[INFO] fetching crate thaf 0.0.5... [INFO] testing thaf-0.0.5 against master#562dee4820c458d823175268e41601d4c060588a for pr-154210-1 [INFO] extracting crate thaf 0.0.5 into /workspace/builds/worker-5-tc1/source [INFO] started tweaking crates.io crate thaf 0.0.5 [INFO] removed 0 missing tests [INFO] finished tweaking crates.io crate thaf 0.0.5 [INFO] tweaked toml for crates.io crate thaf 0.0.5 written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate thaf 0.0.5 on toolchain 562dee4820c458d823175268e41601d4c060588a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate thaf 0.0.5 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded derefable v0.1.0 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded bio v3.0.0 [INFO] [stderr] Downloaded petgraph v0.8.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 2df3a2c245e470e04a829fdd753bbe17468a31b85b3db27f014c716499975393 [INFO] running `Command { std: "docker" "start" "-a" "2df3a2c245e470e04a829fdd753bbe17468a31b85b3db27f014c716499975393", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "2df3a2c245e470e04a829fdd753bbe17468a31b85b3db27f014c716499975393", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2df3a2c245e470e04a829fdd753bbe17468a31b85b3db27f014c716499975393", kill_on_drop: false }` [INFO] [stdout] 2df3a2c245e470e04a829fdd753bbe17468a31b85b3db27f014c716499975393 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9b1bdcb1befc039c7c360371bbdb380ad110e86e71f33ff0a1e900d5c287801e [INFO] running `Command { std: "docker" "start" "-a" "9b1bdcb1befc039c7c360371bbdb380ad110e86e71f33ff0a1e900d5c287801e", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.174 [INFO] [stderr] Compiling memchr v2.7.5 [INFO] [stderr] Compiling bytemuck v1.23.1 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling rustversion v1.0.21 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling typenum v1.18.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling syn v2.0.104 [INFO] [stderr] Compiling ppv-lite86 v0.2.21 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling foldhash v0.1.5 [INFO] [stderr] Compiling proc-macro-error-attr2 v2.0.0 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.1 [INFO] [stderr] Compiling anstyle v1.0.11 [INFO] [stderr] Compiling hashbrown v0.15.4 [INFO] [stderr] Compiling anstyle-query v1.1.3 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling anyhow v1.0.98 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling anstream v0.6.19 [INFO] [stderr] Compiling clap_lex v0.7.5 [INFO] [stderr] Compiling itertools v0.14.0 [INFO] [stderr] Compiling wide v0.7.33 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling csv-core v0.1.12 [INFO] [stderr] Compiling indexmap v2.10.0 [INFO] [stderr] Compiling bit-set v0.8.0 [INFO] [stderr] Compiling clap_builder v4.5.41 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling getrandom v0.2.16 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v5.0.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling bytecount v0.6.9 [INFO] [stderr] Compiling strum v0.26.3 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling petgraph v0.8.2 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Compiling simba v0.9.0 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling derefable v0.1.0 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling proc-macro-error2 v2.0.1 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling clap_derive v4.5.41 [INFO] [stderr] Compiling getset v0.1.6 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling clap v4.5.41 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling nalgebra v0.33.2 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling multimap v0.10.1 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling statrs v0.18.0 [INFO] [stderr] Compiling bio v3.0.0 [INFO] [stderr] Compiling thaf v0.0.5 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 38.24s [INFO] running `Command { std: "docker" "inspect" "9b1bdcb1befc039c7c360371bbdb380ad110e86e71f33ff0a1e900d5c287801e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9b1bdcb1befc039c7c360371bbdb380ad110e86e71f33ff0a1e900d5c287801e", kill_on_drop: false }` [INFO] [stdout] 9b1bdcb1befc039c7c360371bbdb380ad110e86e71f33ff0a1e900d5c287801e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] aeaf06b1cfeef5ce34008e18807a904ea9e2d27b1d37eb10286f56f89d2009a8 [INFO] running `Command { std: "docker" "start" "-a" "aeaf06b1cfeef5ce34008e18807a904ea9e2d27b1d37eb10286f56f89d2009a8", kill_on_drop: false }` [INFO] [stderr] Compiling rustix v1.0.7 [INFO] [stderr] Compiling getrandom v0.3.3 [INFO] [stderr] Compiling tempfile v3.20.0 [INFO] [stderr] Compiling thaf v0.0.5 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 5.25s [INFO] running `Command { std: "docker" "inspect" "aeaf06b1cfeef5ce34008e18807a904ea9e2d27b1d37eb10286f56f89d2009a8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "aeaf06b1cfeef5ce34008e18807a904ea9e2d27b1d37eb10286f56f89d2009a8", kill_on_drop: false }` [INFO] [stdout] aeaf06b1cfeef5ce34008e18807a904ea9e2d27b1d37eb10286f56f89d2009a8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] c72e004a2878a22da307c2a28d4fefd27a8db7fa619a0ce4ebf29d6b96f7a74e [INFO] running `Command { std: "docker" "start" "-a" "c72e004a2878a22da307c2a28d4fefd27a8db7fa619a0ce4ebf29d6b96f7a74e", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.15s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/thaf-af1f0a7bff2cfc49) [INFO] [stdout] [INFO] [stdout] running 9 tests [INFO] [stdout] test gff3::tests::test_parse_attributes_basic ... ok [INFO] [stdout] test transcript_builder::tests::test_build_transcripts_from_regions ... ok [INFO] [stdout] test transcript_builder::tests::test_extract_transcript_sequence_plus ... ok [INFO] [stdout] test transcript_builder::tests::test_extract_transcript_sequence_minus ... ok [INFO] [stdout] test transcript_builder::tests::test_transcript_sort_minus ... ok [INFO] [stdout] test transcript_builder::tests::test_transcript_sort_plus ... ok [INFO] [stdout] test gff3::tests::test_missing_parents ... ok [INFO] [stdout] test gff3::tests::test_parse_gff3_to_regions_simple ... ok [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/thaf-912c63e1d0072ec6) [INFO] [stdout] test transcript_builder::tests::test_transcript_overlap_fails ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.19s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 9 tests [INFO] [stdout] test transcript_builder::tests::test_build_transcripts_from_regions ... ok [INFO] [stdout] test transcript_builder::tests::test_extract_transcript_sequence_minus ... ok [INFO] [stdout] test gff3::tests::test_parse_gff3_to_regions_simple ... ok [INFO] [stdout] test gff3::tests::test_parse_attributes_basic ... ok [INFO] [stdout] test transcript_builder::tests::test_extract_transcript_sequence_plus ... ok [INFO] [stdout] test transcript_builder::tests::test_transcript_overlap_fails ... ok [INFO] [stdout] test transcript_builder::tests::test_transcript_sort_plus ... ok [INFO] [stdout] test transcript_builder::tests::test_transcript_sort_minus ... ok [INFO] [stdout] test gff3::tests::test_missing_parents ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Running tests/minitest.rs (/opt/rustwide/target/debug/deps/minitest-be8abe96f9e00a3e) [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test minimal_transcript_extraction ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Doc-tests thaf [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "c72e004a2878a22da307c2a28d4fefd27a8db7fa619a0ce4ebf29d6b96f7a74e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c72e004a2878a22da307c2a28d4fefd27a8db7fa619a0ce4ebf29d6b96f7a74e", kill_on_drop: false }` [INFO] [stdout] c72e004a2878a22da307c2a28d4fefd27a8db7fa619a0ce4ebf29d6b96f7a74e