a08757f30fb9a7a7b19ea4927702e8e96b1d074f8698407c48d102a4b2884c3d", kill_on_drop: false }` [INFO] [stdout] a08757f30fb9a7a7b19ea4927702e8e96b1d074f8698407c48d102a4b2884c3d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d016f99efb12552a81e0c6837395a1aa70c6ee292da937aab75975e2a6feb3eb [INFO] running `Command { std: "docker" "start" "-a" "d016f99efb12552a81e0c6837395a1aa70c6ee292da937aab75975e2a6feb3eb", kill_on_drop: false }` [INFO] [stderr] Compiling find-msvc-tools v0.1.9 [INFO] [stderr] Compiling cc v1.2.60 [INFO] [stderr] Compiling cmake v0.1.58 [INFO] [stderr] Compiling rust-spoa v0.2.4 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated method `cc::Build::shared_flag`: cc only creates static libraries, setting this does nothing [INFO] [stdout] --> build.rs:23:10 [INFO] [stdout] | [INFO] [stdout] 23 | .shared_flag(false) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `cc::Build::static_flag`: cc only creates static libraries, setting this does nothing [INFO] [stdout] --> build.rs:24:10 [INFO] [stdout] | [INFO] [stdout] 24 | .static_flag(true) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: failed to run custom build command for `rust-spoa v0.2.4 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/rust-spoa-ffa4e79abf00029b/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] CMAKE_TOOLCHAIN_FILE_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_TOOLCHAIN_FILE_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_TOOLCHAIN_FILE = None [INFO] [stderr] CMAKE_TOOLCHAIN_FILE = None [INFO] [stderr] CMAKE_GENERATOR_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_GENERATOR_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_GENERATOR = None [INFO] [stderr] CMAKE_GENERATOR = None [INFO] [stderr] CMAKE_PREFIX_PATH_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_PREFIX_PATH_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_PREFIX_PATH = None [INFO] [stderr] CMAKE_PREFIX_PATH = None [INFO] [stderr] CMAKE_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE = None [INFO] [stderr] CMAKE = None [INFO] [stderr] -- The CXX compiler identification is GNU 13.3.0 [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ - skipped [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring done (0.8s) [INFO] [stderr] -- Generating done (0.0s) [INFO] [stderr] -- Build files have been written to: /opt/rustwide/target/debug/build/rust-spoa-c0a2eee14f6fe632/out/build [INFO] [stderr] [ 20%] Building CXX object CMakeFiles/spoa.dir/src/simd_alignment_engine.cpp.o [INFO] [stderr] [ 80%] Building CXX object CMakeFiles/spoa.dir/src/graph.cpp.o [INFO] [stderr] [ 40%] Building CXX object CMakeFiles/spoa.dir/src/alignment_engine.cpp.o [INFO] [stderr] [ 80%] Building CXX object CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] running: cd "/opt/rustwide/target/debug/build/rust-spoa-c0a2eee14f6fe632/out/build" && CMAKE_PREFIX_PATH="" LC_ALL="C" "cmake" "/opt/rustwide/workdir/src/spoa" "-B" "/opt/rustwide/target/debug/build/rust-spoa-c0a2eee14f6fe632/out/build" "-DCMAKE_BUILD_TYPE=Release" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/rust-spoa-c0a2eee14f6fe632/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64 -w" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64 -w" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64 -w" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): [INFO] [stderr] Compatibility with CMake < 3.5 will be removed from a future version of [INFO] [stderr] CMake. [INFO] [stderr] [INFO] [stderr] Update the VERSION argument value or use a ... suffix to tell [INFO] [stderr] CMake that the project does not need compatibility with older versions. