[INFO] fetching crate kmerust 0.3.2...
[INFO] testing kmerust-0.3.2 against try#dec9417b8611e34e787a3e4c37686b5131f9e5c5 for pr-154210-1
[INFO] extracting crate kmerust 0.3.2 into /workspace/builds/worker-6-tc2/source
[INFO] started tweaking crates.io crate kmerust 0.3.2
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate kmerust 0.3.2
[INFO] tweaked toml for crates.io crate kmerust 0.3.2 written to /workspace/builds/worker-6-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate kmerust 0.3.2 on toolchain dec9417b8611e34e787a3e4c37686b5131f9e5c5
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate kmerust 0.3.2 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 0f08b8e5908d6b8b71110dc0cac5aba2d2992bc7e008160ee467fd0d143f3611
[INFO] running `Command { std: "docker" "start" "-a" "0f08b8e5908d6b8b71110dc0cac5aba2d2992bc7e008160ee467fd0d143f3611", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "0f08b8e5908d6b8b71110dc0cac5aba2d2992bc7e008160ee467fd0d143f3611", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0f08b8e5908d6b8b71110dc0cac5aba2d2992bc7e008160ee467fd0d143f3611", kill_on_drop: false }`
[INFO] [stdout] 0f08b8e5908d6b8b71110dc0cac5aba2d2992bc7e008160ee467fd0d143f3611
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f826b526d6b169bec8e8a9813cfd92dab11b5047aa84b67e53bfafc31780660e
[INFO] running `Command { std: "docker" "start" "-a" "f826b526d6b169bec8e8a9813cfd92dab11b5047aa84b67e53bfafc31780660e", kill_on_drop: false }`
[INFO] [stderr]    Compiling libm v0.2.16
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling zerocopy v0.8.39
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[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling parking_lot_core v0.9.12
[INFO] [stderr]    Compiling clap_derive v4.5.55
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[INFO] [stderr]    Compiling clap_builder v4.5.59
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling petgraph v0.8.3
[INFO] [stderr]    Compiling csv v1.4.0
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling itertools v0.14.0
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v5.1.0
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling hashbrown v0.14.5
[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling bytecount v0.6.9
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling multimap v0.10.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling dashmap v5.5.3
[INFO] [stderr]    Compiling clap v4.5.59
[INFO] [stderr]    Compiling rayon v1.11.0
[INFO] [stderr]    Compiling serde_json v1.0.149
[INFO] [stderr]    Compiling colored v3.1.1
[INFO] [stderr]    Compiling rustc-hash v2.1.1
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v3.0.0
[INFO] [stderr]    Compiling kmerust v0.3.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 30s
[INFO] running `Command { std: "docker" "inspect" "f826b526d6b169bec8e8a9813cfd92dab11b5047aa84b67e53bfafc31780660e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f826b526d6b169bec8e8a9813cfd92dab11b5047aa84b67e53bfafc31780660e", kill_on_drop: false }`
[INFO] [stdout] f826b526d6b169bec8e8a9813cfd92dab11b5047aa84b67e53bfafc31780660e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 8da9ccb7cd0e59c0e64ca521d8dc470129e76689faae5b42dd8869028769f226
[INFO] running `Command { std: "docker" "start" "-a" "8da9ccb7cd0e59c0e64ca521d8dc470129e76689faae5b42dd8869028769f226", kill_on_drop: false }`
[INFO] [stderr]    Compiling zerocopy v0.8.39
[INFO] [stderr]    Compiling zerocopy-derive v0.8.39
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling getrandom v0.3.4
[INFO] [stderr]    Compiling serde_json v1.0.149
