[INFO] fetching crate rustome 0.1.1... [INFO] testing rustome-0.1.1 against master#562dee4820c458d823175268e41601d4c060588a for pr-154210-1 [INFO] extracting crate rustome 0.1.1 into /workspace/builds/worker-5-tc1/source [INFO] started tweaking crates.io crate rustome 0.1.1 [INFO] finished tweaking crates.io crate rustome 0.1.1 [INFO] tweaked toml for crates.io crate rustome 0.1.1 written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate rustome 0.1.1 on toolchain 562dee4820c458d823175268e41601d4c060588a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate rustome 0.1.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 8dba1467423268cb9f2fda1612788a23c2b29344d81ba1caa71cb827eced9f50 [INFO] running `Command { std: "docker" "start" "-a" "8dba1467423268cb9f2fda1612788a23c2b29344d81ba1caa71cb827eced9f50", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "8dba1467423268cb9f2fda1612788a23c2b29344d81ba1caa71cb827eced9f50", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8dba1467423268cb9f2fda1612788a23c2b29344d81ba1caa71cb827eced9f50", kill_on_drop: false }` [INFO] [stdout] 8dba1467423268cb9f2fda1612788a23c2b29344d81ba1caa71cb827eced9f50 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f6a672b7ed0d96c24d629e88db5589d1b7def20ced3661152115d9a17ec6b65b [INFO] running `Command { std: "docker" "start" "-a" "f6a672b7ed0d96c24d629e88db5589d1b7def20ced3661152115d9a17ec6b65b", kill_on_drop: false }` [INFO] [stderr] Compiling rustome v0.1.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 0.34s [INFO] running `Command { std: "docker" "inspect" "f6a672b7ed0d96c24d629e88db5589d1b7def20ced3661152115d9a17ec6b65b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f6a672b7ed0d96c24d629e88db5589d1b7def20ced3661152115d9a17ec6b65b", kill_on_drop: false }` [INFO] [stdout] f6a672b7ed0d96c24d629e88db5589d1b7def20ced3661152115d9a17ec6b65b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c2d56aae7fd041c4cfc9ef17c0e943cfa7784c01b53f4dc452656dd0228502f6 [INFO] running `Command { std: "docker" "start" "-a" "c2d56aae7fd041c4cfc9ef17c0e943cfa7784c01b53f4dc452656dd0228502f6", kill_on_drop: false }` [INFO] [stderr] Compiling rustome v0.1.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.31s [INFO] running `Command { std: "docker" "inspect" "c2d56aae7fd041c4cfc9ef17c0e943cfa7784c01b53f4dc452656dd0228502f6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c2d56aae7fd041c4cfc9ef17c0e943cfa7784c01b53f4dc452656dd0228502f6", kill_on_drop: false }` [INFO] [stdout] c2d56aae7fd041c4cfc9ef17c0e943cfa7784c01b53f4dc452656dd0228502f6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] e465d24a28c56f3eaaafea08ebdee6f46ceed97dceb6e605e91bc9bd958ec7d2 [INFO] running `Command { std: "docker" "start" "-a" "e465d24a28c56f3eaaafea08ebdee6f46ceed97dceb6e605e91bc9bd958ec7d2", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.02s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/rustome-1baca78dfd07467e) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests rustome [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test src/upgma/algorithm.rs - upgma::algorithm::create_tree (line 73) ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- src/upgma/algorithm.rs - upgma::algorithm::create_tree (line 73) stdout ---- [INFO] [stdout] error[E0433]: cannot find type `DNuc` in this scope [INFO] [stdout] --> src/upgma/algorithm.rs:75:31 [INFO] [stdout] | [INFO] [stdout] 75 | ("seq1".to_string(), vec![DNuc::A, DNuc::C, DNuc::G]), [INFO] [stdout] | ^^^^ use of undeclared type `DNuc` [INFO] [stdout] | [INFO] [stdout] help: consider importing this enum [INFO] [stdout] | [INFO] [stdout] 73 + use rustome::sequences::DNuc; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] error[E0433]: cannot find type `DNuc` in this scope [INFO] [stdout] --> src/upgma/algorithm.rs:75:40 [INFO] [stdout] | [INFO] [stdout] 75 | ("seq1".to_string(), vec![DNuc::A, DNuc::C, DNuc::G]), [INFO] [stdout] | ^^^^ use of undeclared