[INFO] fetching crate pdbrust 0.7.0... [INFO] testing pdbrust-0.7.0 against try#dec9417b8611e34e787a3e4c37686b5131f9e5c5 for pr-154210-1 [INFO] extracting crate pdbrust 0.7.0 into /workspace/builds/worker-3-tc2/source [INFO] started tweaking crates.io crate pdbrust 0.7.0 [INFO] removed 0 missing examples [INFO] removed 0 missing tests [INFO] finished tweaking crates.io crate pdbrust 0.7.0 [INFO] tweaked toml for crates.io crate pdbrust 0.7.0 written to /workspace/builds/worker-3-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate pdbrust 0.7.0 on toolchain dec9417b8611e34e787a3e4c37686b5131f9e5c5 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate pdbrust 0.7.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 790cbc648611f4b92319737794477be28c7bd628ec5a0d89ceb2f755f2498aac [INFO] running `Command { std: "docker" "start" "-a" "790cbc648611f4b92319737794477be28c7bd628ec5a0d89ceb2f755f2498aac", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "790cbc648611f4b92319737794477be28c7bd628ec5a0d89ceb2f755f2498aac", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "790cbc648611f4b92319737794477be28c7bd628ec5a0d89ceb2f755f2498aac", kill_on_drop: false }` [INFO] [stdout] 790cbc648611f4b92319737794477be28c7bd628ec5a0d89ceb2f755f2498aac [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4f648a9674fe20a7ba35e78c343070e0876960fdc21ea2edd35520cc595baa6b [INFO] running `Command { std: "docker" "start" "-a" "4f648a9674fe20a7ba35e78c343070e0876960fdc21ea2edd35520cc595baa6b", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.94 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling syn v2.0.100 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling pdbrust v0.7.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 7.37s [INFO] running `Command { std: "docker" "inspect" "4f648a9674fe20a7ba35e78c343070e0876960fdc21ea2edd35520cc595baa6b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4f648a9674fe20a7ba35e78c343070e0876960fdc21ea2edd35520cc595baa6b", kill_on_drop: false }` [INFO] [stdout] 4f648a9674fe20a7ba35e78c343070e0876960fdc21ea2edd35520cc595baa6b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 2350a42188a923a19e26616f2d8ebf48a9d38307a18e01440233e5babf8b28a9 [INFO] running `Command { std: "docker" "start" "-a" "2350a42188a923a19e26616f2d8ebf48a9d38307a18e01440233e5babf8b28a9", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.171 [INFO] [stderr] Compiling autocfg v1.4.0 [INFO] [stderr] Compiling once_cell v1.21.1 [INFO] [stderr] Compiling stable_deref_trait v1.2.0 [INFO] [stderr] Compiling syn v2.0.100 [INFO] [stderr] Compiling cc v1.2.17 [INFO] [stderr] Compiling litemap v0.7.5 [INFO] [stderr] Compiling bitflags v2.9.0 [INFO] [stderr] Compiling writeable v0.5.5 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling icu_locid_transform_data v1.5.0 [INFO] [stderr] Compiling icu_properties_data v1.5.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Compiling openssl v0.10.71 [INFO] [stderr] Compiling http v0.2.12 [INFO] [stderr] Compiling serde_json v1.0.140 [INFO] [stderr] Compiling smallvec v1.14.0 [INFO] [stderr] 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[stderr] Compiling url v2.5.4 [INFO] [stderr] Compiling reqwest v0.11.27 [INFO] [stderr] Compiling codecov v0.4.0 [INFO] [stdout] error[E0432]: unresolved import `pdbrust::geometry` [INFO] [stdout] --> examples/geometry_demo.rs:11:14 [INFO] [stdout] | [INFO] [stdout] 11 | use pdbrust::geometry::AtomSelection; [INFO] [stdout] | ^^^^^^^^ could not find `geometry` in `pdbrust` [INFO] [stdout] | [INFO] [stdout] note: found an item that was configured out [INFO] [stdout] --> src/lib.rs:314:9 [INFO] [stdout] | [INFO] [stdout] 313 | #[cfg(feature = "geometry")] [INFO] [stdout] | -------------------- the item is gated behind the `geometry` feature [INFO] [stdout] 314 | pub mod geometry; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0432]: unresolved import `pdbrust::dockq` [INFO] [stdout] --> examples/dockq_detailed_comparison.rs:8:14 [INFO] [stdout] | [INFO] [stdout] 8 | use pdbrust::dockq::{ChainMappingStrategy, DockQOptions}; [INFO] [stdout] | ^^^^^ could not find `dockq` in `pdbrust` [INFO] [stdout] | [INFO] [stdout] note: found an item that was configured out [INFO] [stdout] --> src/lib.rs:323:9 [INFO] [stdout] | [INFO] [stdout] 