[INFO] [stderr]    Compiling csv v1.4.0
[INFO] [stderr]    Compiling ciborium-io v0.2.2
[INFO] [stderr]    Compiling plotters-backend v0.3.7
[INFO] [stderr]    Compiling rand_core v0.9.5
[INFO] [stderr]    Compiling plotters-svg v0.3.7
[INFO] [stderr]    Compiling tracing v0.1.44
[INFO] [stderr]    Compiling wait-timeout v0.2.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling multimap v0.10.1
[INFO] [stderr]    Compiling cast v0.3.0
[INFO] [stderr]    Compiling rusty-fork v0.3.1
[INFO] [stderr]    Compiling plotters v0.3.7
[INFO] [stderr]    Compiling rand v0.9.2
[INFO] [stderr]    Compiling criterion-plot v0.5.0
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling rand_xorshift v0.4.0
[INFO] [stderr]    Compiling console v0.15.11
[INFO] [stderr]    Compiling is-terminal v0.4.17
[INFO] [stderr]    Compiling tracing-test-macro v0.2.6
[INFO] [stderr]    Compiling similar v2.7.0
[INFO] [stderr]    Compiling oorandom v11.1.5
[INFO] [stderr]    Compiling anes v0.1.6
[INFO] [stderr]    Compiling insta v1.46.3
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]    Compiling matchers v0.2.0
[INFO] [stderr]    Compiling tracing-subscriber v0.3.22
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling tracing-test v0.2.6
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling half v2.7.1
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand_chacha v0.9.0
[INFO] [stderr]    Compiling ciborium-ll v0.2.2
[INFO] [stderr]    Compiling ciborium v0.2.2
[INFO] [stderr]    Compiling proptest v1.10.0
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling criterion v0.5.1
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v3.0.0
[INFO] [stderr]    Compiling kmerust v0.3.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1m 14s
[INFO] running `Command { std: "docker" "inspect" "8da9ccb7cd0e59c0e64ca521d8dc470129e76689faae5b42dd8869028769f226", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8da9ccb7cd0e59c0e64ca521d8dc470129e76689faae5b42dd8869028769f226", kill_on_drop: false }`
[INFO] [stdout] 8da9ccb7cd0e59c0e64ca521d8dc470129e76689faae5b42dd8869028769f226
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 60ca8951f2b64b10c631391e9b9cbbd631516cfb95ea1525c3cd2fd5d8b30a74
[INFO] running `Command { std: "docker" "start" "-a" "60ca8951f2b64b10c631391e9b9cbbd631516cfb95ea1525c3cd2fd5d8b30a74", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.39s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/kmerust-d3e4f7a283157883)
[INFO] [stdout] 
[INFO] [stdout] running 86 tests
[INFO] [stdout] test builder::tests::builder_chained ... ok
[INFO] [stdout] test builder::tests::builder_default ... ok
[INFO] [stdout] test builder::tests::builder_count_without_k_fails ... ok
[INFO] [stdout] test builder::tests::builder_k_invalid ... ok
[INFO] [stdout] test builder::tests::builder_write_tsv_format ... ok
[INFO] [stdout] test builder::tests::builder_k_valid ... ok
[INFO] [stdout] test builder::tests::builder_min_count ... ok
[INFO] [stdout] test error::tests::invalid_base_error_display ... ok
[INFO] [stdout] test error::tests::kmerust_error_from_invalid_base_error ... ok
[INFO] [stdout] test format::tests::display ... ok
[INFO] [stdout] test builder::tests::builder_format ... ok
[INFO] [stdout] test error::tests::kmer_length_error_display ... ok
[INFO] [stdout] test format::tests::from_extension_gzipped ... ok
[INFO] [stdout] test format::tests::from_extension_fasta ... ok
[INFO] [stdout] test format::tests::resolve_auto_with_path ... ok
[INFO] [stdout] test format::tests::resolve_auto_without_path ... ok
[INFO] [stdout] test format::tests::from_extension_fastq ... ok
