[INFO] fetching crate phyloalifold 0.1.3... [INFO] testing phyloalifold-0.1.3 against master#562dee4820c458d823175268e41601d4c060588a for pr-154210-1 [INFO] extracting crate phyloalifold 0.1.3 into /workspace/builds/worker-6-tc1/source [INFO] started tweaking crates.io crate phyloalifold 0.1.3 [INFO] finished tweaking crates.io crate phyloalifold 0.1.3 [INFO] tweaked toml for crates.io crate phyloalifold 0.1.3 written to /workspace/builds/worker-6-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate phyloalifold 0.1.3 on toolchain 562dee4820c458d823175268e41601d4c060588a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate phyloalifold 0.1.3 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: `package.edition` is unspecified, defaulting to `2015` while the latest is `2024` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded rna-algos v0.1.14 [INFO] [stderr] Downloaded num_cpus v1.12.0 [INFO] [stderr] Downloaded serde_derive v1.0.104 [INFO] [stderr] Downloaded serde v1.0.104 [INFO] [stderr] Downloaded approx v0.1.1 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded ordered-float v0.5.2 [INFO] [stderr] Downloaded bit-set v0.4.0 [INFO] [stderr] Downloaded matrixmultiply v0.1.15 [INFO] [stderr] Downloaded bit-vec v0.4.4 [INFO] [stderr] Downloaded bv v0.7.4 [INFO] [stderr] Downloaded ryu v1.0.2 [INFO] [stderr] Downloaded byteorder v1.3.4 [INFO] [stderr] Downloaded itertools v0.7.11 [INFO] [stderr] Downloaded ndarray v0.9.1 [INFO] [stderr] Downloaded lazy_static v0.1.16 [INFO] [stderr] Downloaded itertools v0.6.5 [INFO] [stderr] Downloaded bstr v0.2.11 [INFO] [stderr] Downloaded num-complex v0.1.43 [INFO] [stderr] Downloaded ucd-util v0.1.7 [INFO] [stderr] Downloaded quote v1.0.3 [INFO] [stderr] Downloaded bytecount v0.3.2 [INFO] [stderr] Downloaded itoa v0.4.5 [INFO] [stderr] Downloaded csv v1.1.3 [INFO] [stderr] Downloaded custom_derive v0.1.7 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded multimap v0.4.0 [INFO] [stderr] Downloaded rawpointer v0.1.0 [INFO] [stderr] Downloaded num-traits v0.1.43 [INFO] [stderr] Downloaded rna-ss-params v0.1.16 [INFO] [stderr] Downloaded phyloprob v0.1.2 [INFO] [stderr] Downloaded bio-seq-algos v0.1.15 [INFO] [stderr] Downloaded phylofold v0.1.2 [INFO] [stderr] Downloaded bio v0.20.3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f81177c68fe03b872f70e1907e1c0759a62781c117028139cc4f53bcc71f23ce [INFO] running `Command { std: "docker" "start" "-a" "f81177c68fe03b872f70e1907e1c0759a62781c117028139cc4f53bcc71f23ce", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f81177c68fe03b872f70e1907e1c0759a62781c117028139cc4f53bcc71f23ce", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f81177c68fe03b872f70e1907e1c0759a62781c117028139cc4f53bcc71f23ce", kill_on_drop: false }` [INFO] [stdout] f81177c68fe03b872f70e1907e1c0759a62781c117028139cc4f53bcc71f23ce [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] cef47e0dd943443f9b1b63735733de11c1497e8a21a8eabdc7d5c2a05b7f41a3 [INFO] running `Command { std: "docker" "start" "-a" "cef47e0dd943443f9b1b63735733de11c1497e8a21a8eabdc7d5c2a05b7f41a3", kill_on_drop: false }` [INFO] [stderr] warning: `package.edition` is unspecified, defaulting to `2015` while the latest is `2024` [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling proc-macro2 v1.0.9 [INFO] [stderr] Compiling syn v1.0.16 [INFO] [stderr] Compiling serde v1.0.104 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Compiling libc v0.2.67 [INFO] [stderr] Compiling either v1.5.3 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling ryu v1.0.2 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling ndarray v0.9.1 [INFO] [stderr] Compiling void v1.0.2 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling bv v0.7.4 [INFO] [stderr] Compiling ucd-util v0.1.7 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling unreachable v1.0.0 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling itertools v0.6.5 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling utf8-ranges v1.0.4 [INFO] [stderr] Compiling lazy_static v0.1.16 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling bit-vec v0.4.4 [INFO] [stderr] Compiling itoa v0.4.5 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling lazy_static v0.2.11 [INFO] [stderr] Compiling bit-set v0.4.0 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling unicode-width v0.1.7 [INFO] [stderr] Compiling approx v0.1.1 [INFO] [stderr] Compiling itertools v0.8.2 [INFO] [stderr] Compiling scoped_threadpool v0.1.9 [INFO] [stderr] Compiling getopts v0.2.21 