[INFO] fetching crate genomic-system-finder-cli 0.1.2...
[INFO] testing genomic-system-finder-cli-0.1.2 against try#dec9417b8611e34e787a3e4c37686b5131f9e5c5 for pr-154210-1
[INFO] extracting crate genomic-system-finder-cli 0.1.2 into /workspace/builds/worker-2-tc2/source
[INFO] started tweaking crates.io crate genomic-system-finder-cli 0.1.2
[INFO] finished tweaking crates.io crate genomic-system-finder-cli 0.1.2
[INFO] tweaked toml for crates.io crate genomic-system-finder-cli 0.1.2 written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate genomic-system-finder-cli 0.1.2 on toolchain dec9417b8611e34e787a3e4c37686b5131f9e5c5
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate genomic-system-finder-cli 0.1.2 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 77dca3d363551cd5e4a6fdb6569c1f9a05d58f61cb33bfdf5dccda2a8bab0d93
[INFO] running `Command { std: "docker" "start" "-a" "77dca3d363551cd5e4a6fdb6569c1f9a05d58f61cb33bfdf5dccda2a8bab0d93", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "77dca3d363551cd5e4a6fdb6569c1f9a05d58f61cb33bfdf5dccda2a8bab0d93", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "77dca3d363551cd5e4a6fdb6569c1f9a05d58f61cb33bfdf5dccda2a8bab0d93", kill_on_drop: false }`
[INFO] [stdout] 77dca3d363551cd5e4a6fdb6569c1f9a05d58f61cb33bfdf5dccda2a8bab0d93
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 931002af4f308f6d42599eb18d2b4921ac3b47186be0760ad01eac99b14acb54
[INFO] running `Command { std: "docker" "start" "-a" "931002af4f308f6d42599eb18d2b4921ac3b47186be0760ad01eac99b14acb54", kill_on_drop: false }`
[INFO] [stderr]    Compiling libm v0.2.16
[INFO] [stderr]    Compiling libc v0.2.183
[INFO] [stderr]    Compiling zerocopy v0.8.42
[INFO] [stderr]    Compiling bytemuck v1.25.0
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling aho-corasick v1.1.4
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling regex-syntax v0.8.10
[INFO] [stderr]    Compiling fixedbitset v0.5.7
[INFO] [stderr]    Compiling hashbrown v0.15.5
[INFO] [stderr]    Compiling csv-core v0.1.13
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling winnow v0.7.15
[INFO] [stderr]    Compiling safe_arch v0.7.4
[INFO] [stderr]    Compiling simd-adler32 v0.3.8
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]    Compiling csv v1.4.0
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling itertools v0.14.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling petgraph v0.8.3
[INFO] [stderr]    Compiling bytecount v0.6.9
[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling wide v0.7.33
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling clap_builder v4.5.60
[INFO] [stderr]    Compiling flate2 v1.1.9
[INFO] [stderr]    Compiling getrandom v0.2.17
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling serde_json v1.0.149
[INFO] [stderr]    Compiling petgraph v0.7.1
[INFO] [stderr]    Compiling quick-xml v0.37.5
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling simba v0.9.1
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling ordered-float v5.1.0
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling clap_derive v4.5.55
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]    Compiling genomic-system-finder-hmm v0.1.2
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling clap v4.5.60
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling toml_datetime v0.6.11
[INFO] [stderr]    Compiling serde_spanned v0.6.9
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling multimap v0.10.1
[INFO] [stderr]    Compiling toml_edit v0.22.27
[INFO] [stderr]    Compiling toml v0.8.23
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v2.3.0
[INFO] [stderr]    Compiling genomic-system-finder-core v0.1.2
[INFO] [stderr]    Compiling genomic-system-finder-cli v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 40.97s
[INFO] running `Command { std: "docker" "inspect" "931002af4f308f6d42599eb18d2b4921ac3b47186be0760ad01eac99b14acb54", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "931002af4f308f6d42599eb18d2b4921ac3b47186be0760ad01eac99b14acb54", kill_on_drop: false }`
[INFO] [stdout] 931002af4f308f6d42599eb18d2b4921ac3b47186be0760ad01eac99b14acb54
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 37d5b4ec36b4684e476dbb756199405c50c04cd82837c221581fdbaa5c7ae5f5
[INFO] running `Command { std: "docker" "start" "-a" "37d5b4ec36b4684e476dbb756199405c50c04cd82837c221581fdbaa5c7ae5f5", kill_on_drop: false }`
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling getrandom v0.2.17
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]    Compiling getrandom v0.4.2
[INFO] [stderr]    Compiling predicates-core v1.0.10
[INFO] [stderr]    Compiling float-cmp v0.10.0
[INFO] [stderr]    Compiling linux-raw-sys v0.12.1
[INFO] [stderr]    Compiling assert_cmd v2.2.0
[INFO] [stderr]    Compiling normalize-line-endings v0.3.0
[INFO] [stderr]    Compiling difflib v0.4.0
[INFO] [stderr]    Compiling bitflags v2.11.0
[INFO] [stderr]    Compiling termtree v0.5.1
[INFO] [stderr]    Compiling wait-timeout v0.2.1
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling predicates-tree v1.0.13
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling tempfile v3.27.0
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]    Compiling bstr v1.12.1
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling predicates v3.1.4
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v2.3.0
[INFO] [stderr]    Compiling genomic-system-finder-core v0.1.2
[INFO] [stderr]    Compiling genomic-system-finder-cli v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 23.11s
[INFO] running `Command { std: "docker" "inspect" "37d5b4ec36b4684e476dbb756199405c50c04cd82837c221581fdbaa5c7ae5f5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "37d5b4ec36b4684e476dbb756199405c50c04cd82837c221581fdbaa5c7ae5f5", kill_on_drop: false }`
[INFO] [stdout] 37d5b4ec36b4684e476dbb756199405c50c04cd82837c221581fdbaa5c7ae5f5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 62e29d8c0a2d5f1d01edaf1f2e483711eacb0495999cfc8b3ec56fe18357b92f
[INFO] running `Command { std: "docker" "start" "-a" "62e29d8c0a2d5f1d01edaf1f2e483711eacb0495999cfc8b3ec56fe18357b92f", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.17s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/genomic_system_finder-57b30db4f8143716)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "62e29d8c0a2d5f1d01edaf1f2e483711eacb0495999cfc8b3ec56fe18357b92f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "62e29d8c0a2d5f1d01edaf1f2e483711eacb0495999cfc8b3ec56fe18357b92f", kill_on_drop: false }`
[INFO] [stdout] 62e29d8c0a2d5f1d01edaf1f2e483711eacb0495999cfc8b3ec56fe18357b92f