[INFO] [stdout] test format::tests::resolve_explicit_format_unchanged ... ok
[INFO] [stdout] test format::tests::from_extension_unknown_defaults_to_fasta ... ok
[INFO] [stdout] test histogram::tests::histogram_basic ... ok
[INFO] [stdout] test histogram::tests::histogram_empty ... ok
[INFO] [stdout] test histogram::tests::histogram_packed ... ok
[INFO] [stdout] test histogram::tests::histogram_sorted_keys ... ok
[INFO] [stdout] test histogram::tests::histogram_stats_single_kmer ... ok
[INFO] [stdout] test histogram::tests::histogram_stats_basic ... ok
[INFO] [stdout] test histogram::tests::histogram_stats_empty ... ok
[INFO] [stdout] test histogram::tests::histogram_single_kmer ... ok
[INFO] [stdout] test index::tests::corrupted_checksum_rejected ... ok
[INFO] [stdout] test index::tests::roundtrip_with_data ... ok
[INFO] [stdout] test index::tests::roundtrip_empty_index ... ok
[INFO] [stdout] test index::tests::roundtrip_various_k_lengths ... ok
[INFO] [stdout] test builder::tests::builder_k_validated ... ok
[INFO] [stdout] test error::tests::kmerust_error_from_kmer_length_error ... ok
[INFO] [stdout] test index::tests::crc32_known_values ... ok
[INFO] [stdout] test index::tests::file_too_small_rejected ... ok
[INFO] [stdout] test index::tests::invalid_magic_rejected ... ok
[INFO] [stdout] test input::tests::default_is_stdin ... ok
[INFO] [stdout] test index::tests::to_string_counts ... ok
[INFO] [stdout] test input::tests::from_option_none ... ok
[INFO] [stdout] test input::tests::from_option_some_file ... ok
[INFO] [stdout] test input::tests::from_path_stdin ... ok
[INFO] [stdout] test input::tests::display_stdin ... ok
[INFO] [stdout] test kmer::test::canonical_selects_lexicographically_smaller ... ok
[INFO] [stdout] test input::tests::from_option_some_stdin ... ok
[INFO] [stdout] test input::tests::from_path_file ... ok
[INFO] [stdout] test kmer::test::canonical_bits_palindrome_returns_forward ... ok
[INFO] [stdout] test kmer::test::canonical_bits_returns_smaller ... ok
[INFO] [stdout] test kmer::test::empty_kmer ... ok
[INFO] [stdout] test kmer::test::kmer_length_as_u8 ... ok
[INFO] [stdout] test kmer::test::from_sub_finds_invalid_byte_position ... ok
[INFO] [stdout] test kmer::test::from_substring_returns_err_for_invalid_substring ... ok
[INFO] [stdout] test kmer::test::kmer_byte_reverse_complement ... ok
[INFO] [stdout] test kmer::test::kmer_byte_to_u64_roundtrip ... ok
[INFO] [stdout] test input::tests::display_file ... ok
[INFO] [stdout] test kmer::test::kmer_length_into_usize ... ok
[INFO] [stdout] test kmer::test::kmer_length_rejects_too_large ... ok
[INFO] [stdout] test kmer::test::pack_unpack_roundtrip ... ok
[INFO] [stdout] test kmer::test::kmer_length_try_from ... ok
[INFO] [stdout] test kmer::test::kmer_length_rejects_zero ... ok
[INFO] [stdout] test kmer::test::reverse_complement_bits_max_k ... ok
[INFO] [stdout] test kmer::test::kmer_length_valid_range ... ok
[INFO] [stdout] test kmer::test::pack_canonical_matches_type_state_pipeline ... ok
[INFO] [stdout] test kmer::test::pack_unpack_roundtrip_various_lengths ... ok
[INFO] [stdout] test kmer::test::single_base_kmers ... ok
[INFO] [stdout] test kmer::test::type_state_flow ... ok
[INFO] [stdout] test kmer::test::reverse_complement_bits_palindrome ... ok
[INFO] [stdout] test kmer::test::reverse_complement_bits_single_base ... ok
[INFO] [stdout] test kmer::test::bytes_from_valid_substring ... ok
[INFO] [stdout] test kmer::test::unpack_to_string_works ... ok
[INFO] [stdout] test kmer::test::soft_masked_mixed_case ... ok
[INFO] [stdout] test kmer::test::soft_masked_all_lowercase ... ok
[INFO] [stdout] test kmer::test::soft_masked_bases_converted_to_uppercase ... ok
