[INFO] fetching crate noodles-fasta 0.60.0... [INFO] testing noodles-fasta-0.60.0 against master#562dee4820c458d823175268e41601d4c060588a for pr-154210-2 [INFO] extracting crate noodles-fasta 0.60.0 into /workspace/builds/worker-1-tc1/source [INFO] started tweaking crates.io crate noodles-fasta 0.60.0 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate noodles-fasta 0.60.0 [INFO] tweaked toml for crates.io crate noodles-fasta 0.60.0 written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate noodles-fasta 0.60.0 on toolchain 562dee4820c458d823175268e41601d4c060588a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate noodles-fasta 0.60.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded zlib-rs v0.6.2 [INFO] [stderr] Downloaded noodles-bgzf v0.46.0 [INFO] [stderr] Downloaded noodles-core v0.19.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ecb74d53f1148ffdcbef3f56b6fc42fb60e60870723a435cb335679df2adfed5 [INFO] running `Command { std: "docker" "start" "-a" "ecb74d53f1148ffdcbef3f56b6fc42fb60e60870723a435cb335679df2adfed5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ecb74d53f1148ffdcbef3f56b6fc42fb60e60870723a435cb335679df2adfed5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ecb74d53f1148ffdcbef3f56b6fc42fb60e60870723a435cb335679df2adfed5", kill_on_drop: false }` [INFO] [stdout] ecb74d53f1148ffdcbef3f56b6fc42fb60e60870723a435cb335679df2adfed5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 617e1ddc739f45c26e9cedabd94e588f30e578c9d061522b2922886bf50f6ac3 [INFO] running `Command { std: "docker" "start" "-a" "617e1ddc739f45c26e9cedabd94e588f30e578c9d061522b2922886bf50f6ac3", kill_on_drop: false }` [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Compiling zlib-rs v0.6.2 [INFO] [stderr] Compiling bstr v1.12.1 [INFO] [stderr] Compiling crossbeam-channel v0.5.15 [INFO] [stderr] Compiling noodles-core v0.19.0 [INFO] [stderr] Compiling flate2 v1.1.9 [INFO] [stderr] Compiling noodles-bgzf v0.46.0 [INFO] [stderr] Compiling noodles-fasta v0.60.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 8.78s [INFO] running `Command { std: "docker" "inspect" "617e1ddc739f45c26e9cedabd94e588f30e578c9d061522b2922886bf50f6ac3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "617e1ddc739f45c26e9cedabd94e588f30e578c9d061522b2922886bf50f6ac3", kill_on_drop: false }` [INFO] [stdout] 617e1ddc739f45c26e9cedabd94e588f30e578c9d061522b2922886bf50f6ac3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 019fa25be0dcf1ee0c6158f31140eaa9d439355e56e79e93503a45e947d50563 [INFO] running `Command { std: "docker" "start" "-a" "019fa25be0dcf1ee0c6158f31140eaa9d439355e56e79e93503a45e947d50563", kill_on_drop: false }` [INFO] [stderr] Compiling quote v1.0.44 [INFO] [stderr] Compiling syn v2.0.117 [INFO] [stderr] Compiling tokio-macros v2.6.0 [INFO] [stderr] Compiling tokio v1.49.0 [INFO] [stderr] Compiling noodles-fasta v0.60.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 12.10s [INFO] running `Command { std: "docker" "inspect" "019fa25be0dcf1ee0c6158f31140eaa9d439355e56e79e93503a45e947d50563", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "019fa25be0dcf1ee0c6158f31140eaa9d439355e56e79e93503a45e947d50563", kill_on_drop: false }` [INFO] [stdout] 019fa25be0dcf1ee0c6158f31140eaa9d439355e56e79e93503a45e947d50563 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 431c2dd0688446e177705ae1a8bfb95ad67819f7721e1bbcf65ca8c04c54c90f [INFO] running `Command { std: "docker" "start" "-a" "431c2dd0688446e177705ae1a8bfb95ad67819f7721e1bbcf65ca8c04c54c90f", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.09s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_fasta-d5634239ac18f0d9) [INFO] [stdout] [INFO] [stdout] running 19 tests [INFO] [stdout] test