[INFO] fetching crate genomic-system-finder-hmm 0.1.2...
[INFO] testing genomic-system-finder-hmm-0.1.2 against try#dec9417b8611e34e787a3e4c37686b5131f9e5c5 for pr-154210-1
[INFO] extracting crate genomic-system-finder-hmm 0.1.2 into /workspace/builds/worker-5-tc2/source
[INFO] started tweaking crates.io crate genomic-system-finder-hmm 0.1.2
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate genomic-system-finder-hmm 0.1.2
[INFO] tweaked toml for crates.io crate genomic-system-finder-hmm 0.1.2 written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate genomic-system-finder-hmm 0.1.2 on toolchain dec9417b8611e34e787a3e4c37686b5131f9e5c5
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate genomic-system-finder-hmm 0.1.2 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 2075283c452b524c6d2c2f7488f9291bb5db4aaac297b7060e14b406b88fdf9f
[INFO] running `Command { std: "docker" "start" "-a" "2075283c452b524c6d2c2f7488f9291bb5db4aaac297b7060e14b406b88fdf9f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "2075283c452b524c6d2c2f7488f9291bb5db4aaac297b7060e14b406b88fdf9f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2075283c452b524c6d2c2f7488f9291bb5db4aaac297b7060e14b406b88fdf9f", kill_on_drop: false }`
[INFO] [stdout] 2075283c452b524c6d2c2f7488f9291bb5db4aaac297b7060e14b406b88fdf9f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 1f3748b542731d0b0ac682879503b08bd860be76d9f9fc802d86aced7fcb6c9b
[INFO] running `Command { std: "docker" "start" "-a" "1f3748b542731d0b0ac682879503b08bd860be76d9f9fc802d86aced7fcb6c9b", kill_on_drop: false }`
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]    Compiling genomic-system-finder-hmm v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2.20s
[INFO] running `Command { std: "docker" "inspect" "1f3748b542731d0b0ac682879503b08bd860be76d9f9fc802d86aced7fcb6c9b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1f3748b542731d0b0ac682879503b08bd860be76d9f9fc802d86aced7fcb6c9b", kill_on_drop: false }`
[INFO] [stdout] 1f3748b542731d0b0ac682879503b08bd860be76d9f9fc802d86aced7fcb6c9b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 6fbb45fdafb0438c436274d326ba4094bdf012c6532bc4911b4fb55227f6beea
[INFO] running `Command { std: "docker" "start" "-a" "6fbb45fdafb0438c436274d326ba4094bdf012c6532bc4911b4fb55227f6beea", kill_on_drop: false }`
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]    Compiling linux-raw-sys v0.12.1
[INFO] [stderr]    Compiling bitflags v2.11.0
[INFO] [stderr]    Compiling once_cell v1.21.3
[INFO] [stderr]    Compiling getrandom v0.4.2
[INFO] [stderr]    Compiling tempfile v3.27.0
[INFO] [stderr]    Compiling genomic-system-finder-hmm v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 3.55s
[INFO] running `Command { std: "docker" "inspect" "6fbb45fdafb0438c436274d326ba4094bdf012c6532bc4911b4fb55227f6beea", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6fbb45fdafb0438c436274d326ba4094bdf012c6532bc4911b4fb55227f6beea", kill_on_drop: false }`
[INFO] [stdout] 6fbb45fdafb0438c436274d326ba4094bdf012c6532bc4911b4fb55227f6beea
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 3830c6966efa33f11c9f25b9d26d96f39bf241623b370de81b20fc0c5686d212
[INFO] running `Command { std: "docker" "start" "-a" "3830c6966efa33f11c9f25b9d26d96f39bf241623b370de81b20fc0c5686d212", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.05s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/genomic_system_finder_hmm-f6f0b33be4351081)
[INFO] [stdout] 
[INFO] [stdout] running 12 tests
[INFO] [stdout] test alphabet::tests::test_encode_sequence ... ok
[INFO] [stdout] test msv::tests::test_msv_filter_random_sequence_rejected ... ok
[INFO] [stdout] test msv::tests::test_msv_filter_empty_sequence ... ok
[INFO] [stdout] test alphabet::tests::test_encode_amino ... ok
[INFO] [stdout] test parser::tests::test_parse_transitions ... ok
[INFO] [stdout] test parser::tests::test_parse_scores ... ok
[INFO] [stdout] test stats::tests::test_evalue_from_viterbi ... ok
[INFO] [stdout] test msv::tests::test_msv_filter_good_sequence_passes ... ok
[INFO] [stdout] test stats::tests::test_gumbel_survival_high_score ... ok
[INFO] [stdout] test stats::tests::test_nats_to_bits ... ok
[INFO] [stdout] test viterbi::tests::test_viterbi_empty_sequence ... ok
[INFO] [stdout] test stats::tests::test_gumbel_survival_low_score ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 12 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/integration_hmm.rs (/opt/rustwide/target/debug/deps/integration_hmm-d5ada48ca25479e3)
[INFO] [stdout] 
[INFO] [stdout] running 8 tests
[INFO] [stdout] test test_parse_all_profiles ... ok
[INFO] [stdout] test test_hmm_search_t1ss_omf ... ok
[INFO] [stdout] test test_hmm_search_t1ss_mfp ... ok
[INFO] [stdout] test test_debug_t2ss_gspd ... ok
[INFO] [stdout] test test_debug_t1ss_abc_boundaries ... ok
[INFO] [stdout] test test_hmm_search_t1ss_abc ... ok
[INFO] [stdout] test test_hmm_search_t2ss_gspd ... ok
[INFO] [stdout] test test_full_pipeline_ordered_circular ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 34.94s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests genomic_system_finder_hmm
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "3830c6966efa33f11c9f25b9d26d96f39bf241623b370de81b20fc0c5686d212", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3830c6966efa33f11c9f25b9d26d96f39bf241623b370de81b20fc0c5686d212", kill_on_drop: false }`
[INFO] [stdout] 3830c6966efa33f11c9f25b9d26d96f39bf241623b370de81b20fc0c5686d212