322 | #[cfg(feature = "dockq")] [INFO] [stdout] | ----------------- the item is gated behind the `dockq` feature [INFO] [stdout] 323 | pub mod dockq; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `b_factor_mean` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/b_factor_demo.rs:35:28 [INFO] [stdout] | [INFO] [stdout] 35 | let mean_b = structure.b_factor_mean(); [INFO] [stdout] | ^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `b_factor_mean_ca` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/b_factor_demo.rs:36:31 [INFO] [stdout] | [INFO] [stdout] 36 | let mean_b_ca = structure.b_factor_mean_ca(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `b_factor_min` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/b_factor_demo.rs:37:27 [INFO] [stdout] | [INFO] [stdout] 37 | let min_b = structure.b_factor_min(); [INFO] [stdout] | ^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `b_factor_max` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/b_factor_demo.rs:38:27 [INFO] [stdout] | [INFO] [stdout] 38 | let max_b = structure.b_factor_max(); [INFO] [stdout] | ^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `b_factor_std` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/b_factor_demo.rs:39:27 [INFO] [stdout] | [INFO] [stdout] 39 | let std_b = structure.b_factor_std(); [INFO] [stdout] | ^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `b_factor_profile` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/b_factor_demo.rs:53:29 [INFO] [stdout] | [INFO] [stdout] 53 | let profile = structure.b_factor_profile(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0432]: unresolved import `pdbrust::summary` [INFO] [stdout] --> examples/batch_processing.rs:15:14 [INFO] [stdout] | [INFO] [stdout] 15 | use pdbrust::summary::{StructureSummary, batch_summarize, summaries_to_csv}; [INFO] [stdout] | ^^^^^^^ could not find `summary` in `pdbrust` [INFO] [stdout] | [INFO] [stdout] note: found an item that was configured out [INFO] [stdout] --> src/lib.rs:308:9 [INFO] [stdout] | [INFO] [stdout] 307 | #[cfg(feature = "summary")] [INFO] [stdout] | ------------------- the item is gated behind the `summary` feature [INFO] [stdout] 308 | pub mod summary; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `flexible_residues` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/b_factor_demo.rs:82:30 [INFO] [stdout] | [INFO] [stdout] 82 | let flexible = structure.flexible_residues(threshold_high); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] help: there is a method `get_residues` with a similar name, but with different arguments [INFO] [stdout] --> src/core/pdb.rs:231:5 [INFO] [stdout] | [INFO] [stdout] 231 | pub fn get_residues(&self) -> Vec<(i32, String)> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0432]: unresolved import `pdbrust::dockq` [INFO] [stdout] --> examples/dockq_demo.rs:11:14 [INFO] [stdout] | [INFO] [stdout] 11 | use pdbrust::dockq::{ChainMappingStrategy, DockQOptions}; [INFO] [stdout] | ^^^^^ could not find `dockq` in `pdbrust` [INFO] [stdout] | [INFO] [stdout] note: found an item that was configured out [INFO] [stdout] --> src/lib.rs:323:9 [INFO] [stdout] | [INFO] [stdout] 322 | #[cfg(feature = "dockq")] [INFO] [stdout] | ----------------- the item is gated behind the `dockq` feature [INFO] [stdout] 323 | pub mod dockq; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `dockq_to` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/dockq_detailed_comparison.rs:23:28 [INFO] [stdout] | [INFO] [stdout] 23 | let result = model.dockq_to(&native)?; [INFO] [stdout] | ^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `rmsd_to` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/geometry_demo.rs:38:27 [INFO] [stdout] | [INFO] [stdout] 38 | let rmsd = structure1.rmsd_to(&structure2)?; [INFO] [stdout] | ^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `rigid_residues` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/b_factor_demo.rs:110:27 [INFO] [stdout] | [INFO] [stdout] 110 | let rigid = structure.rigid_residues(threshold_low); [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] help: there is a method `get_residues` with a similar name, but with different arguments [INFO] [stdout] --> src/core/pdb.rs:231:5 [INFO] [stdout] | [INFO] [stdout] 