[INFO] fetching crate nj 0.0.22...
[INFO] testing nj-0.0.22 against master#562dee4820c458d823175268e41601d4c060588a for pr-154210-2
[INFO] extracting crate nj 0.0.22 into /workspace/builds/worker-6-tc1/source
[INFO] started tweaking crates.io crate nj 0.0.22
[INFO] finished tweaking crates.io crate nj 0.0.22
[INFO] tweaked toml for crates.io crate nj 0.0.22 written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate nj 0.0.22 on toolchain 562dee4820c458d823175268e41601d4c060588a
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate nj 0.0.22 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded nanorand v0.8.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] e3f2d226e6e13c2f84355f0f8e8f4afc87d8ec2ceca5e4f902ad23189e05bb47
[INFO] running `Command { std: "docker" "start" "-a" "e3f2d226e6e13c2f84355f0f8e8f4afc87d8ec2ceca5e4f902ad23189e05bb47", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e3f2d226e6e13c2f84355f0f8e8f4afc87d8ec2ceca5e4f902ad23189e05bb47", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e3f2d226e6e13c2f84355f0f8e8f4afc87d8ec2ceca5e4f902ad23189e05bb47", kill_on_drop: false }`
[INFO] [stdout] e3f2d226e6e13c2f84355f0f8e8f4afc87d8ec2ceca5e4f902ad23189e05bb47
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 7fd695f50cc7c935d42ae9b126fb72428d567bc216ba945eb325656577028d8a
[INFO] running `Command { std: "docker" "start" "-a" "7fd695f50cc7c935d42ae9b126fb72428d567bc216ba945eb325656577028d8a", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.106
[INFO] [stderr]    Compiling unicode-ident v1.0.24
[INFO] [stderr]    Compiling quote v1.0.45
[INFO] [stderr]    Compiling radium v0.7.0
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]    Compiling libc v0.2.183
[INFO] [stderr]    Compiling termcolor v1.4.1
[INFO] [stderr]    Compiling tap v1.0.1
[INFO] [stderr]    Compiling funty v2.0.0
[INFO] [stderr]    Compiling wyz v0.5.1
[INFO] [stderr]    Compiling nanorand v0.8.0
[INFO] [stderr]    Compiling bitvec v1.0.1
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling getrandom v0.2.17
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling ts-rs-macros v11.1.0
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling ts-rs v11.1.0
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling nj v0.0.22 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 22.44s
[INFO] running `Command { std: "docker" "inspect" "7fd695f50cc7c935d42ae9b126fb72428d567bc216ba945eb325656577028d8a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7fd695f50cc7c935d42ae9b126fb72428d567bc216ba945eb325656577028d8a", kill_on_drop: false }`
[INFO] [stdout] 7fd695f50cc7c935d42ae9b126fb72428d567bc216ba945eb325656577028d8a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 112a9765dce828a03dadb8294ddfa99cdcf6b95c02b6821e058267da275d2ead
[INFO] running `Command { std: "docker" "start" "-a" "112a9765dce828a03dadb8294ddfa99cdcf6b95c02b6821e058267da275d2ead", kill_on_drop: false }`
[INFO] [stderr]    Compiling nj v0.0.22 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 4.35s
[INFO] running `Command { std: "docker" "inspect" "112a9765dce828a03dadb8294ddfa99cdcf6b95c02b6821e058267da275d2ead", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "112a9765dce828a03dadb8294ddfa99cdcf6b95c02b6821e058267da275d2ead", kill_on_drop: false }`
[INFO] [stdout] 112a9765dce828a03dadb8294ddfa99cdcf6b95c02b6821e058267da275d2ead
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 3d99e7ad2b64605ecb826c84d9b150853721ac6750a24784c4906302a83c16f6
[INFO] running `Command { std: "docker" "start" "-a" "3d99e7ad2b64605ecb826c84d9b150853721ac6750a24784c4906302a83c16f6", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.09s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/nj-ed163bc88653d8b5)
[INFO] [stdout] 
[INFO] [stdout] running 114 tests
[INFO] [stdout] test alphabet::tests::test_dna_encoding ... ok
[INFO] [stdout] test alphabet::tests::test_dna_macro_gap_and_n ... ok
[INFO] [stdout] test alphabet::tests::test_dna_macro_empty ... ok
[INFO] [stdout] test alphabet::tests::test_dna_macro_lowercase ... ok
[INFO] [stdout] test alphabet::tests::test_dna_macro_length ... ok
[INFO] [stdout] test alphabet::tests::test_dna_macro_produces_correct_symbols ... ok