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling quote v1.0.3 [INFO] [stderr] Compiling time v0.1.42 [INFO] [stderr] Compiling num_cpus v1.12.0 [INFO] [stderr] Compiling bio-seq-algos v0.1.15 [INFO] [stderr] Compiling rna-ss-params v0.1.16 [INFO] [stderr] Compiling num-traits v0.1.43 [INFO] [stderr] Compiling num-complex v0.1.43 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v0.5.2 [INFO] [stderr] Compiling serde_derive v1.0.104 [INFO] [stderr] Compiling bstr v0.2.11 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling csv v1.1.3 [INFO] [stderr] Compiling bio v0.20.3 [INFO] [stderr] Compiling rna-algos v0.1.14 [INFO] [stderr] Compiling phyloprob v0.1.2 [INFO] [stderr] Compiling phylofold v0.1.2 [INFO] [stderr] Compiling phyloalifold v0.1.3 (/opt/rustwide/workdir) [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/main.rs:40:72 [INFO] [stdout] | [INFO] [stdout] 40 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` (part of `#[warn(rust_2021_compatibility)]`) on by default [INFO] [stdout] help: add a "{}" format string to `Display` the message [INFO] [stdout] | [INFO] [stdout] 40 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stdout] | +++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 22.45s [INFO] running `Command { std: "docker" "inspect" "cef47e0dd943443f9b1b63735733de11c1497e8a21a8eabdc7d5c2a05b7f41a3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cef47e0dd943443f9b1b63735733de11c1497e8a21a8eabdc7d5c2a05b7f41a3", kill_on_drop: false }` [INFO] [stdout] cef47e0dd943443f9b1b63735733de11c1497e8a21a8eabdc7d5c2a05b7f41a3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0da0f88ee127e8e810c9e4131b245f138168d0be418c1a76f5973d3ae6965414 [INFO] running `Command { std: "docker" "start" "-a" "0da0f88ee127e8e810c9e4131b245f138168d0be418c1a76f5973d3ae6965414", kill_on_drop: false }` [INFO] [stderr] warning: `package.edition` is unspecified, defaulting to `2015` while the latest is `2024` [INFO] [stderr] Compiling phyloalifold v0.1.3 (/opt/rustwide/workdir) [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/main.rs:40:72 [INFO] [stdout] | [INFO] [stdout] 40 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` (part of `#[warn(rust_2021_compatibility)]`) on by default [INFO] [stdout] help: add a "{}" format string to `Display` the message [INFO] [stdout] | [INFO] [stdout] 40 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stdout] | +++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.50s [INFO] running `Command { std: "docker" "inspect" "0da0f88ee127e8e810c9e4131b245f138168d0be418c1a76f5973d3ae6965414", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0da0f88ee127e8e810c9e4131b245f138168d0be418c1a76f5973d3ae6965414", kill_on_drop: false }` [INFO] [stdout] 0da0f88ee127e8e810c9e4131b245f138168d0be418c1a76f5973d3ae6965414 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 5f5104b62d782425d89d520857804647b49a12fae005f51d232d6b6d76687d1c [INFO] running `Command { std: "docker" "start" "-a" "5f5104b62d782425d89d520857804647b49a12fae005f51d232d6b6d76687d1c", kill_on_drop: false }` [INFO] [stderr] warning: `package.edition` is unspecified, defaulting to `2015` while the latest is `2024` [INFO] [stderr] warning: panic message is not a string literal [INFO] [stderr] --> src/main.rs:40:72 [INFO] [stderr] | [INFO] [stderr] 40 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021 [INFO] [stderr] = note: for more information, see [INFO] [stderr] = note: for more information, see [INFO] [stderr] = note: `#[warn(non_fmt_panics)]` (part of `#[warn(rust_2021_compatibility)]`) on by default [INFO] [stderr] help: add a "{}" format string to `Display` the message [INFO] [stderr] | [INFO] [stderr] 40 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stderr] | +++++ [INFO] [stderr] [INFO] [stderr] warning: `phyloalifold` (bin "phyloalifold" test) generated 1 warning (run `cargo fix --bin "phyloalifold" -p phyloalifold --tests` to apply 1 suggestion) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.08s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/phyloalifold-13e7ceb015ecc1d5) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/phyloalifold-e657ad97e2d29d6d) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests phyloalifold [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "5f5104b62d782425d89d520857804647b49a12fae005f51d232d6b6d76687d1c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5f5104b62d782425d89d520857804647b49a12fae005f51d232d6b6d76687d1c", kill_on_drop: false }` [INFO] [stdout] 5f5104b62d782425d89d520857804647b49a12fae005f51d232d6b6d76687d1c