[INFO] [stdout] test kmer::test::validate_and_pack_rejects_invalid ... ok
[INFO] [stdout] test progress::tests::tracker_records_sequence ... ok
[INFO] [stdout] test progress::tests::tracker_reset ... ok
[INFO] [stdout] test progress::tests::tracker_starts_at_zero ... ok
[INFO] [stdout] test streaming::tests::count_from_sequences_basic ... ok
[INFO] [stdout] test streaming::tests::quality_filtering_with_no_threshold_counts_all ... ok
[INFO] [stdout] test streaming::tests::count_from_sequences_empty ... ok
[INFO] [stdout] test streaming::tests::count_from_sequences_multiple ... ok
[INFO] [stdout] test streaming::tests::quality_filtering_with_zero_threshold_counts_all ... ok
[INFO] [stdout] test streaming::tests::count_from_sequences_short_sequence ... ok
[INFO] [stdout] test streaming::tests::quality_filtering_skips_low_quality_kmers ... ok
[INFO] [stdout] test streaming::tests::quality_filtering_without_quality_data_counts_all ... ok
[INFO] [stdout] test kmer::test::pack_canonical_panics_on_empty_slice - should panic ... ok
[INFO] [stdout] test kmer::test::validate_and_pack_panics_on_empty_slice - should panic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 86 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.27s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/kmerust-351ae5975d207905)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/gzip_tests.rs (/opt/rustwide/target/debug/deps/gzip_tests-5cacc5a629e7032e)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/integration_tests.rs (/opt/rustwide/target/debug/deps/integration_tests-a30d06b9651d5c6a)
[INFO] [stdout] 
[INFO] [stdout] running 44 tests
[INFO] [stdout] test cli_gzip_fastq_counting ... ignored
[INFO] [stdout] test cli_fastq_format_auto_detection ... ok
[INFO] [stdout] test cli_fastq_explicit_format ... ok
[INFO] [stdout] test cli_format_tsv ... ok
[INFO] [stdout] test cli_handles_n_bases ... ok
[INFO] [stdout] test cli_format_json ... ok
[INFO] [stdout] test cli_help_flag ... ok
[INFO] [stdout] test cli_histogram_stdin ... ok
[INFO] [stdout] test cli_handles_soft_masked_bases ... ok
[INFO] [stdout] test cli_histogram_sorted_by_count ... ok
[INFO] [stdout] test cli_input_format_flag_short ... ok
[INFO] [stdout] test cli_histogram_tsv_format ... ok
[INFO] [stdout] test cli_histogram_with_min_count ... ok
[INFO] [stdout] test cli_k_too_large ... ok
[INFO] [stdout] test cli_invalid_file_path ... ok
[INFO] [stdout] test cli_fastq_handles_n_bases ... ok
[INFO] [stdout] test cli_format_histogram ... ok
[INFO] [stdout] test cli_histogram_sums_correctly ... ok
[INFO] [stdout] test cli_invalid_k ... ok
[INFO] [stdout] test cli_k_zero ... ok
[INFO] [stdout] test cli_kmer_length_32 ... ok
[INFO] [stdout] test cli_missing_args ... ok
[INFO] [stdout] test cli_query_help ... ok
[INFO] [stdout] test cli_query_invalid_index ... ok
[INFO] [stdout] test cli_query_basic ... ok
[INFO] [stdout] test cli_kmer_length_1 ... ok
[INFO] [stdout] test cli_min_count_filter ... ok
[INFO] [stdout] test cli_fastq_matches_fasta_counts ... ok
[INFO] [stdout] test cli_query_canonical_equivalence ... ok
[INFO] [stdout] test cli_save_flag_outputs_counts_and_saves ... ok
[INFO] [stdout] test cli_stdin_default_when_path_omitted ... ok
[INFO] [stdout] test cli_simple_kmer_counting ... ok
[INFO] [stdout] test cli_save_flag_creates_index ... ok
[INFO] [stdout] test cli_stdin_fastq_explicit_format ... ok
[INFO] [stdout] test cli_stdin_multiple_sequences ... ok
[INFO] [stdout] test cli_stdin_json_output ... ok
[INFO] [stdout] test cli_quiet_flag ... ok
[INFO] [stdout] test cli_simple_fastq_counting ... ok