[INFO] [stdout] test alphabet::tests::test_protein_encoding ... ok
[INFO] [stdout] test alphabet::tests::test_protein_macro_empty ... ok
[INFO] [stdout] test alphabet::tests::test_protein_macro_gap_and_unknown ... ok
[INFO] [stdout] test alphabet::tests::test_protein_macro_length ... ok
[INFO] [stdout] test alphabet::tests::test_protein_macro_produces_correct_symbols ... ok
[INFO] [stdout] test distance_matrix::tests::test_dist_from_msa_basic ... ok
[INFO] [stdout] test distance_matrix::tests::test_dist_empty_with_names_zero_dim ... ok
[INFO] [stdout] test distance_matrix::tests::test_dist_from_msa_no_overlap ... ok
[INFO] [stdout] test distance_matrix::tests::test_dist_set_get_and_dim ... ok
[INFO] [stdout] test distance_matrix::tests::test_dist_symmetry_invariant ... ok
[INFO] [stdout] test distance_matrix::tests::test_neighbor_joining_empty_matrix_returns_error ... ok
[INFO] [stdout] test distance_matrix::tests::test_neighbor_joining_one_taxon ... ok
[INFO] [stdout] test alphabet::export_bindings_alphabet ... ok
[INFO] [stdout] test distance_matrix::tests::test_neighbor_joining_three_taxa_preserves_leaves ... ok
[INFO] [stdout] test distance_matrix::tests::test_neighbor_joining_two_taxa ... ok
[INFO] [stdout] test distance_matrix::tests::test_to_newick_produces_valid_format ... ok
[INFO] [stdout] test distance_matrix::tests::test_two_taxa_branch_length_sum ... ok
[INFO] [stdout] test distance_matrix::tests::test_dist_from_msa_gap_positions_excluded_from_denominator ... ok
[INFO] [stdout] test fasta::tests::test_parse_fasta_blank_lines_ignored ... ok
[INFO] [stdout] test fasta::tests::test_parse_fasta_empty_input_errors ... ok
[INFO] [stdout] test fasta::tests::test_parse_fasta_header_trimmed ... ok
[INFO] [stdout] test fasta::tests::test_parse_fasta_header_with_no_sequence_errors ... ok
[INFO] [stdout] test fasta::tests::test_parse_fasta_inconsistent_lengths_errors ... ok
[INFO] [stdout] test fasta::tests::test_parse_fasta_multiline_sequence ... ok
[INFO] [stdout] test fasta::tests::test_parse_fasta_sequence_before_header_errors ... ok
[INFO] [stdout] test fasta::tests::test_parse_fasta_simple ... ok
[INFO] [stdout] test config::export_bindings_sequenceobject ... ok
[INFO] [stdout] test models::tests::test_jukes_cantor_dna ... ok
[INFO] [stdout] test models::tests::test_jukes_cantor_identical ... ok
[INFO] [stdout] test models::tests::test_jukes_cantor_saturated_returns_infinity ... ok
[INFO] [stdout] test models::tests::test_kimura2p_identical ... ok
[INFO] [stdout] test models::tests::test_kimura2p_mixed ... ok
[INFO] [stdout] test models::tests::test_kimura2p_pure_transitions ... ok
[INFO] [stdout] test models::tests::test_kimura2p_pure_transversions ... ok
[INFO] [stdout] test models::tests::test_kimura2p_saturated_transversions_returns_infinity ... ok
[INFO] [stdout] test models::tests::test_pdiff_dna_gapped_positions_excluded_from_denominator ... ok
[INFO] [stdout] test models::tests::test_pdiff_dna_identical ... ok
[INFO] [stdout] test models::tests::test_pdiff_dna_two_differences ... ok
[INFO] [stdout] test models::tests::test_pdiff_protein_gaps_not_counted_as_differences ... ok
[INFO] [stdout] test models::tests::test_pdiff_protein_identical ... ok
[INFO] [stdout] test config::export_bindings_njresult ... ok
[INFO] [stdout] test models::tests::test_pdiff_protein_one_difference ... ok
[INFO] [stdout] test models::tests::test_poisson_fully_different_returns_infinity ... ok
[INFO] [stdout] test models::tests::test_poisson_gaps_not_counted_as_differences ... ok
[INFO] [stdout] test models::tests::test_poisson_identical ... ok
[INFO] [stdout] test models::tests::test_poisson_one_difference ... ok
[INFO] [stdout] test msa::tests::test_msa_bootstrap ... ok
[INFO] [stdout] test msa::tests::test_msa_bootstrap_protein ... ok
[INFO] [stdout] test msa::tests::test_msa_from_iterator ... ok
[INFO] [stdout] test msa::tests::test_msa_from_iterator_protein ... ok
[INFO] [stdout] test msa::tests::test_msa_from_unnamed_sequences ... ok
[INFO] [stdout] test msa::tests::test_msa_from_unnamed_sequences_protein ... ok
[INFO] [stdout] test msa::tests::test_msa_into_dist_dna ... ok
[INFO] [stdout] test msa::tests::test_msa_into_dist_protein ... ok
[INFO] [stdout] test msa::tests::test_msa_into_iterator ... ok
