[INFO] fetching crate mscore 0.4.1... [INFO] testing mscore-0.4.1 against try#dec9417b8611e34e787a3e4c37686b5131f9e5c5 for pr-154210-1 [INFO] extracting crate mscore 0.4.1 into /workspace/builds/worker-1-tc2/source [INFO] started tweaking crates.io crate mscore 0.4.1 [INFO] finished tweaking crates.io crate mscore 0.4.1 [INFO] tweaked toml for crates.io crate mscore 0.4.1 written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate mscore 0.4.1 on toolchain dec9417b8611e34e787a3e4c37686b5131f9e5c5 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate mscore 0.4.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 3ec879030abf46642d1b373dbd9b2eefc89b0836cbde613791155b4e7b388cde [INFO] running `Command { std: "docker" "start" "-a" "3ec879030abf46642d1b373dbd9b2eefc89b0836cbde613791155b4e7b388cde", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "3ec879030abf46642d1b373dbd9b2eefc89b0836cbde613791155b4e7b388cde", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3ec879030abf46642d1b373dbd9b2eefc89b0836cbde613791155b4e7b388cde", kill_on_drop: false }` [INFO] [stdout] 3ec879030abf46642d1b373dbd9b2eefc89b0836cbde613791155b4e7b388cde [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 43602cbee006668841b0abb37a56da7eb8c2942c4427d816e618282828530353 [INFO] running `Command { std: "docker" "start" "-a" "43602cbee006668841b0abb37a56da7eb8c2942c4427d816e618282828530353", kill_on_drop: false }` [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling libc v0.2.180 [INFO] [stderr] Compiling bytemuck v1.25.0 [INFO] [stderr] Compiling aho-corasick v1.1.4 [INFO] [stderr] Compiling virtue v0.0.18 [INFO] [stderr] Compiling unty v0.0.4 [INFO] [stderr] Compiling ppv-lite86 v0.2.21 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Compiling rayon v1.11.0 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling bincode_derive v2.0.1 [INFO] [stderr] Compiling wide v0.7.33 [INFO] [stderr] Compiling regex-automata v0.4.14 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling ordered-float v4.6.0 [INFO] [stderr] Compiling bincode v2.0.1 [INFO] [stderr] Compiling getrandom v0.2.17 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling simba v0.9.1 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling regex v1.12.3 [INFO] [stderr] Compiling nalgebra v0.33.2 [INFO] [stderr] Compiling statrs v0.18.0 [INFO] [stderr] Compiling mscore v0.4.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 30.66s [INFO] running `Command { std: "docker" "inspect" "43602cbee006668841b0abb37a56da7eb8c2942c4427d816e618282828530353", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "43602cbee006668841b0abb37a56da7eb8c2942c4427d816e618282828530353", kill_on_drop: false }` [INFO] [stdout] 43602cbee006668841b0abb37a56da7eb8c2942c4427d816e618282828530353 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 007fd55edcb2e8ec549a757fa26c86be3a9b45646eabc3d520a200ab060adcb1 [INFO] running `Command { std: "docker" "start" "-a" "007fd55edcb2e8ec549a757fa26c86be3a9b45646eabc3d520a200ab060adcb1", kill_on_drop: false }` [INFO] [stderr] Compiling mscore v0.4.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused variable: `filtered_intensity` [INFO] [stdout] --> src/timstof/spectrum_processing.rs:423:27 [INFO] [stdout] | [INFO] [stdout] 423 | let (filtered_mz, filtered_intensity) = deisotope_spectrum(&mz, &intensity, 10.0); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_filtered_intensity` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `filtered_intensity` [INFO] [stdout] --> src/timstof/spectrum_processing.rs:436:27 [INFO] [stdout] | [INFO] [stdout] 436 | let (filtered_mz, filtered_intensity) = filter_top_n(&mz, &intensity, 3); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_filtered_intensity` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 3.33s [INFO] running `Command { std: "docker" "inspect" "007fd55edcb2e8ec549a757fa26c86be3a9b45646eabc3d520a200ab060adcb1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "007fd55edcb2e8ec549a757fa26c86be3a9b45646eabc3d520a200ab060adcb1", kill_on_drop: false }` [INFO] [stdout] 007fd55edcb2e8ec549a757fa26c86be3a9b45646eabc3d520a200ab060adcb1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 867f650166273d00a13607fbcdd0625dcd6fa566d1c76709be33d933440e1899 [INFO] running `Command { std: "docker" "start" "-a" "867f650166273d00a13607fbcdd0625dcd6fa566d1c76709be33d933440e1899", kill_on_drop: false }` [INFO] [stderr] warning: unused variable: `filtered_intensity` [INFO] [stdout] [INFO] [stderr] --> src/timstof/spectrum_processing.rs:423:27 [INFO] [stdout] running 19 tests [INFO] [stderr] | [INFO] [stderr] 423 | let (filtered_mz, filtered_intensity) = deisotope_spectrum(&mz, &intensity, 10.0); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_filtered_intensity` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `filtered_intensity` [INFO] [stderr] --> src/timstof/spectrum_processing.rs:436:27 [INFO] [stderr] | [INFO] [stderr] 436 | let (filtered_mz, filtered_intensity) = filter_top_n(&mz, &intensity, 3); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_filtered_intensity` [INFO] [stderr] [INFO] [stderr] warning: `mscore` (lib test) generated 2 warnings (run `cargo fix --lib -p mscore --tests` to apply 2 suggestions) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.11s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/mscore-729c9b847e8d9796) [INFO] [stdout] test algorithm::isotope::tests::test_frame_building_intensity_scaling ... ok [INFO] [stdout] test algorithm::isotope::tests::test_max_isotope_limit ... ok [INFO] [stdout] test algorithm::isotope::tests::test_realistic_peptide_transmission ... ok [INFO] [stdout] test algorithm::isotope::tests::test_transmission_empty_inputs ... ok [INFO] [stdout] test algorithm::isotope::tests::test_transmission_all_isotopes ... ok [INFO] [stdout] test algorithm::isotope::tests::test_isotope_pattern_shift ... ok [INFO] [stdout] test algorithm::isotope::tests::test_transmission_extra_isotopes ... ok [INFO] [stdout] test algorithm::isotope::tests::test_transmission_partial_isotopes ... ok [INFO] [stdout] test algorithm::utility::tests::test_calculate_bounds_gaussian ... ok [INFO] [stdout] test algorithm::utility::tests::test_calculate_frame_abundance_gaussian ... ok [INFO] [stdout] test algorithm::utility::tests::test_calculate_frame_occurrence_gaussian ... ok [INFO] [stdout] test algorithm::isotope::tests::test_transmission_m0_only ... ok [INFO] [stdout] test algorithm::utility::tests::test_normal_cdf_range ... ok [INFO] [stdout] test timstof::spectrum_processing::tests::test_deisotope_spectrum ... ok [INFO] [stdout] test timstof::spectrum_processing::tests::test_filter_top_n ... ok [INFO] [stdout] test timstof::spectrum_processing::tests::test_flatten_frame_to_spectrum ... ok [INFO] [stdout] test timstof::spectrum_processing::tests::test_process_spectrum ... ok [INFO] [stdout] test algorithm::utility::tests::test_parallel_functions ... ok [INFO] [stdout] test timstof::spectrum_processing::tests::test_get_inverse_mobility_along_scan_marginal ... ok [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/mscore-93e082c83f1bab0f) [INFO] [stdout] [INFO] [stdout] test result: ok. 19 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.19s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests mscore [INFO] [stdout] [INFO] [stdout] running 53 tests [INFO] [stdout] test src/algorithm/peptide.rs - algorithm::peptide::calculate_peptide_product_ion_mono_isotopic_mass (line 85) ... ok [INFO] [stdout] test src/algorithm/isotope.rs - algorithm::isotope::generate_isotope_distribution (line 148) ... ok [INFO] [stdout] test src/algorithm/isotope.rs - algorithm::isotope::convolve_pow (line 96) ... ok [INFO] [stdout] test src/algorithm/isotope.rs - algorithm::isotope::normal_pdf (line 256) ... ok [INFO] [stdout] test src/algorithm/peptide.rs - algorithm::peptide::calculate_peptide_mono_isotopic_mass (line 27) ... ok [INFO] [stdout] test src/algorithm/peptide.rs - algorithm::peptide::get_num_protonizable_sites (line 376) ... ok [INFO] [stdout] test src/algorithm/peptide.rs - algorithm::peptide::calculate_product_ion_mz (line 138) ... ok [INFO] [stdout] test src/algorithm/peptide.rs - algorithm::peptide::calculate_complementary_fragment_composition (line 285) ... ok [INFO] [stdout] test src/algorithm/peptide.rs - algorithm::peptide::calculate_amino_acid_composition (line 163) ... ok [INFO] [stdout] test src/algorithm/isotope.rs - algorithm::isotope::generate_averagine_spectrum (line 450) ... ok [INFO] [stdout] test src/algorithm/isotope.rs - algorithm::isotope::convolve (line 30) ... ok [INFO] [stdout] test src/algorithm/isotope.rs - algorithm::isotope::generate_averagine_spectra (line 514) ... ok [INFO] [stdout] test src/algorithm/isotope.rs - algorithm::isotope::factorial (line 279) ... ok [INFO] [stdout] test src/algorithm/peptide.rs - algorithm::peptide::simulate_charge_state_for_sequence (line 408) ... ok [INFO] [stdout] test src/algorithm/isotope.rs - algorithm::isotope::generate_isotope_pattern (line 404) ... ok [INFO] [stdout] test src/algorithm/peptide.rs - algorithm::peptide::simulate_charge_states_for_sequences (line 446) ... ok [INFO] [stdout] test src/algorithm/isotope.rs - algorithm::isotope::lam (line 323) ... ok [INFO] [stdout] test src/chemistry/formulas.rs - chemistry::formulas::calculate_mz (line 90) ... ok [INFO] [stdout] test src/chemistry/elements.rs - chemistry::elements::atoms_isotopic_weights (line 157) ... ok [INFO] [stdout] test src/algorithm/utility.rs - algorithm::utility::calculate_scan_occurrence_gaussian (line 317) ... ok [INFO] [stdout] test src/chemistry/amino_acid.rs - chemistry::amino_acid::amino_acid_composition (line 104) ... ok [INFO] [stdout] test src/chemistry/elements.rs - chemistry::elements::atomic_weights_mono_isotopic (line 15) ... ok [INFO] [stdout] test src/chemistry/elements.rs - chemistry::elements::isotopic_abundance (line 215) ... ok [INFO] [stdout] test src/chemistry/amino_acid.rs - chemistry::amino_acid::amino_acids (line 15) ... ok [INFO] [stdout] test src/chemistry/unimod.rs - chemistry::unimod::unimod_modifications_mass_numerical (line 1108) ... ok [INFO] [stdout] test src/chemistry/unimod.rs - chemistry::unimod::modification_atomic_composition (line 15) ... ok [INFO] [stdout] test src/chemistry/unimod.rs - chemistry::unimod::unimod_modifications_mass (line 57) ... ok [INFO] [stdout] test src/chemistry/formulas.rs - chemistry::formulas::one_over_reduced_mobility_to_ccs (line 20) ... ok [INFO] [stdout] test src/chemistry/formulas.rs - chemistry::formulas::ccs_to_one_over_reduced_mobility (line 58) ... ok [INFO] [stdout] test src/chemistry/utility.rs - chemistry::utility::reshape_prosit_array (line 154) ... ok [INFO] [stdout] test src/chemistry/amino_acid.rs - chemistry::amino_acid::amino_acid_masses (line 60) ... ok [INFO] [stdout] test src/chemistry/utility.rs - chemistry::utility::unimod_sequence_to_tokens (line 17) ... ok [INFO] [stdout] test src/data/spectrum.rs - data::spectrum::IndexedMzSpectrum::to_resolution (line 556) ... ok [INFO] [stdout] test src/timstof/frame.rs - timstof::frame::ImsFrame::new (line 113) ... ok [INFO] [stdout] test src/data/spectrum.rs - data::spectrum::IndexedMzSpectrum::new (line 524) ... ok [INFO] [stdout] test src/timstof/frame.rs - timstof::frame::TimsFrame::new (line 202) ... ok [INFO] [stdout] test src/chemistry/utility.rs - chemistry::utility::find_unimod_patterns (line 83) ... ok [INFO] [stdout] test src/data/spectrum.rs - data::spectrum::MzSpectrum::new (line 132) ... ok [INFO] [stdout] test src/timstof/frame.rs - timstof::frame::TimsFrame::filter_ranged (line 282) ... ok [INFO] [stdout] test src/data/spectrum.rs - data::spectrum::MzSpectrum::add (line 420) ... ok [INFO] [stdout] test src/timstof/frame.rs - timstof::frame::TimsFrame::get_ims_frame (line 218) ... ok [INFO] [stdout] test src/data/spectrum.rs - data::spectrum::MzSpectrum::to_resolution (line 350) ... ok [INFO] [stdout] test src/timstof/frame.rs - timstof::frame::TimsFrame (line 850) ... ok [INFO] [stdout] test src/timstof/frame.rs - timstof::frame::TimsFrame::to_tims_spectra (line 232) ... ok [INFO] [stdout] test src/data/spectrum.rs - data::spectrum::MzSpectrum::to_windows (line 182) ... ok [INFO] [stdout] test src/data/spectrum.rs - data::spectrum::IndexedMzSpectrum::vectorized (line 599) ... ok [INFO] [stdout] test src/timstof/quadrupole.rs - timstof::quadrupole::smooth_step (line 24) ... ok [INFO] [stdout] test src/timstof/slice.rs - timstof::slice::TimsSlice::filter_ranged (line 58) ... ok [INFO] [stdout] test src/timstof/spectrum.rs - timstof::spectrum::TimsSpectrum::new (line 39) ... ok [INFO] [stdout] test src/timstof/slice.rs - timstof::slice::TimsSlice::new (line 31) ... ok [INFO] [stdout] test src/timstof/quadrupole.rs - timstof::quadrupole::ion_transition_function_midpoint (line 82) ... ok [INFO] [stdout] test src/timstof/quadrupole.rs - timstof::quadrupole::smooth_step_up_down (line 54) ... ok [INFO] [stdout] test src/timstof/quadrupole.rs - timstof::quadrupole::apply_transmission (line 120) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 53 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 6.63s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "867f650166273d00a13607fbcdd0625dcd6fa566d1c76709be33d933440e1899", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "867f650166273d00a13607fbcdd0625dcd6fa566d1c76709be33d933440e1899", kill_on_drop: false }` [INFO] [stdout] 867f650166273d00a13607fbcdd0625dcd6fa566d1c76709be33d933440e1899