[INFO] [stdout] test cli_stdin_pipe_simulation ... ok
[INFO] [stdout] test cli_version_flag ... ok
[INFO] [stdout] test cli_stdin_with_fasta_content ... ok
[INFO] [stdout] test cli_query_case_insensitive ... ok
[INFO] [stdout] test cli_query_nonexistent_kmer ... ok
[INFO] [stdout] test cli_query_wrong_length ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 43 passed; 0 failed; 1 ignored; 0 measured; 0 filtered out; finished in 0.08s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/jellyfish_compat.rs (/opt/rustwide/target/debug/deps/jellyfish_compat-8f0b497ca9c036e6)
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test matches_jellyfish_homopolymer ... ignored
[INFO] [stdout] test matches_jellyfish_k_boundaries ... ignored
[INFO] [stdout] test matches_jellyfish_simple ... ignored
[INFO] [stdout] test matches_jellyfish_simple_fixture ... ignored
[INFO] [stdout] test matches_jellyfish_soft_masked ... ignored
[INFO] [stdout] test matches_jellyfish_with_n_bases ... ignored
[INFO] [stdout] test matches_jellyfish_with_n_fixture ... ignored
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 7 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/library_tests.rs (/opt/rustwide/target/debug/deps/library_tests-c453d6f5afb03289)
[INFO] [stdout] 
[INFO] [stdout] running 29 tests
[INFO] [stdout] test count_kmers_from_reader_basic ... ok
[INFO] [stdout] test count_kmers_from_reader_empty_sequence ... ok
[INFO] [stdout] test count_kmers_from_reader_handles_n_bases ... ok
[INFO] [stdout] test count_kmers_from_reader_multiple_sequences ... ok
[INFO] [stdout] test count_kmers_from_reader_rejects_invalid_k ... ok
[INFO] [stdout] test count_kmers_from_reader_soft_masked ... ok
[INFO] [stdout] test count_kmers_exact_length_sequence ... ok
[INFO] [stdout] test count_kmers_empty_result_for_short_sequence ... ok
[INFO] [stdout] test count_kmers_empty_file ... ok
[INFO] [stdout] test count_kmers_basic ... ok
[INFO] [stdout] test count_kmers_all_same_base ... ok
[INFO] [stdout] test count_kmers_from_reader_matches_file_based ... ok
[INFO] [stdout] test count_kmers_complementary_sequences ... ok
[INFO] [stdout] test count_kmers_header_only ... ok
[INFO] [stdout] test count_kmers_handles_n_bases ... ok
[INFO] [stdout] test count_kmers_nonexistent_file ... ok
[INFO] [stdout] test count_kmers_palindrome ... ok
[INFO] [stdout] test count_kmers_multiple_sequences ... ok
[INFO] [stdout] test count_kmers_k_equals_1 ... ok
[INFO] [stdout] test count_kmers_k_equals_32 ... ok
[INFO] [stdout] test count_kmers_mixed_case ... ok
[INFO] [stdout] test count_kmers_rejects_k_too_large ... ok
[INFO] [stdout] test count_kmers_rejects_k_zero ... ok
[INFO] [stdout] test count_kmers_returns_canonical_forms ... ok
[INFO] [stdout] test count_kmers_soft_masked_fixture ... ok
[INFO] [stdout] test count_kmers_simple_fixture ... ok
[INFO] [stdout] test count_kmers_multiline_sequence ... ok
[INFO] [stdout] test count_kmers_soft_masked_bases ... ok
[INFO] [stdout] test count_kmers_with_n_fixture ... ok
[INFO] [stdout] 
[INFO] [stderr]      Running tests/mmap_tests.rs (/opt/rustwide/target/debug/deps/mmap_tests-2521fcac6d497799)
[INFO] [stdout] test result: ok. 29 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]      Running tests/progress_tests.rs (/opt/rustwide/target/debug/deps/progress_tests-e8bf2e0d8eec1d78)
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test progress_tracker_records_sequences ... ok
[INFO] [stdout] test progress_tracker_reset ... ok
[INFO] [stdout] test count_kmers_with_progress_tracks_sequences ... ok
[INFO] [stdout] test count_kmers_with_progress_produces_same_results_as_regular ... ok
