[INFO] fetching crate rdk-sys 0.1.1... [INFO] testing rdk-sys-0.1.1 against master#562dee4820c458d823175268e41601d4c060588a for pr-154210-2 [INFO] extracting crate rdk-sys 0.1.1 into /workspace/builds/worker-3-tc1/source [INFO] started tweaking crates.io crate rdk-sys 0.1.1 [INFO] finished tweaking crates.io crate rdk-sys 0.1.1 [INFO] tweaked toml for crates.io crate rdk-sys 0.1.1 written to /workspace/builds/worker-3-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate rdk-sys 0.1.1 on toolchain 562dee4820c458d823175268e41601d4c060588a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 61 packages to latest compatible versions [INFO] [stderr] Adding env_logger v0.10.2 (available: v0.11.10) [INFO] [stderr] Adding which v4.4.2 (available: v8.0.2) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded link-cplusplus v1.0.12 [INFO] [stderr] Downloaded cxxbridge-flags v1.0.194 [INFO] [stderr] Downloaded which v4.4.2 [INFO] [stderr] Downloaded codespan-reporting v0.13.1 [INFO] [stderr] Downloaded scratch v1.0.9 [INFO] [stderr] Downloaded cxxbridge-macro v1.0.194 [INFO] [stderr] Downloaded env_logger v0.10.2 [INFO] [stderr] Downloaded clap v4.6.1 [INFO] [stderr] Downloaded cxx-build v1.0.194 [INFO] [stderr] Downloaded cxxbridge-cmd v1.0.194 [INFO] [stderr] Downloaded cxx v1.0.194 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a68fbd657f705ba372cc99fc2a41e8be32ac9ea202130b3310c77e28f92ef3c6 [INFO] running `Command { std: "docker" "start" "-a" "a68fbd657f705ba372cc99fc2a41e8be32ac9ea202130b3310c77e28f92ef3c6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a68fbd657f705ba372cc99fc2a41e8be32ac9ea202130b3310c77e28f92ef3c6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a68fbd657f705ba372cc99fc2a41e8be32ac9ea202130b3310c77e28f92ef3c6", kill_on_drop: false }` [INFO] [stdout] a68fbd657f705ba372cc99fc2a41e8be32ac9ea202130b3310c77e28f92ef3c6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 01b916f787d54a4ab82c37d2e0e8013da53238202b15281a714f151a0959753f [INFO] running `Command { std: "docker" "start" "-a" "01b916f787d54a4ab82c37d2e0e8013da53238202b15281a714f151a0959753f", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.106 [INFO] [stderr] Compiling memchr v2.8.0 [INFO] [stderr] Compiling hashbrown v0.17.0 [INFO] [stderr] Compiling equivalent v1.0.2 [INFO] [stderr] Compiling rustix v0.38.44 [INFO] [stderr] Compiling scratch v1.0.9 [INFO] [stderr] Compiling regex-syntax v0.8.10 [INFO] [stderr] Compiling linux-raw-sys v0.4.15 [INFO] [stderr] Compiling bitflags v2.11.1 [INFO] [stderr] Compiling unicode-width v0.2.2 [INFO] [stderr] Compiling cxxbridge-flags v1.0.194 [INFO] [stderr] Compiling humantime v2.3.0 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling link-cplusplus v1.0.12 [INFO] [stderr] Compiling home v0.5.12 [INFO] [stderr] Compiling is-terminal v0.4.17 [INFO] [stderr] Compiling foldhash v0.2.0 [INFO] [stderr] Compiling cxx v1.0.194 [INFO] [stderr] Compiling codespan-reporting v0.13.1 [INFO] [stderr] Compiling aho-corasick v1.1.4 [INFO] [stderr] Compiling quote v1.0.45 [INFO] [stderr] Compiling indexmap v2.14.0 [INFO] [stderr] Compiling syn v2.0.117 [INFO] [stderr] Compiling regex-automata v0.4.14 [INFO] [stderr] Compiling which v4.4.2 [INFO] [stderr] Compiling cxx-build v1.0.194 [INFO] [stderr] Compiling cxxbridge-macro v1.0.194 [INFO] [stderr] Compiling regex v1.12.3 [INFO] [stderr] Compiling env_logger v0.10.2 [INFO] [stderr] Compiling rdk-sys v0.1.1 (/opt/rustwide/workdir) [INFO] [stderr] warning: rdk-sys@0.1.1: In file included from /opt/rustwide/target/debug/build/rdk-sys-09f69ffa1fb9d3f1/out/cxxbridge/sources/rdk-sys/src/bindings/atom.rs.cc:1: [INFO] [stderr] warning: rdk-sys@0.1.1: /opt/rustwide/workdir/cpp/include/ro_mol.h:4:10: fatal error: GraphMol/GraphMol.h: No such file or directory [INFO] [stderr] warning: rdk-sys@0.1.1: 4 | #include [INFO] [stderr] warning: rdk-sys@0.1.1: | ^~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: rdk-sys@0.1.1: compilation terminated. [INFO] [stderr] error: failed to run custom build command for `rdk-sys v0.1.1 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/rdk-sys-bd98bd4106924f4d/build-script-build` (exit status: 1) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rerun-if-changed=src/bindings/atom.rs [INFO] [stderr] cargo:rerun-if-changed=src/bindings/mol_standardize.rs [INFO] [stderr] cargo:rerun-if-changed=src/bindings/descriptors.rs [INFO] [stderr] cargo:rerun-if-changed=src/bindings/rw_mol.rs [INFO] [stderr] cargo:rerun-if-changed=src/bindings/substruct_match.rs [INFO] [stderr] cargo:rerun-if-changed=src/bindings/ro_mol.rs [INFO] [stderr] cargo:rerun-if-changed=src/bindings/inchi.rs [INFO] [stderr] cargo:rerun-if-changed=src/bindings/fingerprint.rs [INFO] [stderr] cargo:CXXBRIDGE_PREFIX=rdk-sys [INFO] [stderr] cargo:CXXBRIDGE_DIR0=/opt/rustwide/target/debug/build/rdk-sys-09f69ffa1fb9d3f1/out/cxxbridge/include [INFO] [stderr] cargo:CXXBRIDGE_DIR1=/opt/rustwide/target/debug/build/rdk-sys-09f69ffa1fb9d3f1/out/cxxbridge/crate [INFO] [stderr] cargo:rerun-if-env-changed=CC_FORCE_DISABLE [INFO] [stderr] CC_FORCE_DISABLE = None [INFO] [stderr] cargo:rerun-if-env-changed=CXX_x86_64-unknown-linux-gnu [INFO] [stderr] CXX_x86_64-unknown-linux-gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=CXX_x86_64_unknown_linux_gnu [INFO] [stderr] CXX_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_CXX [INFO] [stderr] HOST_CXX = None [INFO] [stderr] cargo:rerun-if-env-changed=CXX [INFO] [stderr] CXX = None [INFO] [stderr] cargo:rerun-if-env-changed=CC_ENABLE_DEBUG_OUTPUT [INFO] [stderr] cargo:rerun-if-env-changed=CRATE_CC_NO_DEFAULTS [INFO] [stderr] CRATE_CC_NO_DEFAULTS = None [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS [INFO] [stderr] CXXFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_CXXFLAGS [INFO] [stderr] HOST_CXXFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS_x86_64_unknown_linux_gnu [INFO] [stderr] CXXFLAGS_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS_x86_64-unknown-linux-gnu [INFO] [stderr] CXXFLAGS_x86_64-unknown-linux-gnu = None [INFO] [stderr] cargo:warning=In file included from /opt/rustwide/target/debug/build/rdk-sys-09f69ffa1fb9d3f1/out/cxxbridge/sources/rdk-sys/src/bindings/atom.rs.cc:1: [INFO] [stderr] cargo:warning=/opt/rustwide/workdir/cpp/include/ro_mol.h:4:10: fatal error: GraphMol/GraphMol.h: No such file or directory [INFO] [stderr] cargo:warning= 4 | #include [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=compilation terminated. [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] [INFO] [stderr] CXX include path: [INFO] [stderr] /opt/rustwide/target/debug/build/rdk-sys-09f69ffa1fb9d3f1/out/cxxbridge/include [INFO] [stderr] /opt/rustwide/target/debug/build/rdk-sys-09f69ffa1fb9d3f1/out/cxxbridge/crate [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] error occurred in cc-rs: command did not execute successfully (status code exit status: 1): LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-g" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdk-sys-09f69ffa1fb9d3f1/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdk-sys-09f69ffa1fb9d3f1/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/workdir" "-w" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdk-sys-09f69ffa1fb9d3f1/out/c2955f6731273c3c-atom.rs.o" "-c" "/opt/rustwide/target/debug/build/rdk-sys-09f69ffa1fb9d3f1/out/cxxbridge/sources/rdk-sys/src/bindings/atom.rs.cc" [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "01b916f787d54a4ab82c37d2e0e8013da53238202b15281a714f151a0959753f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "01b916f787d54a4ab82c37d2e0e8013da53238202b15281a714f151a0959753f", kill_on_drop: false }` [INFO] [stdout] 01b916f787d54a4ab82c37d2e0e8013da53238202b15281a714f151a0959753f