io::indexed_reader::builder::tests::test_build_index_src ... ok [INFO] [stdout] test io::indexer::tests::test_index_record_with_empty_sequence ... ok [INFO] [stdout] test io::indexer::tests::test_index_record_with_invalid_line_bases ... ok [INFO] [stdout] test io::indexer::tests::test_index_record_with_invalid_line_width ... ok [INFO] [stdout] test io::reader::sequence::tests::test_read_sequence ... ok [INFO] [stdout] test fai::record::tests::test_from_str ... ok [INFO] [stdout] test io::indexer::tests::test_consume_sequence_line ... ok [INFO] [stdout] test io::reader::sequence::tests::test_read_sequence_limit ... ok [INFO] [stdout] test io::reader::tests::test_read_definition ... ok [INFO] [stdout] test io::reader::tests::test_read_line ... ok [INFO] [stdout] test io::writer::record::sequence::tests::test_write_sequence ... ok [INFO] [stdout] test io::writer::record::definition::tests::test_write_definition ... ok [INFO] [stdout] test io::writer::tests::test_new ... ok [INFO] [stdout] test record::sequence::complement::tests::test_complement ... ok [INFO] [stdout] test record::sequence::complement::tests::test_next ... ok [INFO] [stdout] test record::definition::tests::test_fmt ... ok [INFO] [stdout] test record::definition::tests::test_from_str ... ok [INFO] [stdout] test repository::tests::test_get ... ok [INFO] [stderr] Doc-tests noodles_fasta [INFO] [stdout] test repository::adapters::empty::tests::test_get ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 19 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 58 tests [INFO] [stdout] test src/fai/fs.rs - fai::fs::read (line 21) - compile ... ok [INFO] [stdout] test src/fai/fs.rs - fai::fs::write (line 41) - compile ... ok [INFO] [stdout] test src/fai/io/reader.rs - fai::io::reader::Reader::get_mut (line 29) ... ok [INFO] [stdout] test src/fai/io/reader.rs - fai::io::reader::Reader::get_ref (line 15) ... ok [INFO] [stdout] test src/fai/io/reader.rs - fai::io::reader::Reader::new (line 62) ... ok [INFO] [stdout] test src/fai/io/writer.rs - fai::io::writer::Writer::write_index (line 74) ... ok [INFO] [stdout] test src/fai/io/writer.rs - fai::io::writer::Writer::get_mut (line 29) ... ok [INFO] [stdout] test src/fai/io/reader.rs - fai::io::reader::Reader::into_inner (line 43) ... ok [INFO] [stdout] test src/fai/io/writer.rs - fai::io::writer::Writer::new (line 62) ... ok [INFO] [stdout] test src/fai/io/reader.rs - fai::io::reader::Reader::read_index (line 77) ... ok [INFO] [stdout] test src/fai/io/writer.rs - fai::io::writer::Writer::get_ref (line 15) ... ok [INFO] [stdout] test src/fai/io/writer.rs - fai::io::writer::Writer::into_inner (line 43) ... ok [INFO] [stdout] test src/fai/record.rs - fai::record::Record::line_bases (line 88) ... ok [INFO] [stdout] test src/fai/record.rs - fai::record::Record::new (line 28) ... ok [INFO] [stdout] test src/fs/index.rs - fs::index::index (line 9) - compile ... ok [INFO] [stdout] test src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::build_from_path (line 38) - compile ... ok [INFO] [stdout] test src/fai/record.rs - fai::record::Record::query (line 114) ... ok [INFO] [stdout] test src/fai/record.rs - fai::record::Record::length (line 62) ... ok [INFO] [stdout] test src/fai/record.rs - fai::record::Record::name (line 49) ... ok [INFO] [stdout] test src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::set_index (line 24) ... ok [INFO] [stdout] test src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::build_from_reader (line 73) ... ok [INFO] [stdout] test src/fai/record.rs - fai::record::Record::line_width (line 101) ... ok [INFO] [stdout] test src/io/indexer.rs - io::indexer::Indexer::index_record (line 65) ... ok [INFO] [stdout] test src/io/reader.rs - io::reader::Reader::get_mut (line 43) ... ok [INFO] [stdout] test src/io/reader.rs - io::reader::Reader::new (line 76) ... ok [INFO] [stdout] test src/io/reader.rs - io::reader::Reader::query (line 215) ... ok [INFO] [stdout] test src/fai/record.rs - fai::record::Record::offset (line 75) ... ok [INFO] [stdout] test src/io/indexer.rs - io::indexer::Indexer::new (line 31) ... ok [INFO] [stdout] test src/io/reader.rs - io::reader::Reader::get_ref (line 29) ... ok [INFO] [stdout] test src/io/reader.rs - io::reader::Reader::into_inner (line 57) ... ok [INFO] [stdout] test src/io/reader.rs - io::reader::Reader::records (line 180) ... ok [INFO] [stdout] test src/io/writer.rs - io::writer::Writer::into_inner (line 51) ... ok [INFO] [stdout] test src/io/reader.rs - io::reader::Reader::read_definition (line 98) ... ok [INFO] [stdout] test src/io/writer/builder.rs - io::writer::builder::Builder::build_from_path (line 36) - compile ... ok [INFO] [stdout] test src/io/writer.rs - io::writer::Writer::get_mut (line 37) ... ok [INFO] [stdout] test src/io/reader.rs - io::reader::Reader::sequence_reader (line 156) ... ok [INFO] [stdout] test src/io/reader.rs - io::reader::Reader::read_sequence (line 128) ... ok [INFO] [stdout] test src/lib.rs - (line 33) - compile ... ok [INFO] [stdout] test src/io/writer.rs - io::writer::Writer::get_ref (line 23) ... ok [INFO] [stdout] test src/io/writer.rs - io::writer::Writer::write_record (line 85) ... ok [INFO] [stdout] test src/io/writer.rs - io::writer::Writer::new (line 70) ... ok [INFO] [stdout] test src/record.rs - record::Record::name (line 56) ... ok [INFO] [stdout] test src/record.rs - record::Record::description (line 73) ... ok [INFO] [stdout] test src/record.rs - record::Record::definition (line 39) ... ok [INFO] [stdout] test src/io/writer/builder.rs - io::writer::builder::Builder::build_from_writer (line 52) ... ok [INFO] [stdout] test src/io/writer/builder.rs - io::writer::builder::Builder::set_line_base_count (line 23) ... ok [INFO] [stdout] test src/record/definition.rs - record::definition::Definition::description (line 58) ... ok [INFO] [stdout] test src/record/sequence.rs - record::sequence::Sequence::complement (line 132) ... ok [INFO] [stdout] test src/record.rs - record::Record::new (line 22) ... ok [INFO] [stdout] test src/record/definition.rs - record::definition::Definition::name (line 45) ... ok [INFO] [stdout] test src/record/definition.rs - record::definition::Definition::new (line 27) ... ok [INFO] [stdout] test src/record/sequence.rs - record::sequence::Sequence::slice (line 79) ... ok [INFO] [stdout] test src/record/sequence.rs - record::sequence::Sequence::complement (line 121) ... ok [INFO] [stdout] test src/record.rs - record::Record::sequence (line 91) ... ok [INFO] [stdout] test src/record/sequence.rs - record::sequence::Sequence::is_empty (line 33) ... ok [INFO] [stdout] test src/record/sequence.rs - record::sequence::Sequence::len (line 20) ... ok [INFO] [stdout] test src/record/sequence.rs - record::sequence::Sequence::get (line 46) ... ok [INFO] [stdout] test src/repository/adapters/indexed_reader.rs - repository::adapters::indexed_reader::IndexedReader::new (line 20) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 58 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s [INFO] [stdout] [INFO] [stdout] all doctests ran in 1.03s; merged doctests compilation took 0.99s [INFO] running `Command { std: "docker" "inspect" "431c2dd0688446e177705ae1a8bfb95ad67819f7721e1bbcf65ca8c04c54c90f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "431c2dd0688446e177705ae1a8bfb95ad67819f7721e1bbcf65ca8c04c54c90f", kill_on_drop: false }` [INFO] [stdout] 431c2dd0688446e177705ae1a8bfb95ad67819f7721e1bbcf65ca8c04c54c90f