[INFO] [stdout] test count_kmers_with_progress_invokes_callback ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/property_tests.rs (/opt/rustwide/target/debug/deps/property_tests-f1cf907c6cc7bffb)
[INFO] [stdout] 
[INFO] [stdout] running 18 tests
[INFO] [stdout] test kmer_length_accepts_valid_range ... ok
[INFO] [stdout] test kmer_length_rejects_too_large ... ok
[INFO] [stdout] test kmer_length_rejects_zero ... ok
[INFO] [stdout] test canonical_is_idempotent ... ok
[INFO] [stdout] test fast_path_matches_type_state_pipeline ... ok
[INFO] [stdout] test different_sequences_different_packing ... ok
[INFO] [stdout] test kmer_and_rc_have_same_canonical ... ok
[INFO] [stdout] test canonical_is_lexicographically_smallest ... ok
[INFO] [stdout] test kmer_and_rc_count_together ... ok
[INFO] [stdout] test index_roundtrip_preserves_all_entries ... ok
[INFO] [stdout] test unpack_preserves_length ... ok
[INFO] [stdout] test unpack_produces_valid_bases ... ok
[INFO] [stdout] test mixed_case_equals_uppercase ... ok
[INFO] [stdout] test pack_unpack_roundtrip ... ok
[INFO] [stdout] test packing_is_deterministic ... ok
[INFO] [stdout] test soft_masked_equals_uppercase ... ok
[INFO] [stdout] test unpack_bytes_equals_string ... ok
[INFO] [stderr]      Running tests/quality_tests.rs (/opt/rustwide/target/debug/deps/quality_tests-e5139ec4ff519526)
[INFO] [stdout] test total_count_at_most_valid_windows ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 18 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 2.47s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test fasta_ignores_quality_filter ... ok
[INFO] [stdout] test quality_filtering_reduces_kmer_count ... ok
[INFO] [stdout] test zero_quality_threshold_filters_nothing ... ok
[INFO] [stdout] test high_quality_data_unchanged_with_filter ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/streaming_fastq_tests.rs (/opt/rustwide/target/debug/deps/streaming_fastq_tests-db0491e575f349fa)
[INFO] [stdout] 
[INFO] [stdout] running 6 tests
[INFO] [stdout] test sequential_fastq_matches_fasta_counts ... ok
[INFO] [stdout] test sequential_count_from_fastq ... ok
[INFO] [stdout] test sequential_fastq_handles_n_bases ... ok
[INFO] [stdout] test streaming_count_from_fastq ... ok
[INFO] [stdout] test streaming_fastq_matches_fasta_counts ... ok
[INFO] [stdout] test streaming_fastq_handles_n_bases ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/tracing_tests.rs (/opt/rustwide/target/debug/deps/tracing_tests-61bbf07e133d4d81)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests kmerust
[INFO] [stdout] 
[INFO] [stdout] running 50 tests
[INFO] [stdout] test src/builder.rs - builder::KmerCounter (line 41) - compile ... ok
[INFO] [stdout] test src/builder.rs - builder::KmerCounter::count (line 226) - compile ... ok
[INFO] [stdout] test src/builder.rs - builder::KmerCounter::count_streaming (line 500) - compile ... ok
[INFO] [stdout] test src/builder.rs - builder::KmerCounter::histogram (line 274) - compile ... ok
[INFO] [stdout] test src/builder.rs - builder::KmerCounter::count_with_progress (line 308) - compile ... ok
[INFO] [stdout] test src/builder.rs - builder::KmerCounter::count_to_writer (line 384) - compile ... ok
[INFO] [stdout] test src/builder.rs - builder (line 8) - compile ... ok
[INFO] [stdout] test src/builder.rs - builder::KmerCounter::k (line 114) ... ok
[INFO] [stdout] test src/builder.rs - builder::KmerCounter::run (line 355) - compile ... ok
[INFO] [stdout] test src/builder.rs - builder::KmerCounter::k_validated (line 131) ... ok
[INFO] [stdout] test src/builder.rs - builder::KmerCounter::input_format (line 198) ... ok
