[INFO] fetching crate methyltracer-cli 0.1.0... [INFO] testing methyltracer-cli-0.1.0 against try#dec9417b8611e34e787a3e4c37686b5131f9e5c5 for pr-154210-1 [INFO] extracting crate methyltracer-cli 0.1.0 into /workspace/builds/worker-2-tc2/source [INFO] started tweaking crates.io crate methyltracer-cli 0.1.0 [INFO] finished tweaking crates.io crate methyltracer-cli 0.1.0 [INFO] tweaked toml for crates.io crate methyltracer-cli 0.1.0 written to /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate methyltracer-cli 0.1.0 on toolchain dec9417b8611e34e787a3e4c37686b5131f9e5c5 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate methyltracer-cli 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 0344459a879c2ebf769f084353b04269c9d3ec8d6c89dc08fccdc66b5cb95ae8 [INFO] running `Command { std: "docker" "start" "-a" "0344459a879c2ebf769f084353b04269c9d3ec8d6c89dc08fccdc66b5cb95ae8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "0344459a879c2ebf769f084353b04269c9d3ec8d6c89dc08fccdc66b5cb95ae8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0344459a879c2ebf769f084353b04269c9d3ec8d6c89dc08fccdc66b5cb95ae8", kill_on_drop: false }` [INFO] [stdout] 0344459a879c2ebf769f084353b04269c9d3ec8d6c89dc08fccdc66b5cb95ae8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] fc9511729f77070bc5fc8a02726044d7b8f4e8303ad79281f6b11fa712849a85 [INFO] running `Command { std: "docker" "start" "-a" "fc9511729f77070bc5fc8a02726044d7b8f4e8303ad79281f6b11fa712849a85", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.105 [INFO] [stderr] Compiling quote v1.0.43 [INFO] [stderr] Compiling find-msvc-tools v0.1.7 [INFO] [stderr] Compiling pkg-config v0.3.32 [INFO] [stderr] Compiling vcpkg v0.2.15 [INFO] [stderr] Compiling memchr v2.7.6 [INFO] [stderr] Compiling regex-syntax v0.8.8 [INFO] [stderr] Compiling smallvec v1.15.1 [INFO] [stderr] Compiling libloading v0.7.4 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling futures-sink v0.3.31 [INFO] [stderr] Compiling utf8parse v0.2.2 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling parking_lot_core v0.8.6 [INFO] [stderr] Compiling anstyle v1.0.13 [INFO] [stderr] Compiling futures-channel v0.3.31 [INFO] [stderr] Compiling anstyle-parse v0.2.7 [INFO] [stderr] Compiling rustls v0.21.12 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.2 [INFO] [stderr] Compiling cc v1.2.52 [INFO] [stderr] Compiling colorchoice v1.0.4 [INFO] [stderr] Compiling rustix v1.1.3 [INFO] [stderr] Compiling base64 v0.21.7 [INFO] [stderr] Compiling anstyle-query v1.1.5 [INFO] [stderr] Compiling getrandom v0.3.4 [INFO] [stderr] Compiling num_cpus v1.17.0 [INFO] [stderr] Compiling instant v0.1.13 [INFO] [stderr] Compiling clap_lex v0.7.6 [INFO] [stderr] Compiling strsim v0.11.1 [INFO] [stderr] Compiling bytes v1.11.0 [INFO] [stderr] Compiling anstream v0.6.21 [INFO] [stderr] Compiling rustls-pemfile v1.0.4 [INFO] [stderr] Compiling hdf5-types v0.8.1 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling linux-raw-sys v0.11.0 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling anyhow v1.0.100 [INFO] [stderr] Compiling openssl-probe v0.1.6 [INFO] [stderr] Compiling crc32fast v1.5.0 [INFO] [stderr] Compiling rustls-native-certs v0.6.3 [INFO] [stderr] Compiling regex-automata v0.4.13 [INFO] [stderr] Compiling clap_builder v4.5.54 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling simd-adler32 v0.3.8 [INFO] [stderr] Compiling aho-corasick v1.1.4 [INFO] [stderr] Compiling syn v2.0.114 [INFO] [stderr] Compiling cmake v0.1.57 [INFO] [stderr] Compiling http v0.2.12 [INFO] [stderr] Compiling adler2 v2.0.1 [INFO] [stderr] Compiling ascii v1.1.0 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling once_cell v1.21.3 [INFO] [stderr] Compiling ufmt-write v0.1.0 [INFO] [stderr] Compiling fastrand v2.3.0 [INFO] [stderr] Compiling hdf5 v0.8.1 [INFO] [stderr] Compiling byteordered v0.6.0 [INFO] [stderr] Compiling ndarray v0.15.6 [INFO] [stderr] Compiling libz-sys v1.1.23 [INFO] [stderr] Compiling ring v0.17.14 [INFO] [stderr] Compiling libdeflate-sys v0.13.0 [INFO] [stderr] Compiling hdf5-src v0.8.1 [INFO] [stderr] Compiling miniz_oxide v0.8.9 [INFO] [stderr] Compiling parking_lot v0.11.2 [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] Compiling tokio v1.49.0 [INFO] [stderr] Compiling is-terminal v0.4.17 [INFO] [stderr] Compiling tempfile v3.24.0 [INFO] [stderr] Compiling csv-core v0.1.13 [INFO] [stderr] Compiling hashbrown v0.16.1 [INFO] [stderr] Compiling index_list v0.2.17 [INFO] [stderr] Compiling regex v1.12.2 [INFO] [stderr] Compiling flate2 v1.1.5 [INFO] [stderr] Compiling indexmap v2.13.0 [INFO] [stderr] Compiling csv v1.4.0 [INFO] [stderr] Compiling env_logger v0.10.2 [INFO] [stderr] Compiling rayon v1.11.0 [INFO] [stderr] Compiling rust-lapper v1.2.0 [INFO] [stderr] Compiling libdeflater v0.13.0 [INFO] [stderr] Compiling synstructure v0.13.2 [INFO] [stderr] Compiling ufmt-macros v0.3.0 [INFO] [stderr] Compiling hdf5-derive v0.8.1 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] Compiling yoke-derive v0.8.1 [INFO] [stderr] Compiling zerovec-derive v0.11.2 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling futures-macro v0.3.31 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling clap_derive v4.5.49 [INFO] [stderr] Compiling hdf5-sys v0.8.1 [INFO] [stderr] Compiling ufmt v0.2.0 [INFO] [stderr] Compiling rustls-webpki v0.101.7 [INFO] [stderr] Compiling sct v0.7.1 [INFO] [stderr] Compiling webpki v0.22.4 [INFO] [stderr] Compiling futures-util v0.3.31 [INFO] [stderr] Compiling zerofrom v0.1.6 [INFO] [stderr] Compiling yoke v0.8.1 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling zerovec v0.11.5 [INFO] [stderr] Compiling zerotrie v0.2.3 [INFO] [stderr] Compiling clap v4.5.54 [INFO] [stderr] Compiling tinystr v0.8.2 [INFO] [stderr] Compiling potential_utf v0.1.4 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling icu_collections v2.1.1 [INFO] [stderr] Compiling icu_locale_core v2.1.1 [INFO] [stderr] Compiling bincode v1.3.3 [INFO] [stderr] Compiling icu_provider v2.1.1 [INFO] [stderr] Compiling icu_properties v2.1.2 [INFO] [stderr] Compiling icu_normalizer v2.1.1 [INFO] [stderr] Compiling futures-executor v0.3.31 [INFO] [stderr] Compiling futures v0.3.31 [INFO] [stderr] Compiling idna_adapter v1.2.1 [INFO] [stderr] Compiling idna v1.1.0 [INFO] [stderr] Compiling url v2.5.8 [INFO] [stderr] Compiling attohttpc v0.25.0 [INFO] [stderr] Compiling bigtools v0.5.6 [INFO] [stderr] Compiling methyltracer-cli v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 30s [INFO] running `Command { std: "docker" "inspect" "fc9511729f77070bc5fc8a02726044d7b8f4e8303ad79281f6b11fa712849a85", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fc9511729f77070bc5fc8a02726044d7b8f4e8303ad79281f6b11fa712849a85", kill_on_drop: false }` [INFO] [stdout] fc9511729f77070bc5fc8a02726044d7b8f4e8303ad79281f6b11fa712849a85 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5f71cbd9aaf40ee3ae683ec060598ee34e28650484c7f6bd1a3d033c810d63d8 [INFO] running `Command { std: "docker" "start" "-a" "5f71cbd9aaf40ee3ae683ec060598ee34e28650484c7f6bd1a3d033c810d63d8", kill_on_drop: false }` [INFO] [stderr] Compiling methyltracer-cli v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 2.37s [INFO] running `Command { std: "docker" "inspect" "5f71cbd9aaf40ee3ae683ec060598ee34e28650484c7f6bd1a3d033c810d63d8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5f71cbd9aaf40ee3ae683ec060598ee34e28650484c7f6bd1a3d033c810d63d8", kill_on_drop: false }` [INFO] [stdout] 5f71cbd9aaf40ee3ae683ec060598ee34e28650484c7f6bd1a3d033c810d63d8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 7db3be340c8e102f54d9ed7ea06ad1c4044bc26f951c378814c42c87c50fd5df [INFO] running `Command { std: "docker" "start" "-a" "7db3be340c8e102f54d9ed7ea06ad1c4044bc26f951c378814c42c87c50fd5df", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.24s [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/methyltracer_cli-2bba09215f2a23be) [INFO] [stdout] [INFO] [stdout] running 54 tests [INFO] [stdout] test aggregate::tests::test_tile_result_finalize ... ok [INFO] [stdout] test aggregate::tests::test_tile_result_add_site ... ok [INFO] [stdout] test aggregate::tests::test_tile_result_new ... ok [INFO] [stdout] test common::tests::test_context_filter_cg_match ... ok [INFO] [stdout] test common::tests::test_context_filter_ch_match ... ok [INFO] [stdout] test common::tests::test_parse_coverage_type ... ok [INFO] [stdout] test convert::bioinformatics_format_tests::test_allc_format_parsing ... ok [INFO] [stdout] test convert::bioinformatics_format_tests::test_allc_line_processing ... ok [INFO] [stdout] test convert::bioinformatics_format_tests::test_bismark_cov_format_parsing ... ok [INFO] [stdout] test convert::bioinformatics_format_tests::test_dss_format_parsing ... ok [INFO] [stdout] test convert::bioinformatics_format_tests::test_dss_line_processing ... ok [INFO] [stdout] test convert::bioinformatics_format_tests::test_invalid_format_empty_component ... ok [INFO] [stdout] test convert::bioinformatics_format_tests::test_bismark_cov_line_processing ... ok [INFO] [stdout] test convert::bioinformatics_format_tests::test_invalid_format_missing_type_suffix ... ok [INFO] [stdout] test convert::bioinformatics_format_tests::test_invalid_format_negative_column ... ok [INFO] [stdout] test convert::bioinformatics_format_tests::test_invalid_format_non_numeric_column ... ok [INFO] [stdout] test convert::bioinformatics_format_tests::test_invalid_format_only_suffix_no_number ... ok [INFO] [stdout] test aggregate::tests::test_tile_result_finalize_zero_coverage ... ok [INFO] [stdout] test convert::bioinformatics_format_tests::test_invalid_format_too_few_parts ... ok [INFO] [stdout] test convert::bioinformatics_format_tests::test_invalid_format_wrong_header_flag ... ok [INFO] [stdout] test convert::bioinformatics_format_tests::test_invalid_format_unsupported_separator ... ok [INFO] [stdout] test convert::bioinformatics_format_tests::test_invalid_format_too_many_parts ... ok [INFO] [stdout] test convert::bioinformatics_format_tests::test_invalid_format_wrong_type_suffix ... ok [INFO] [stdout] test convert::process_tests::test_context_filter_cg_match ... ok [INFO] [stdout] test convert::bioinformatics_format_tests::test_invalid_format_zero_column_index ... ok [INFO] [stdout] test convert::process_tests::test_context_filter_ch_no_match ... ok [INFO] [stdout] test convert::process_tests::test_context_filter_ch_match ... ok [INFO] [stdout] test convert::process_tests::test_parse_f64_fast ... ok [INFO] [stdout] test convert::process_tests::test_process_line_fast_comma_separator ... ok [INFO] [stdout] test convert::process_tests::test_process_line_fast_insufficient_fields ... ok [INFO] [stdout] test convert::bioinformatics_format_tests::test_methylkit_format_parsing ... ok [INFO] [stdout] test convert::process_tests::test_process_line_fast_coverage ... ok [INFO] [stdout] test convert::bioinformatics_format_tests::test_methylkit_line_processing ... ok [INFO] [stdout] test convert::process_tests::test_process_line_fast_unmethylated ... ok [INFO] [stdout] test convert::process_tests::test_context_filter_case_insensitive ... ok [INFO] [stdout] test convert::process_tests::test_trim_bytes ... ok [INFO] [stdout] test convert::process_tests::test_value_clamping ... ok [INFO] [stdout] test convert::process_tests::test_write_f64_fixed ... ok [INFO] [stdout] test convert::process_tests::test_write_u64_fast ... ok [INFO] [stdout] test convert::process_tests::test_process_line_fast_reordered_columns ... ok [INFO] [stdout] test convert::process_tests::test_process_line_fast_zero_coverage ... ok [INFO] [stdout] test pseudobulk::tests::test_sanitize_filename ... ok [INFO] [stdout] test pseudobulk::tests::test_site_aggregation ... ok [INFO] [stdout] test pseudobulk::tests::test_trim_bytes ... ok [INFO] [stdout] test sparse::tests::test_binarization_logic ... ok [INFO] [stdout] test convert::process_tests::test_process_line_fast_with_offset ... ok [INFO] [stdout] test convert::process_tests::test_context_filter_cg_no_match ... ok [INFO] [stdout] test pseudobulk::tests::test_parse_u64_fast ... ok [INFO] [stdout] test convert::bioinformatics_format_tests::test_methyldackel_line_processing ... ok [INFO] [stdout] test convert::process_tests::test_parse_u64_fast ... ok [INFO] [stdout] test convert::process_tests::test_parse_u64_fast_errors ... ok [INFO] [stdout] test convert::process_tests::test_parse_f64_fast_errors ... ok [INFO] [stdout] test common::tests::test_parse_basic_format_unmethylated ... ok [INFO] [stdout] test convert::bioinformatics_format_tests::test_methyldackel_format_parsing ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 54 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "7db3be340c8e102f54d9ed7ea06ad1c4044bc26f951c378814c42c87c50fd5df", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7db3be340c8e102f54d9ed7ea06ad1c4044bc26f951c378814c42c87c50fd5df", kill_on_drop: false }` [INFO] [stdout] 7db3be340c8e102f54d9ed7ea06ad1c4044bc26f951c378814c42c87c50fd5df