[INFO] fetching crate ontolius 0.7.2... [INFO] testing ontolius-0.7.2 against master#562dee4820c458d823175268e41601d4c060588a for pr-154210-2 [INFO] extracting crate ontolius 0.7.2 into /workspace/builds/worker-7-tc1/source [INFO] started tweaking crates.io crate ontolius 0.7.2 [INFO] removed 0 missing tests [INFO] finished tweaking crates.io crate ontolius 0.7.2 [INFO] tweaked toml for crates.io crate ontolius 0.7.2 written to /workspace/builds/worker-7-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate ontolius 0.7.2 on toolchain 562dee4820c458d823175268e41601d4c060588a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate ontolius 0.7.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded pyo3-macros v0.24.2 [INFO] [stderr] Downloaded linereader v0.4.0 [INFO] [stderr] Downloaded curieosa v0.1.0 [INFO] [stderr] Downloaded delegate v0.8.0 [INFO] [stderr] Downloaded louds-rs v0.4.0 [INFO] [stderr] Downloaded fid-rs v0.1.1 [INFO] [stderr] Downloaded graph_builder v0.3.1 [INFO] [stderr] Downloaded pyo3-macros-backend v0.24.2 [INFO] [stderr] Downloaded pyo3-build-config v0.24.2 [INFO] [stderr] Downloaded serde_test v1.0.177 [INFO] [stderr] Downloaded pyo3-ffi v0.24.2 [INFO] [stderr] Downloaded trie-rs v0.1.1 [INFO] [stderr] Downloaded pyo3 v0.24.2 [INFO] [stderr] Downloaded obographs-dev v0.2.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 586a2677ea1bdc4f8c9e71dacefe0823c419696907cc183a762fce4ce4d36caa [INFO] running `Command { std: "docker" "start" "-a" "586a2677ea1bdc4f8c9e71dacefe0823c419696907cc183a762fce4ce4d36caa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "586a2677ea1bdc4f8c9e71dacefe0823c419696907cc183a762fce4ce4d36caa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "586a2677ea1bdc4f8c9e71dacefe0823c419696907cc183a762fce4ce4d36caa", kill_on_drop: false }` [INFO] [stdout] 586a2677ea1bdc4f8c9e71dacefe0823c419696907cc183a762fce4ce4d36caa [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 77aa2c754dd33971062ed0e8957c163eb318259da7e777bdf8d0fad2c53caa6d [INFO] running `Command { std: "docker" "start" "-a" "77aa2c754dd33971062ed0e8957c163eb318259da7e777bdf8d0fad2c53caa6d", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.105 [INFO] [stderr] Compiling quote v1.0.43 [INFO] [stderr] Compiling libc v0.2.180 [INFO] [stderr] Compiling parking_lot_core v0.9.12 [INFO] [stderr] Compiling smallvec v1.15.1 [INFO] [stderr] Compiling memchr v2.7.6 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling itoa v1.0.17 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling zmij v1.0.14 [INFO] [stderr] Compiling lock_api v0.4.14 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling graph_builder v0.3.1 [INFO] [stderr] Compiling hashbrown v0.14.5 [INFO] [stderr] Compiling arrayvec v0.7.6 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling serde_json v1.0.149 [INFO] [stderr] Compiling num-format v0.4.4 [INFO] [stderr] Compiling syn v2.0.114 [INFO] [stderr] Compiling linereader v0.4.0 [INFO] [stderr] Compiling atoi v2.0.0 [INFO] [stderr] Compiling memmap2 v0.5.10 [INFO] [stderr] Compiling num_cpus v1.17.0 [INFO] [stderr] Compiling dashmap v5.5.3 [INFO] [stderr] Compiling parking_lot v0.12.5 [INFO] [stderr] Compiling page_size v0.4.2 [INFO] [stderr] Compiling byte-slice-cast v1.2.3 [INFO] [stderr] Compiling atomic v0.5.3 [INFO] [stderr] Compiling fast-float v0.2.0 [INFO] [stderr] Compiling fid-rs v0.1.1 [INFO] [stderr] Compiling louds-rs v0.4.0 [INFO] [stderr] Compiling trie-rs v0.1.1 [INFO] [stderr] Compiling curieosa v0.1.0 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling delegate v0.8.0 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling obographs-dev v0.2.2 [INFO] [stderr] Compiling ontolius v0.7.2 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 27.57s [INFO] running `Command { std: "docker" "inspect" "77aa2c754dd33971062ed0e8957c163eb318259da7e777bdf8d0fad2c53caa6d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "77aa2c754dd33971062ed0e8957c163eb318259da7e777bdf8d0fad2c53caa6d", kill_on_drop: false }` [INFO] [stdout] 77aa2c754dd33971062ed0e8957c163eb318259da7e777bdf8d0fad2c53caa6d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 6a7e9bad295e4e2d1b9cb9088f829c4f57765d6fce6576535a1e669562e28c8e [INFO] running `Command { std: "docker" "start" "-a" "6a7e9bad295e4e2d1b9cb9088f829c4f57765d6fce6576535a1e669562e28c8e", kill_on_drop: false }` [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling syn v2.0.114 [INFO] [stderr] Compiling zerocopy v0.8.33 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling regex-syntax v0.8.8 [INFO] [stderr] Compiling anstyle v1.0.13 [INFO] [stderr] Compiling clap_lex v0.7.7 [INFO] [stderr] Compiling crc32fast v1.5.0 [INFO] [stderr] Compiling clap_builder v4.5.54 [INFO] [stderr] Compiling adler2 v2.0.1 [INFO] [stderr] Compiling simd-adler32 v0.3.8 [INFO] [stderr] Compiling miniz_oxide v0.8.9 [INFO] [stderr] Compiling is-terminal v0.4.17 [INFO] [stderr] Compiling flate2 v1.1.8 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling atoi v2.0.0 [INFO] [stderr] Compiling plotters v0.3.7 [INFO] [stderr] Compiling num-bigint v0.4.6 [INFO] [stderr] Compiling num-iter v0.1.45 [INFO] [stderr] Compiling regex-automata v0.4.13 [INFO] [stderr] Compiling fid-rs v0.1.1 [INFO] [stderr] Compiling clap v4.5.54 [INFO] [stderr] Compiling serde_json v1.0.149 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling louds-rs v0.4.0 [INFO] [stderr] Compiling trie-rs v0.1.1 [INFO] [stderr] Compiling curieosa v0.1.0 [INFO] [stderr] Compiling num v0.4.3 [INFO] [stderr] Compiling regex v1.12.2 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling zerocopy-derive v0.8.33 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling graph_builder v0.3.1 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling half v2.7.1 [INFO] [stderr] Compiling ciborium-ll v0.2.2 [INFO] [stderr] Compiling ciborium v0.2.2 [INFO] [stderr] Compiling tinytemplate v1.2.1 [INFO] [stderr] Compiling obographs-dev v0.2.2 [INFO] [stderr] Compiling serde_test v1.0.177 [INFO] [stderr] Compiling ontolius v0.7.2 (/opt/rustwide/workdir) [INFO] [stderr] Compiling criterion v0.5.1 [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 50.71s [INFO] running `Command { std: "docker" "inspect" "6a7e9bad295e4e2d1b9cb9088f829c4f57765d6fce6576535a1e669562e28c8e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6a7e9bad295e4e2d1b9cb9088f829c4f57765d6fce6576535a1e669562e28c8e", kill_on_drop: false }` [INFO] [stdout] 6a7e9bad295e4e2d1b9cb9088f829c4f57765d6fce6576535a1e669562e28c8e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 702ae15f5ea32d3102664274e7e418bca08e57acb06c05ce0465cd18e26f946f [INFO] running `Command { std: "docker" "start" "-a" "702ae15f5ea32d3102664274e7e418bca08e57acb06c05ce0465cd18e26f946f", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.20s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/ontolius-1fc57e34ea0088b3) [INFO] [stdout] [INFO] [stdout] running 19 tests [INFO] [stdout] test io::obographs::test_obographs::test_parse_synonym_type ... ok [INFO] [stdout] test term_id::test_comparison_and_ordering::known ... ok [INFO] [stdout] test term_id::test_comparison_and_ordering::known_other_prefixes ... ok [INFO] [stdout] test io::obographs::test_obographs::test_parse_synonym_type_no_good ... ok [INFO] [stdout] test term_id::test_comparison_and_ordering::known_vs_random ... ok [INFO] [stdout] test term_id::test_creation::test_term_id_from_curie ... ok [INFO] [stdout] test term_id::test_creation::test_term_id_from_tuple ... ok [INFO] [stdout] test term_id::test_known_prefix::display ... ok [INFO] [stdout] test term_id::test_equalities::test_partial_eq_to_str_tuple ... ok [INFO] [stdout] test term_id::test_prefix::hash_known_prefix ... ok [INFO] [stdout] test term_id::test_prefix::partial_eq_with_str ... ok [INFO] [stdout] test term_id::test_prefix::display ... ok [INFO] [stdout] test term_id::test_comparison_and_ordering::random ... ok [INFO] [stdout] test term_id::test_prefix::hash_unknown_prefix ... ok [INFO] [stdout] test term_id::test_sizes::test_size_of_inner_term_id ... ok [INFO] [stdout] test term_id::test_prefix::partial_eq ... ok [INFO] [stdout] test term_id::test_term_id_err::term_id_err_can_be_converted_into_anyhow_error ... ok [INFO] [stdout] test ontology::csr::beta::test_csr_ontology::test_debug ... ok [INFO] [stdout] test term_id::test_known_prefix::partial_eq_with_str ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 19 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Running tests/test_common.rs (/opt/rustwide/target/debug/deps/test_common-916a3f7a22f127db) [INFO] [stdout] [INFO] [stdout] running 4 tests [INFO] [stdout] test go_commons_are_accessible ... ok [INFO] [stdout] test hpo_commons_are_accessible ... ok [INFO] [stdout] test maxo_commons_are_accessible ... ok [INFO] [stdout] test uo_commons_are_accessible ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running tests/test_io.rs (/opt/rustwide/target/debug/deps/test_io-2f1523eea8bfd374) [INFO] [stdout] [INFO] [stdout] running 19 tests [INFO] [stdout] test human_phenotype_ontology::load_full_data ... ignored, just for interactive debugging [INFO] [stdout] test gene_ontology::iter_ancestor_ids ... ok [INFO] [stdout] test gene_ontology::we_get_expected_descendant_counts_for_go_subroots ... ok [INFO] [stdout] test gene_ontology::version_is_parsed ... ok [INFO] [stdout] test human_phenotype_ontology::test_iter_parent_ids ... ok [INFO] [stdout] test human_phenotype_ontology::test_iter_child_ids ... ok [INFO] [stdout] test human_phenotype_ontology::test_iter_term_and_child_ids ... ok [INFO] [stdout] test human_phenotype_ontology::test_iter_descendant_ids ... ok [INFO] [stdout] test human_phenotype_ontology::test_iter_term_and_ancestor_ids ... ok [INFO] [stdout] test human_phenotype_ontology::test_iter_ancestor_ids ... ok [INFO] [stdout] test human_phenotype_ontology::test_iter_term_and_descendant_ids ... ok [INFO] [stdout] test human_phenotype_ontology::test_iter_term_and_parent_ids ... ok [INFO] [stdout] test human_phenotype_ontology::version_is_parsed ... ok [INFO] [stdout] test medical_action_ontology::we_get_expected_descendant_counts_for_maxo_root ... ok [INFO] [stdout] test medical_action_ontology::iter_ancestor_ids ... ok [INFO] [stdout] test medical_action_ontology::version_is_not_parsed_from_the_toy_file - should panic ... ok [INFO] [stderr] Running tests/test_serde.rs (/opt/rustwide/target/debug/deps/test_serde-031541b4144a6358) [INFO] [stdout] test unit_measurement_ontology::version_parsing ... ok [INFO] [stdout] test unit_measurement_ontology::iter_ancestor_ids ... ok [INFO] [stdout] test unit_measurement_ontology::we_get_expected_descendant_counts_for_uo_root ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 18 passed; 0 failed; 1 ignored; 0 measured; 0 filtered out; finished in 21.94s [INFO] [stdout] [INFO] [stderr] Doc-tests ontolius [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 20 tests [INFO] [stdout] test src/io/obographs.rs - io::obographs::OntologyLoaderBuilder::obographs_parser (line 417) ... ok [INFO] [stdout] test src/term_id.rs - term_id::&'_TermId (line 147) ... ok [INFO] [stdout] test src/term_id.rs - term_id::Identified (line 14) ... ok [INFO] [stdout] test src/term_id.rs - term_id::Prefix (line 291) ... ok [INFO] [stdout] test src/term_id.rs - term_id::Prefix (line 317) ... ok [INFO] [stdout] test src/term_id.rs - term_id::Prefix (line 300) ... ok [INFO] [stdout] test src/term_id.rs - term_id::TermId (line 112) ... ok [INFO] [stdout] test src/term_id.rs - term_id::Prefix<'_> (line 345) ... ok [INFO] [stdout] test src/term_id.rs - term_id::TermId (line 166) ... ok [INFO] [stdout] test src/term_id.rs - term_id::TermId (line 178) ... ok [INFO] [stdout] test src/term_id.rs - term_id::TermId (line 33) ... ok [INFO] [stdout] test src/term_id.rs - term_id::TermId (line 188) ... ok [INFO] [stdout] test src/term_id.rs - term_id::TermId (line 50) ... ok [INFO] [stdout] test src/term_id.rs - term_id::TermId::prefix (line 216) ... ok [INFO] [stdout] test src/term_id.rs - term_id::TermId (line 93) ... ok [INFO] [stdout] test src/lib.rs - (line 62) ... ok [INFO] [stdout] test src/lib.rs - (line 91) ... ok [INFO] [stdout] test src/ontology/mod.rs - ontology::csr (line 10) ... ok [INFO] [stdout] test src/lib.rs - (line 19) ... ok [INFO] [stdout] test src/lib.rs - (line 128) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 20 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 8.03s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "702ae15f5ea32d3102664274e7e418bca08e57acb06c05ce0465cd18e26f946f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "702ae15f5ea32d3102664274e7e418bca08e57acb06c05ce0465cd18e26f946f", kill_on_drop: false }` [INFO] [stdout] 702ae15f5ea32d3102664274e7e418bca08e57acb06c05ce0465cd18e26f946f