231 | pub fn get_residues(&self) -> Vec<(i32, String)> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `rmsd_to_with_selection` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/geometry_demo.rs:46:30 [INFO] [stdout] | [INFO] [stdout] 46 | let rmsd_ca = structure1.rmsd_to_with_selection(&structure2, AtomSelection::CaOnly)?; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `dockq_to_with_options` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/dockq_detailed_comparison.rs:88:28 [INFO] [stdout] | [INFO] [stdout] 88 | let result = model.dockq_to_with_options(&native, options)?; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `normalize_b_factors` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/b_factor_demo.rs:137:32 [INFO] [stdout] | [INFO] [stdout] 137 | let normalized = structure.normalize_b_factors(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: cannot find `dockq` in `pdbrust` [INFO] [stdout] --> examples/dockq_demo.rs:97:35 [INFO] [stdout] | [INFO] [stdout] 97 | fn print_result(result: &pdbrust::dockq::DockQResult) { [INFO] [stdout] | ^^^^^ could not find `dockq` in `pdbrust` [INFO] [stdout] | [INFO] [stdout] note: found an item that was configured out [INFO] [stdout] --> src/lib.rs:323:9 [INFO] [stdout] | [INFO] [stdout] 322 | #[cfg(feature = "dockq")] [INFO] [stdout] | ----------------- the item is gated behind the `dockq` feature [INFO] [stdout] 323 | pub mod dockq; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0432]: unresolved import `pdbrust::rcsb` [INFO] [stdout] --> examples/async_download_demo.rs:13:14 [INFO] [stdout] | [INFO] [stdout] 13 | use pdbrust::rcsb::{ [INFO] [stdout] | ^^^^ could not find `rcsb` in `pdbrust` [INFO] [stdout] | [INFO] [stdout] note: found an item that was configured out [INFO] [stdout] --> src/lib.rs:311:9 [INFO] [stdout] | [INFO] [stdout] 310 | #[cfg(feature = "rcsb")] [INFO] [stdout] | ---------------- the item is gated behind the `rcsb` feature [INFO] [stdout] 311 | pub mod rcsb; [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: cannot find module or crate `tokio` in this scope [INFO] [stdout] --> examples/async_download_demo.rs:19:3 [INFO] [stdout] | [INFO] [stdout] 19 | #[tokio::main] [INFO] [stdout] | ^^^^^ use of unresolved module or unlinked crate `tokio` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `rmsd_to_with_selection` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/geometry_demo.rs:50:30 [INFO] [stdout] | [INFO] [stdout] 50 | let rmsd_bb = structure1.rmsd_to_with_selection(&structure2, AtomSelection::Backbone)?; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0432]: unresolved import `pdbrust::geometry` [INFO] [stdout] --> examples/lddt_demo.rs:10:14 [INFO] [stdout] | [INFO] [stdout] 10 | use pdbrust::geometry::{AtomSelection, LddtOptions}; [INFO] [stdout] | ^^^^^^^^ could not find `geometry` in `pdbrust` [INFO] [stdout] | [INFO] [stdout] note: found an item that was configured out [INFO] [stdout] --> src/lib.rs:314:9 [INFO] [stdout] | [INFO] [stdout] 313 | #[cfg(feature = "geometry")] [INFO] [stdout] | -------------------- the item is gated behind the `geometry` feature [INFO] [stdout] 314 | pub mod geometry; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `b_factor_percentile` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/b_factor_demo.rs:163:37 [INFO] [stdout] | [INFO] [stdout] 163 | if let Some(p1) = structure.b_factor_percentile(atom1.serial) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `dockq_to_with_options` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/dockq_detailed_comparison.rs:160:28 [INFO] [stdout] | [INFO] [stdout] 160 | let result = model.dockq_to_with_options(&native, options)?; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `b_factor_percentile` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/b_factor_demo.rs:172:37 [INFO] [stdout] | [INFO] [stdout] 172 | if let Some(p2) = structure.b_factor_percentile(atom2.serial) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `b_factor_percentile` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/b_factor_demo.rs:181:37 [INFO] [stdout] | [INFO] [stdout] 181 | if let Some(p3) = structure.b_factor_percentile(atom3.serial) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `rmsd_to_with_selection` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/geometry_demo.rs:54:31 [INFO] [stdout] | [INFO] [stdout] 54 | let rmsd_all = structure1.rmsd_to_with_selection(&structure2, AtomSelection::AllAtoms)?; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0599`. [INFO] [stdout] [INFO] [stderr] error: could not compile `pdbrust` (example "b_factor_demo") due to 12 previous errors [INFO] [stdout] error[E0599]: no method named `dockq_to_with_options` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/dockq_detailed_comparison.rs:268:28 [INFO] [stdout] | [INFO] [stdout] 268 | let result = model.dockq_to_with_options(&native, options)?; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stdout] error[E0599]: no method named `dockq_to` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/dockq_demo.rs:29:25 [INFO] [stdout] | [INFO] [stdout] 29 | let result = native.dockq_to(&native)?; [INFO] [stdout] | ^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `rmsd_to_with_selection` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/geometry_demo.rs:58:34 [INFO] [stdout] | [INFO] [stdout] 58 | let rmsd_custom = structure1.rmsd_to_with_selection( [INFO] [stdout] | -----------^^^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: cannot find `summary` in `pdbrust` [INFO] [stdout] --> examples/analysis_workflow.rs:129:31 [INFO] [stdout] | [INFO] [stdout] 129 | let csv_header = pdbrust::summary::StructureSummary::field_names().join(","); [INFO] [stdout] | ^^^^^^^ could not find `summary` in `pdbrust` [INFO] [stdout] | [INFO] [stdout] note: found an item that was configured out [INFO] [stdout] --> src/lib.rs:308:9 [INFO] [stdout] | [INFO] [stdout] 307 | #[cfg(feature = "summary")] [INFO] [stdout] | ------------------- the item is gated behind the `summary` feature [INFO] [stdout] 308 | pub mod summary; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `align_to` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/geometry_demo.rs:69:40 [INFO] [stdout] | [INFO] [stdout] 69 | let (aligned, result) = structure1.align_to(&structure2)?; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] help: there is a method `into` with a similar name, but with different arguments [INFO] [stdout] --> /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/core/src/convert/mod.rs:455:4 [INFO] [stdout] help: some of the expressions' fields have a method of the same name [INFO] [stdout] | [INFO] [stdout] 69 | let (aligned, result) = structure1.atoms.align_to(&structure2)?; [INFO] [stdout] | ++++++ [INFO] [stdout] 69 | let (aligned, result) = structure1.connects.align_to(&structure2)?; [INFO] [stdout] | +++++++++ [INFO] [stdout] 69 | let (aligned, result) = structure1.models.align_to(&structure2)?; [INFO] [stdout] | +++++++ [INFO] [stdout] 69 | let (aligned, result) = structure1.remarks.align_to(&structure2)?; [INFO] [stdout] | ++++++++ [INFO] [stdout] = and 2 other candidates [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0432, E0599. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0432`. [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `lddt_to` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/lddt_demo.rs:37:28 [INFO] [stdout] | [INFO] [stdout] 37 | let result = reference.lddt_to(&reference)?; [INFO] [stdout] | ^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `pdbrust` (example "dockq_detailed_comparison") due to 5 previous errors [INFO] [stdout] error[E0599]: no method named `align_to_with_selection` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/geometry_demo.rs:79:20 [INFO] [stdout] | [INFO] [stdout] 79 | structure1.align_to_with_selection(&structure2, AtomSelection::Backbone)?; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `lddt_to` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/lddt_demo.rs:62:29 [INFO] [stdout] | [INFO] [stdout] 62 | let result = translated.lddt_to(&reference)?; [INFO] [stdout] | ^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `rmsd_to` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/lddt_demo.rs:67:27 [INFO] [stdout] | [INFO] [stdout] 67 | let rmsd = translated.rmsd_to(&reference)?; [INFO] [stdout] | ^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `per_residue_rmsd_to` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/geometry_demo.rs:89:30 [INFO] [stdout] | [INFO] [stdout] 89 | let per_res = structure1.per_residue_rmsd_to(&structure2)?; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] help: there is a method `get_residues` with a similar name, but with different arguments [INFO] [stdout] --> src/core/pdb.rs:231:5 [INFO] [stdout] | [INFO] [stdout] 231 | pub fn get_residues(&self) -> Vec<(i32, String)> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `lddt_to` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/lddt_demo.rs:88:26 [INFO] [stdout] | [INFO] [stdout] 88 | let result = rotated.lddt_to(&reference)?; [INFO] [stdout] | ^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0752]: `main` function is not allowed to be `async` [INFO] [stdout] --> examples/async_download_demo.rs:20:1 [INFO] [stdout] | [INFO] [stdout] 20 | async fn main() -> Result<(), Box> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ `main` function is not allowed to be `async` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0432`. [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `rmsd_to` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/geometry_demo.rs:134:32 [INFO] [stdout] | [INFO] [stdout] 134 | let self_rmsd = structure1.rmsd_to(&structure1)?; [INFO] [stdout] | ^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `lddt_to` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/lddt_demo.rs:105:28 [INFO] [stdout] | [INFO] [stdout] 105 | let result = perturbed.lddt_to(&reference)?; [INFO] [stdout] | ^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `dockq_to_with_options` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/dockq_demo.rs:50:28 [INFO] [stdout] | [INFO] [stdout] 50 | let result = perturbed.dockq_to_with_options(&native, options)?; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `align_to` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/geometry_demo.rs:137:39 [INFO] [stdout] | [INFO] [stdout] 137 | let (_, self_result) = structure1.align_to(&structure1)?; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] help: there is a method `into` with a similar name, but with different arguments [INFO] [stdout] --> /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/core/src/convert/mod.rs:455:4 [INFO] [stdout] help: some of the expressions' fields have a method of the same name [INFO] [stdout] | [INFO] [stdout] 137 | let (_, self_result) = structure1.atoms.align_to(&structure1)?; [INFO] [stdout] | ++++++ [INFO] [stdout] 137 | let (_, self_result) = structure1.connects.align_to(&structure1)?; [INFO] [stdout] | +++++++++ [INFO] [stdout] 137 | let (_, self_result) = structure1.models.align_to(&structure1)?; [INFO] [stdout] | +++++++ [INFO] [stdout] 137 | let (_, self_result) = structure1.remarks.align_to(&structure1)?; [INFO] [stdout] | ++++++++ [INFO] [stdout] = and 2 other candidates [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `keep_only_chain` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/filtering_demo.rs:29:29 [INFO] [stdout] | [INFO] [stdout] 29 | let chain_a = structure.keep_only_chain("A"); [INFO] [stdout] | ^^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `keep_only_ca` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/filtering_demo.rs:36:29 [INFO] [stdout] | [INFO] [stdout] 36 | let ca_only = structure.keep_only_ca(); [INFO] [stdout] | ^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0432, E0433, E0752. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0432`. [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0432, E0599. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0432`. [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `lddt_to_with_options` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/lddt_demo.rs:128:19 [INFO] [stdout] | [INFO] [stdout] 128 | perturbed.lddt_to_with_options(&reference, AtomSelection::CaOnly, strict_options)?; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `keep_only_backbone` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/filtering_demo.rs:40:30 [INFO] [stdout] | [INFO] [stdout] 40 | let backbone = structure.keep_only_backbone(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `get_ca_coords` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/filtering_demo.rs:47:31 [INFO] [stdout] | [INFO] [stdout] 47 | let ca_coords = structure.get_ca_coords(None); [INFO] [stdout] | ^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `get_ca_coords` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/filtering_demo.rs:51:39 [INFO] [stdout] | [INFO] [stdout] 51 | let chain_a_ca_coords = structure.get_ca_coords(Some("A")); [INFO] [stdout] | ^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `pdbrust` (example "geometry_demo") due to 11 previous errors [INFO] [stdout] error[E0599]: no method named `remove_ligands` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/filtering_demo.rs:58:32 [INFO] [stdout] | [INFO] [stdout] 58 | let no_ligands = structure.remove_ligands(); [INFO] [stdout] | ^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `remove_hydrogens` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/filtering_demo.rs:66:34 [INFO] [stdout] | [INFO] [stdout] 66 | let no_hydrogens = structure.remove_hydrogens(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `dockq_to_with_options` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/dockq_demo.rs:71:28 [INFO] [stdout] | [INFO] [stdout] 71 | let result = bad_model.dockq_to_with_options(&native, options)?; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `remove_ligands` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/filtering_demo.rs:78:10 [INFO] [stdout] | [INFO] [stdout] 77 | let cleaned = structure [INFO] [stdout] | ___________________- [INFO] [stdout] 78 | | .remove_ligands() [INFO] [stdout] | | -^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] | |_________| [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `pdbrust` (example "async_download_demo") due to 3 previous errors [INFO] [stdout] error[E0599]: no method named `quality_report` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/analysis_workflow.rs:47:28 [INFO] [stdout] | [INFO] [stdout] 47 | let report = structure.quality_report(); [INFO] [stdout] | ^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `dockq_to` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/dockq_demo.rs:89:26 [INFO] [stdout] | [INFO] [stdout] 89 | let result = swapped.dockq_to(&native)?; [INFO] [stdout] | ^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `pdbrust` (example "batch_processing") due to 1 previous error [INFO] [stdout] Some errors have detailed explanations: E0432, E0433, E0599. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0432`. [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `remove_ligands` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/filtering_demo.rs:87:29 [INFO] [stdout] | [INFO] [stdout] 87 | let ca_repr = structure.remove_ligands().keep_only_ca(); [INFO] [stdout] | ^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `get_centroid` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/filtering_demo.rs:100:32 [INFO] [stdout] | [INFO] [stdout] 100 | let (cx, cy, cz) = mutable.get_centroid(); [INFO] [stdout] | ^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `lddt_to_with_options` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/lddt_demo.rs:136:19 [INFO] [stdout] | [INFO] [stdout] 136 | perturbed.lddt_to_with_options(&reference, AtomSelection::CaOnly, small_radius)?; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `center_structure` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/filtering_demo.rs:104:13 [INFO] [stdout] | [INFO] [stdout] 104 | mutable.center_structure(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `get_centroid` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/filtering_demo.rs:105:32 [INFO] [stdout] | [INFO] [stdout] 105 | let (cx, cy, cz) = mutable.get_centroid(); [INFO] [stdout] | ^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `renumber_atoms` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/filtering_demo.rs:109:13 [INFO] [stdout] | [INFO] [stdout] 109 | mutable.renumber_atoms(); [INFO] [stdout] | ^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `per_residue_lddt_to` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/lddt_demo.rs:149:29 [INFO] [stdout] | [INFO] [stdout] 149 | let per_res = perturbed.per_residue_lddt_to(&reference)?; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `normalize_chain_ids` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/filtering_demo.rs:118:17 [INFO] [stdout] | [INFO] [stdout] 118 | multi_chain.normalize_chain_ids(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] help: there is a method `get_chain_ids` with a similar name [INFO] [stdout] | [INFO] [stdout] 118 - multi_chain.normalize_chain_ids(); [INFO] [stdout] 118 + multi_chain.get_chain_ids(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `reindex_residues` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/filtering_demo.rs:123:15 [INFO] [stdout] | [INFO] [stdout] 123 | reindexed.reindex_residues(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] help: there is a method `get_residues` with a similar name [INFO] [stdout] | [INFO] [stdout] 123 - reindexed.reindex_residues(); [INFO] [stdout] 123 + reindexed.get_residues(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `pdbrust` (example "dockq_demo") due to 6 previous errors [INFO] [stderr] error: could not compile `pdbrust` (example "filtering_demo") due to 15 previous errors [INFO] [stdout] For more information about this error, try `rustc --explain E0599`. [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `lddt_to` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/lddt_demo.rs:181:41 [INFO] [stdout] | [INFO] [stdout] 181 | let lddt_result = heavily_perturbed.lddt_to(&reference)?; [INFO] [stdout] | ^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `rmsd_to` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/lddt_demo.rs:182:41 [INFO] [stdout] | [INFO] [stdout] 182 | let rmsd_direct = heavily_perturbed.rmsd_to(&reference)?; [INFO] [stdout] | ^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `align_to` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/lddt_demo.rs:183:49 [INFO] [stdout] | [INFO] [stdout] 183 | let (_, aligned_result) = heavily_perturbed.align_to(&reference)?; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] help: there is a method `into` with a similar name, but with different arguments [INFO] [stdout] --> /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/core/src/convert/mod.rs:455:4 [INFO] [stdout] help: some of the expressions' fields have a method of the same name [INFO] [stdout] | [INFO] [stdout] 183 | let (_, aligned_result) = heavily_perturbed.atoms.align_to(&reference)?; [INFO] [stdout] | ++++++ [INFO] [stdout] 183 | let (_, aligned_result) = heavily_perturbed.connects.align_to(&reference)?; [INFO] [stdout] | +++++++++ [INFO] [stdout] 183 | let (_, aligned_result) = heavily_perturbed.models.align_to(&reference)?; [INFO] [stdout] | +++++++ [INFO] [stdout] 183 | let (_, aligned_result) = heavily_perturbed.remarks.align_to(&reference)?; [INFO] [stdout] | ++++++++ [INFO] [stdout] = and 2 other candidates [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `remove_ligands` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/analysis_workflow.rs:69:29 [INFO] [stdout] | [INFO] [stdout] 69 | let cleaned = structure.remove_ligands(); [INFO] [stdout] | ^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `lddt_to_with_options` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/lddt_demo.rs:196:29 [INFO] [stdout] | [INFO] [stdout] 196 | let lddt_ca = reference.lddt_to_with_options( [INFO] [stdout] | ----------^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `lddt_to_with_options` found for struct `PdbStructure` in the current scope [INFO] [stdout] --> examples/lddt_demo.rs:201:29 [INFO] [stdout] | [INFO] [stdout] 201 | let lddt_bb = reference.lddt_to_with_options( [INFO] [stdout] | ----------^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0433, E0599. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0433`. [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0432, E0599. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0432`. [INFO] [stdout] [INFO] [stderr] error: could not compile `pdbrust` (example "analysis_workflow") due to 3 previous errors [INFO] [stderr] error: could not compile `pdbrust` (example "lddt_demo") due to 14 previous errors [INFO] running `Command { std: "docker" "inspect" "2350a42188a923a19e26616f2d8ebf48a9d38307a18e01440233e5babf8b28a9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2350a42188a923a19e26616f2d8ebf48a9d38307a18e01440233e5babf8b28a9", kill_on_drop: false }` [INFO] [stdout] 2350a42188a923a19e26616f2d8ebf48a9d38307a18e01440233e5babf8b28a9