type `DNuc` [INFO] [stdout] | [INFO] [stdout] help: consider importing this enum [INFO] [stdout] | [INFO] [stdout] 73 + use rustome::sequences::DNuc; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] error[E0433]: cannot find type `DNuc` in this scope [INFO] [stdout] --> src/upgma/algorithm.rs:75:49 [INFO] [stdout] | [INFO] [stdout] 75 | ("seq1".to_string(), vec![DNuc::A, DNuc::C, DNuc::G]), [INFO] [stdout] | ^^^^ use of undeclared type `DNuc` [INFO] [stdout] | [INFO] [stdout] help: consider importing this enum [INFO] [stdout] | [INFO] [stdout] 73 + use rustome::sequences::DNuc; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] error[E0433]: cannot find type `DNuc` in this scope [INFO] [stdout] --> src/upgma/algorithm.rs:76:31 [INFO] [stdout] | [INFO] [stdout] 76 | ("seq2".to_string(), vec![DNuc::A, DNuc::G, DNuc::G]), [INFO] [stdout] | ^^^^ use of undeclared type `DNuc` [INFO] [stdout] | [INFO] [stdout] help: consider importing this enum [INFO] [stdout] | [INFO] [stdout] 73 + use rustome::sequences::DNuc; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] error[E0433]: cannot find type `DNuc` in this scope [INFO] [stdout] --> src/upgma/algorithm.rs:76:40 [INFO] [stdout] | [INFO] [stdout] 76 | ("seq2".to_string(), vec![DNuc::A, DNuc::G, DNuc::G]), [INFO] [stdout] | ^^^^ use of undeclared type `DNuc` [INFO] [stdout] | [INFO] [stdout] help: consider importing this enum [INFO] [stdout] | [INFO] [stdout] 73 + use rustome::sequences::DNuc; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] error[E0433]: cannot find type `DNuc` in this scope [INFO] [stdout] --> src/upgma/algorithm.rs:76:49 [INFO] [stdout] | [INFO] [stdout] 76 | ("seq2".to_string(), vec![DNuc::A, DNuc::G, DNuc::G]), [INFO] [stdout] | ^^^^ use of undeclared type `DNuc` [INFO] [stdout] | [INFO] [stdout] help: consider importing this enum [INFO] [stdout] | [INFO] [stdout] 73 + use rustome::sequences::DNuc; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] error[E0433]: cannot find type `Scoring` in this scope [INFO] [stdout] --> src/upgma/algorithm.rs:78:15 [INFO] [stdout] | [INFO] [stdout] 78 | let scoring = Scoring::default(); [INFO] [stdout] | ^^^^^^^ use of undeclared type `Scoring` [INFO] [stdout] | [INFO] [stdout] help: a struct with a similar name exists [INFO] [stdout] | [INFO] [stdout] 78 - let scoring = Scoring::default(); [INFO] [stdout] 78 + let scoring = String::default(); [INFO] [stdout] | [INFO] [stdout] help: consider importing this struct [INFO] [stdout] | [INFO] [stdout] 73 + use rustome::alignment::Scoring; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] error[E0425]: cannot find function `create_tree` in this scope [INFO] [stdout] --> src/upgma/algorithm.rs:79:12 [INFO] [stdout] | [INFO] [stdout] 79 | let tree = create_tree(sequences, scoring); [INFO] [stdout] | ^^^^^^^^^^^ not found in this scope [INFO] [stdout] | [INFO] [stdout] help: consider importing this function [INFO] [stdout] | [INFO] [stdout] 73 + use rustome::upgma::algorithm::create_tree; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] error: aborting due to 8 previous errors [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0425, E0433. [INFO] [stdout] For more information about an error, try `rustc --explain E0425`. [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] src/upgma/algorithm.rs - upgma::algorithm::create_tree (line 73) [INFO] [stdout] [INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.09s [INFO] [stdout] [INFO] [stdout] all doctests ran in 0.18s; merged doctests compilation took 0.08s [INFO] [stderr] error: doctest failed, to rerun pass `--doc` [INFO] running `Command { std: "docker" "inspect" "e465d24a28c56f3eaaafea08ebdee6f46ceed97dceb6e605e91bc9bd958ec7d2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e465d24a28c56f3eaaafea08ebdee6f46ceed97dceb6e605e91bc9bd958ec7d2", kill_on_drop: false }` [INFO] [stdout] e465d24a28c56f3eaaafea08ebdee6f46ceed97dceb6e605e91bc9bd958ec7d2