[INFO] [stdout] test msa::tests::test_msa_into_iterator_protein ... ok
[INFO] [stdout] test msa::tests::test_msa_is_empty_protein ... ok
[INFO] [stdout] test msa::tests::test_msa_is_empty ... ok
[INFO] [stdout] test msa::tests::test_msa_protein ... ok
[INFO] [stdout] test msa::tests::test_msa_push_and_len ... ok
[INFO] [stdout] test msa::tests::test_msa_push_rejects_ragged_alignment ... ok
[INFO] [stdout] test msa::tests::test_msa_to_index_map ... ok
[INFO] [stdout] test msa::tests::test_msa_to_index_map_protein ... ok
[INFO] [stdout] test nj::tests::test_nj_simple ... ok
[INFO] [stdout] test tests::test_average_distance_empty_msa_errors ... ok
[INFO] [stdout] test tests::test_average_distance_identical_sequences_zero ... ok
[INFO] [stdout] test tests::test_average_distance_incompatible_model_errors ... ok
[INFO] [stdout] test tests::test_average_distance_jukes_cantor_dna ... ok
[INFO] [stdout] test tests::test_average_distance_three_taxa_known_value ... ok
[INFO] [stdout] test config::export_bindings_distconfig ... ok
[INFO] [stdout] test tests::test_detect_alphabet_dna ... ok
[INFO] [stdout] test tests::test_detect_alphabet_dna_iupac ... ok
[INFO] [stdout] test tests::test_detect_alphabet_protein ... ok
[INFO] [stdout] test tests::test_distance_matrix_empty_msa_errors ... ok
[INFO] [stdout] test tests::test_average_distance_two_taxa_equals_pairwise ... ok
[INFO] [stdout] test tests::test_distance_matrix_diagonal_zero ... ok
[INFO] [stdout] test tests::test_distance_matrix_identical_sequences_zero ... ok
[INFO] [stdout] test tests::test_distance_matrix_incompatible_model_errors ... ok
[INFO] [stdout] test tests::test_distance_matrix_jukes_cantor_dna ... ok
[INFO] [stdout] test tests::test_distance_matrix_kimura2p_dna ... ok
[INFO] [stdout] test tests::test_distance_matrix_names_and_shape ... ok
[INFO] [stdout] test tests::test_distance_matrix_pdiff_known_value ... ok
[INFO] [stdout] test event::export_bindings_njevent ... ok
[INFO] [stdout] test tests::test_distance_matrix_pdiff_protein ... ok
[INFO] [stdout] test tests::test_distance_matrix_poisson_protein ... ok
[INFO] [stdout] test tests::test_nj_deterministic_order ... ok
[INFO] [stdout] test tests::test_nj_result_distance_matrix_consistent_with_newick ... ok
[INFO] [stdout] test tests::test_distance_matrix_symmetric ... ok
[INFO] [stdout] test tests::test_nj_result_include_average_distance ... ok
[INFO] [stdout] test tests::test_nj_result_include_both ... ok
[INFO] [stdout] test tests::test_nj_result_include_distance_matrix ... ok
[INFO] [stdout] test tests::test_nj_result_no_extras_by_default ... ok
[INFO] [stdout] test tests::test_nj_wrapper_adds_semicolon ... ok
[INFO] [stdout] test tests::test_nj_wrapper_empty_msa ... ok
[INFO] [stdout] test tests::test_nj_wrapper_incorrect_model_for_alphabet ... ok
[INFO] [stdout] test tests::test_nj_wrapper_incorrect_model_for_protein ... ok
[INFO] [stdout] test tests::test_nj_wrapper_simple_tree ... ok
[INFO] [stdout] test tree::tests::test_internal_node_branch_lengths_three_decimals ... ok
[INFO] [stdout] test models::export_bindings_substitutionmodel ... ok
[INFO] [stdout] test tree::tests::test_internal_node_bootstrap_support_label ... ok
[INFO] [stdout] test distance_matrix::export_bindings_distanceresult ... ok
[INFO] [stdout] test event::export_bindings_loglevel ... ok
[INFO] [stdout] test tree::tests::test_internal_node_no_support_label ... ok
[INFO] [stdout] test tree::tests::test_nested_tree_newick ... ok
[INFO] [stdout] test config::export_bindings_njconfig ... ok
[INFO] [stdout] test tree::tests::test_zero_branch_length_newick ... ok
[INFO] [stdout] test tree::tests::test_leaf_newick_no_branch_length ... ok
[INFO] [stdout] test tree::tests::test_leaf_newick_with_branch_length ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 114 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/nj-f10f94b0ed8c4da3)
[INFO] [stderr]    Doc-tests nj
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "3d99e7ad2b64605ecb826c84d9b150853721ac6750a24784c4906302a83c16f6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3d99e7ad2b64605ecb826c84d9b150853721ac6750a24784c4906302a83c16f6", kill_on_drop: false }`
[INFO] [stdout] 3d99e7ad2b64605ecb826c84d9b150853721ac6750a24784c4906302a83c16f6