[INFO] [stdout] test src/builder.rs - builder::KmerCounter::format (line 171) ... ok
[INFO] [stdout] test src/builder.rs - builder::KmerCounter::min_count (line 152) ... ok
[INFO] [stdout] test src/format.rs - format::SequenceFormat::resolve (line 80) ... ok
[INFO] [stdout] test src/index.rs - index::load_index (line 192) - compile ... ok
[INFO] [stdout] test src/index.rs - index (line 32) - compile ... ok
[INFO] [stdout] test src/format.rs - format::SequenceFormat::from_extension (line 37) ... ok
[INFO] [stdout] test src/index.rs - index::save_index (line 147) - compile ... ok
[INFO] [stdout] test src/builder.rs - builder::KmerCounter::new (line 89) ... ok
[INFO] [stdout] test src/histogram.rs - histogram (line 9) ... ok
[INFO] [stdout] test src/input.rs - input (line 8) ... ok
[INFO] [stdout] test src/kmer.rs - kmer::Kmer (line 183) ... ok
[INFO] [stdout] test src/histogram.rs - histogram::compute_histogram (line 72) ... ok
[INFO] [stdout] test src/histogram.rs - histogram::histogram_stats (line 130) ... ok
[INFO] [stdout] test src/input.rs - input::Input::from_path (line 44) ... ok
[INFO] [stdout] test src/kmer.rs - kmer::Kmer<Unpacked>::from_sub (line 233) ... ok
[INFO] [stdout] test src/kmer.rs - kmer::Kmer<Packed>::canonical (line 313) ... ok
[INFO] [stdout] test src/kmer.rs - kmer::Kmer<Unpacked>::pack (line 278) ... ok
[INFO] [stdout] test src/kmer.rs - kmer::KmerLength::new_unchecked (line 104) ... ok
[INFO] [stdout] test src/kmer.rs - kmer::KmerByte::try_from_byte (line 710) ... ok
[INFO] [stdout] test src/kmer.rs - kmer::KmerByte::try_from_bits (line 735) ... ok
[INFO] [stdout] test src/lib.rs - (line 37) - compile ... ok
[INFO] [stdout] test src/kmer.rs - kmer::KmerLength (line 46) ... ok
[INFO] [stdout] test src/kmer.rs - kmer::reverse_complement_bits (line 467) ... ok
[INFO] [stdout] test src/kmer.rs - kmer::KmerLength::new (line 74) ... ok
[INFO] [stdout] test src/lib.rs - (line 63) - compile ... ok
[INFO] [stdout] test src/run.rs - run::run_with_input (line 116) - compile ... ok
[INFO] [stdout] test src/progress.rs - progress (line 8) - compile ... ok
[INFO] [stdout] test src/streaming.rs - streaming::count_kmers_from_input (line 463) - compile ... ok
[INFO] [stdout] test src/run.rs - run::count_kmers_with_progress (line 370) - compile ... ok
[INFO] [stdout] test src/kmer.rs - kmer::validate_and_pack (line 544) ... ok
[INFO] [stdout] test src/kmer.rs - kmer::pack_canonical (line 601) ... ok
[INFO] [stdout] test src/streaming.rs - streaming::count_kmers_sequential (line 244) - compile ... ok
[INFO] [stdout] test src/streaming.rs - streaming::count_kmers_stdin (line 288) - compile ... ok
[INFO] [stdout] test src/streaming.rs - streaming::count_kmers_streaming (line 86) - compile ... ok
[INFO] [stdout] test src/streaming.rs - streaming::count_kmers_streaming_packed (line 142) - compile ... ok
[INFO] [stdout] test src/kmer.rs - kmer::unpack_to_bytes (line 386) ... ok
[INFO] [stdout] test src/streaming.rs - streaming::count_kmers_from_reader_packed (line 420) ... ok
[INFO] [stdout] test src/streaming.rs - streaming::count_kmers_from_reader (line 378) ... ok
[INFO] [stdout] test src/streaming.rs - streaming::count_kmers_from_sequences (line 184) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 50 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 11.13s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "60ca8951f2b64b10c631391e9b9cbbd631516cfb95ea1525c3cd2fd5d8b30a74", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "60ca8951f2b64b10c631391e9b9cbbd631516cfb95ea1525c3cd2fd5d8b30a74", kill_on_drop: false }`
[INFO] [stdout] 60ca8951f2b64b10c631391e9b9cbbd631516cfb95ea1525c3cd2fd5d8b30a74