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning: [INFO] [stderr] Manually-specified variables were not used by the project: [INFO] [stderr] [INFO] [stderr] CMAKE_ASM_COMPILER [INFO] [stderr] CMAKE_ASM_FLAGS [INFO] [stderr] CMAKE_C_COMPILER [INFO] [stderr] CMAKE_C_FLAGS [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] running: cd "/opt/rustwide/target/debug/build/rust-spoa-c0a2eee14f6fe632/out/build" && LC_ALL="C" MAKEFLAGS="-j --jobserver-fds=8,9 --jobserver-auth=8,9" "cmake" "--build" "/opt/rustwide/target/debug/build/rust-spoa-c0a2eee14f6fe632/out/build" "--target" "install" "--config" "Debug" [INFO] [stderr] /opt/rustwide/workdir/src/spoa/src/alignment_engine.cpp: In function 'std::unique_ptr spoa::createAlignmentEngine(AlignmentType, int8_t, int8_t, int8_t, int8_t)': [INFO] [stderr] /opt/rustwide/workdir/src/spoa/src/alignment_engine.cpp:30:20: error: 'invalid_argument' is not a member of 'std' [INFO] [stderr] 30 | throw std::invalid_argument("[spoa::createAlignmentEngine] error: " [INFO] [stderr] | ^~~~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/workdir/src/spoa/src/alignment_engine.cpp:13:1: note: 'std::invalid_argument' is defined in header ''; did you forget to '#include '? [INFO] [stderr] 12 | #include "simd_alignment_engine.hpp" [INFO] [stderr] +++ |+#include [INFO] [stderr] 13 | #include "spoa/alignment_engine.hpp" [INFO] [stderr] /opt/rustwide/workdir/src/spoa/src/alignment_engine.cpp:34:20: error: 'invalid_argument' is not a member of 'std' [INFO] [stderr] 34 | throw std::invalid_argument("[spoa::createAlignmentEngine] error: " [INFO] [stderr] | ^~~~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/workdir/src/spoa/src/alignment_engine.cpp:34:20: note: 'std::invalid_argument' is defined in header ''; did you forget to '#include '? [INFO] [stderr] /opt/rustwide/workdir/src/spoa/src/alignment_engine.cpp:38:20: error: 'invalid_argument' is not a member of 'std' [INFO] [stderr] 38 | throw std::invalid_argument("[spoa::createAlignmentEngine] error: " [INFO] [stderr] | ^~~~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/workdir/src/spoa/src/alignment_engine.cpp:38:20: note: 'std::invalid_argument' is defined in header ''; did you forget to '#include '? [INFO] [stderr] gmake[2]: *** [CMakeFiles/spoa.dir/build.make:76: CMakeFiles/spoa.dir/src/alignment_engine.cpp.o] Error 1 [INFO] [stderr] gmake[2]: *** Waiting for unfinished jobs.... [INFO] [stderr] gmake[1]: *** [CMakeFiles/Makefile2:83: CMakeFiles/spoa.dir/all] Error 2 [INFO] [stderr] gmake: *** [Makefile:136: all] Error 2 [INFO] [stderr] [INFO] [stderr] thread 'main' (80) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/cmake-0.1.58/src/lib.rs:1132:5: [INFO] [stderr] [INFO] [stderr] command did not execute successfully, got: exit status: 2 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x57123fcfe72a - std[31e582c13f4e914f]::backtrace_rs::backtrace::libunwind::trace [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x57123fcfe72a - std[31e582c13f4e914f]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x57123fcfe72a - std[31e582c13f4e914f]::sys::backtrace::_print_fmt [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/backtrace.rs:74:9 [INFO] [stderr] 3: 0x57123fcfe72a - <::print::DisplayBacktrace as core[fa0eadad68403074]::fmt::Display>::fmt [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/backtrace.rs:44:26 [INFO] [stderr] 4: 0x57123fd1335a - ::fmt [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/fmt/rt.rs:152:76 [INFO] [stderr] 5: 0x57123fd1335a - core[fa0eadad68403074]::fmt::write [INFO] [stderr] 6: 0x57123fd045c2 - std[31e582c13f4e914f]::io::default_write_fmt:: [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x57123fd045c2 - ::write_fmt [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/io/mod.rs:1994:13 [INFO] [stderr] 8: 0x57123fcdec3f - ::print [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/backtrace.rs:47:9 [INFO] [stderr] 9: 0x57123fcdec3f - std[31e582c13f4e914f]::panicking::default_hook::{closure#0} [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:292:27 [INFO] [stderr] 10: 0x57123fcf8701 - std[31e582c13f4e914f]::panicking::default_hook [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:319:9 [INFO] [stderr] 11: 0x57123fcf88bb - std[31e582c13f4e914f]::panicking::panic_with_hook [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:825:13 [INFO] [stderr] 12: 0x57123fcdecf8 - std[31e582c13f4e914f]::panicking::panic_handler::{closure#0} [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:698:13 [INFO] [stderr] 13: 0x57123fcd3e19 - std[31e582c13f4e914f]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/backtrace.rs:182:18 [INFO] [stderr] 14: 0x57123fcdf72d - __rustc[fc8e3a9f23f26cb]::rust_begin_unwind [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:689:5 [INFO] [stderr] 15: 0x57123fd13aec - core[fa0eadad68403074]::panicking::panic_fmt [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/panicking.rs:80:14 [INFO] [stderr] 16: 0x57123fc50967 - cmake[6df1327c91be5c97]::fail [INFO] [stderr] 17: 0x57123fc505f3 - cmake[6df1327c91be5c97]::run [INFO] [stderr] 18: 0x57123fc56674 - ::build [INFO] [stderr] 19: 0x57123fc415fd - build_script_build[4076d7e8f537a407]::main [INFO] [stderr] 20: 0x57123fc42423 - >::call_once [INFO] [stderr] 21: 0x57123fc41526 - std[31e582c13f4e914f]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stderr] 22: 0x57123fc41539 - std[31e582c13f4e914f]::rt::lang_start::<()>::{closure#0} [INFO] [stderr] 23: 0x57123fcf7704 - <&dyn core[fa0eadad68403074]::ops::function::Fn<(), Output = i32> + core[fa0eadad68403074]::marker::Sync + core[fa0eadad68403074]::panic::unwind_safe::RefUnwindSafe as core[fa0eadad68403074]::ops::function::FnOnce<()>>::call_once [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/ops/function.rs:287:21 [INFO] [stderr] 24: 0x57123fcf7704 - std[31e582c13f4e914f]::panicking::catch_unwind::do_call::<&dyn core[fa0eadad68403074]::ops::function::Fn<(), Output = i32> + core[fa0eadad68403074]::marker::Sync + core[fa0eadad68403074]::panic::unwind_safe::RefUnwindSafe, i32> [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:581:40 [INFO] [stderr] 25: 0x57123fcf7704 - std[31e582c13f4e914f]::panicking::catch_unwind:: + core[fa0eadad68403074]::marker::Sync + core[fa0eadad68403074]::panic::unwind_safe::RefUnwindSafe> [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:544:19 [INFO] [stderr] 26: 0x57123fcf7704 - std[31e582c13f4e914f]::panic::catch_unwind::<&dyn core[fa0eadad68403074]::ops::function::Fn<(), Output = i32> + core[fa0eadad68403074]::marker::Sync + core[fa0eadad68403074]::panic::unwind_safe::RefUnwindSafe, i32> [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panic.rs:359:14 [INFO] [stderr] 27: 0x57123fcf7704 - std[31e582c13f4e914f]::rt::lang_start_internal::{closure#0} [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/rt.rs:175:24 [INFO] [stderr] 28: 0x57123fcf7704 - std[31e582c13f4e914f]::panicking::catch_unwind::do_call:: [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:581:40 [INFO] [stderr] 29: 0x57123fcf7704 - std[31e582c13f4e914f]::panicking::catch_unwind:: [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:544:19 [INFO] [stderr] 30: 0x57123fcf7704 - std[31e582c13f4e914f]::panic::catch_unwind:: [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panic.rs:359:14 [INFO] [stderr] 31: 0x57123fcf7704 - std[31e582c13f4e914f]::rt::lang_start_internal [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/rt.rs:171:5 [INFO] [stderr] 32: 0x57123fc41091 - std[31e582c13f4e914f]::rt::lang_start::<()> [INFO] [stderr] 33: 0x57123fc424d5 - main [INFO] [stderr] 34: 0x76bd26e0c1ca - [INFO] [stderr] 35: 0x76bd26e0c28b - __libc_start_main [INFO] [stderr] 36: 0x57123fc40285 - _start [INFO] [stderr] 37: 0x0 - [INFO] running `Command { std: "docker" "inspect" "d016f99efb12552a81e0c6837395a1aa70c6ee292da937aab75975e2a6feb3eb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d016f99efb12552a81e0c6837395a1aa70c6ee292da937aab75975e2a6feb3eb", kill_on_drop: false }` [INFO] [stdout] d016f99efb12552a81e0c6837395a1aa70c6ee292da937aab75975e2a6feb3eb