[INFO] cloning repository https://github.com/geokousis/Sanger-Analysis-Tool [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/geokousis/Sanger-Analysis-Tool" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgeokousis%2FSanger-Analysis-Tool", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgeokousis%2FSanger-Analysis-Tool'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 3046f27057965f26822231e8f37aef9711042cd9 [INFO] testing geokousis/Sanger-Analysis-Tool against try#dec9417b8611e34e787a3e4c37686b5131f9e5c5 for pr-154210-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgeokousis%2FSanger-Analysis-Tool" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/geokousis/Sanger-Analysis-Tool [INFO] finished tweaking git repo https://github.com/geokousis/Sanger-Analysis-Tool [INFO] tweaked toml for git repo https://github.com/geokousis/Sanger-Analysis-Tool written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/geokousis/Sanger-Analysis-Tool on toolchain dec9417b8611e34e787a3e4c37686b5131f9e5c5 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/geokousis/Sanger-Analysis-Tool already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 7a44bb5a91caf020e3195c5719a790e7c3f8eadff32242fcd400964d5b615fba [INFO] running `Command { std: "docker" "start" "-a" "7a44bb5a91caf020e3195c5719a790e7c3f8eadff32242fcd400964d5b615fba", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7a44bb5a91caf020e3195c5719a790e7c3f8eadff32242fcd400964d5b615fba", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7a44bb5a91caf020e3195c5719a790e7c3f8eadff32242fcd400964d5b615fba", kill_on_drop: false }` [INFO] [stdout] 7a44bb5a91caf020e3195c5719a790e7c3f8eadff32242fcd400964d5b615fba [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 948e5d65f5031d699627a41bb4a28e2e67580e9f60252881362da6290cb9adde [INFO] running `Command { std: "docker" "start" "-a" "948e5d65f5031d699627a41bb4a28e2e67580e9f60252881362da6290cb9adde", kill_on_drop: false }` [INFO] [stderr] Compiling N-credible v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1.62s [INFO] running `Command { std: "docker" "inspect" "948e5d65f5031d699627a41bb4a28e2e67580e9f60252881362da6290cb9adde", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "948e5d65f5031d699627a41bb4a28e2e67580e9f60252881362da6290cb9adde", kill_on_drop: false }` [INFO] [stdout] 948e5d65f5031d699627a41bb4a28e2e67580e9f60252881362da6290cb9adde [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8a7ccc8bbb0f6aca468fc1f81bab85a10a3c339493be1105639f9e08a8e447e9 [INFO] running `Command { std: "docker" "start" "-a" "8a7ccc8bbb0f6aca468fc1f81bab85a10a3c339493be1105639f9e08a8e447e9", kill_on_drop: false }` [INFO] [stderr] Compiling N-credible v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 2.00s [INFO] running `Command { std: "docker" "inspect" "8a7ccc8bbb0f6aca468fc1f81bab85a10a3c339493be1105639f9e08a8e447e9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8a7ccc8bbb0f6aca468fc1f81bab85a10a3c339493be1105639f9e08a8e447e9", kill_on_drop: false }` [INFO] [stdout] 8a7ccc8bbb0f6aca468fc1f81bab85a10a3c339493be1105639f9e08a8e447e9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 7f1accc0821e92b6384c2111e768fbad45f078a94bd372914438c2472cc3f01e [INFO] running `Command { std: "docker" "start" "-a" "7f1accc0821e92b6384c2111e768fbad45f078a94bd372914438c2472cc3f01e", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.02s [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/N_credible-4fe49b12fad9e7f2) [INFO] [stdout] [INFO] [stdout] running 15 tests [INFO] [stdout] test tests::candidate_windows_find_expected_region ... ok [INFO] [stdout] test tests::best_reference_is_selected_per_query ... ok [INFO] [stdout] test tests::exhaustive_mode_bypasses_seeding ... ok [INFO] [stdout] test tests::indels_are_reported ... ok [INFO] [stdout] test tests::iupac_matching_works ... ok [INFO] [stdout] test tests::non_iupac_mismatch_is_reported_as_homozygous_alt ... ok [INFO] [stdout] test tests::ambiguous_iupac_is_not_counted_as_mismatch ... ok [INFO] [stdout] test tests::iupac_het_variant_is_reported_as_0_1 ... ok [INFO] [stdout] test tests::reverse_complement_works ... ok [INFO] [stdout] test tests::merged_vcf_contains_all_samples_per_site ... ok [INFO] [stdout] test tests::effect_vcf_contains_only_effect_sites ... ok [INFO] [stdout] test tests::fasta_parser_reads_multiple_records ... ok [INFO] [stdout] test tests::semiglobal_maps_query_to_reference_window ... ok [INFO] [stdout] test tests::soft_clip_query_ends_changes_terminal_insertions_to_s ... ok [INFO] [stdout] test tests::genbank_parser_reads_record_and_features ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "7f1accc0821e92b6384c2111e768fbad45f078a94bd372914438c2472cc3f01e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7f1accc0821e92b6384c2111e768fbad45f078a94bd372914438c2472cc3f01e", kill_on_drop: false }` [INFO] [stdout] 7f1accc0821e92b6384c2111e768fbad45f078a94bd372914438c2472cc3f01e