[INFO] fetching crate nucleaze 1.4.2... [INFO] testing nucleaze-1.4.2 against master#562dee4820c458d823175268e41601d4c060588a for pr-154210-1 [INFO] extracting crate nucleaze 1.4.2 into /workspace/builds/worker-6-tc1/source [INFO] started tweaking crates.io crate nucleaze 1.4.2 [INFO] removed 0 missing tests [INFO] finished tweaking crates.io crate nucleaze 1.4.2 [INFO] tweaked toml for crates.io crate nucleaze 1.4.2 written to /workspace/builds/worker-6-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate nucleaze 1.4.2 on toolchain 562dee4820c458d823175268e41601d4c060588a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate nucleaze 1.4.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded crossbeam v0.8.4 [INFO] [stderr] Downloaded windows-targets v0.53.4 [INFO] [stderr] Downloaded cc v1.2.40 [INFO] [stderr] Downloaded rlimit v0.10.2 [INFO] [stderr] Downloaded assert_cmd v2.1.2 [INFO] [stderr] Downloaded bzip2 v0.4.4 [INFO] [stderr] Downloaded liblzma v0.3.6 [INFO] [stderr] Downloaded flate2 v1.1.2 [INFO] [stderr] Downloaded ntapi v0.4.1 [INFO] [stderr] Downloaded buffer-redux v1.0.2 [INFO] [stderr] Downloaded find-msvc-tools v0.1.3 [INFO] [stderr] Downloaded objc2-core-foundation v0.3.2 [INFO] [stderr] Downloaded objc2-io-kit v0.3.2 [INFO] [stderr] Downloaded sysinfo v0.38.0 [INFO] [stderr] Downloaded needletail v0.6.3 [INFO] [stderr] Downloaded bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Downloaded liblzma-sys v0.3.13 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 6b5688882fe4ce2156a1f7137c2ac8ac43d7d4fb22e6470c467a471f057edf49 [INFO] running `Command { std: "docker" "start" "-a" "6b5688882fe4ce2156a1f7137c2ac8ac43d7d4fb22e6470c467a471f057edf49", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6b5688882fe4ce2156a1f7137c2ac8ac43d7d4fb22e6470c467a471f057edf49", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6b5688882fe4ce2156a1f7137c2ac8ac43d7d4fb22e6470c467a471f057edf49", kill_on_drop: false }` [INFO] [stdout] 6b5688882fe4ce2156a1f7137c2ac8ac43d7d4fb22e6470c467a471f057edf49 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] aa978e94b52a9940623d08623c39ea9b0d85818165c7cdbd9c124237458de56e [INFO] running `Command { std: "docker" "start" "-a" "aa978e94b52a9940623d08623c39ea9b0d85818165c7cdbd9c124237458de56e", kill_on_drop: false }` [INFO] [stderr] Compiling jobserver v0.1.34 [INFO] [stderr] Compiling find-msvc-tools v0.1.3 [INFO] [stderr] Compiling cfg-if v1.0.3 [INFO] [stderr] Compiling proc-macro2 v1.0.101 [INFO] [stderr] Compiling getrandom v0.3.3 [INFO] [stderr] Compiling regex-syntax v0.8.6 [INFO] [stderr] Compiling anstyle v1.0.13 [INFO] [stderr] Compiling unicode-ident v1.0.19 [INFO] [stderr] Compiling zerocopy v0.8.27 [INFO] [stderr] Compiling quote v1.0.41 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling zstd-safe v7.2.4 [INFO] [stderr] Compiling anstyle-parse v0.2.7 [INFO] [stderr] Compiling adler2 v2.0.1 [INFO] [stderr] Compiling rustix v1.1.3 [INFO] [stderr] Compiling colorchoice v1.0.4 [INFO] [stderr] Compiling predicates-core v1.0.9 [INFO] [stderr] Compiling anstyle-query v1.1.4 [INFO] [stderr] Compiling rayon-core v1.13.0 [INFO] [stderr] Compiling miniz_oxide v0.8.9 [INFO] [stderr] Compiling crc32fast v1.5.0 [INFO] [stderr] Compiling bitflags v2.9.4 [INFO] [stderr] Compiling rlimit v0.10.2 [INFO] [stderr] Compiling clap_lex v0.7.5 [INFO] [stderr] Compiling assert_cmd v2.1.2 [INFO] [stderr] Compiling termtree v0.5.1 [INFO] [stderr] Compiling linux-raw-sys v0.11.0 [INFO] [stderr] Compiling crossbeam-channel v0.5.15 [INFO] [stderr] Compiling crossbeam-queue v0.3.12 [INFO] [stderr] Compiling cc v1.2.40 [INFO] [stderr] Compiling rand_core v0.9.3 [INFO] [stderr] Compiling predicates-tree v1.0.12 [INFO] [stderr] Compiling buffer-redux v1.0.2 [INFO] [stderr] Compiling anstream v0.6.21 [INFO] [stderr] Compiling wait-timeout v0.2.1 [INFO] [stderr] Compiling bytecount v0.6.9 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling flate2 v1.1.2 [INFO] [stderr] Compiling sysinfo v0.38.0 [INFO] [stderr] Compiling num_cpus v1.17.0 [INFO] [stderr] Compiling clap_builder v4.5.54 [INFO] [stderr] Compiling float-cmp v0.10.0 [INFO] [stderr] Compiling crossbeam v0.8.4 [INFO] [stderr] Compiling rayon v1.11.0 [INFO] [stderr] Compiling syn v2.0.106 [INFO] [stderr] Compiling zstd-sys v2.0.16+zstd.1.5.7 [INFO] [stderr] Compiling liblzma-sys v0.3.13 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling regex-automata v0.4.11 [INFO] [stderr] Compiling ppv-lite86 v0.2.21 [INFO] [stderr] Compiling bzip2 v0.4.4 [INFO] [stderr] Compiling rand_chacha v0.9.0 [INFO] [stderr] Compiling tempfile v3.24.0 [INFO] [stderr] Compiling rand v0.9.2 [INFO] [stderr] Compiling liblzma v0.3.6 [INFO] [stderr] Compiling regex v1.11.3 [INFO] [stderr] Compiling bstr v1.12.1 [INFO] [stderr] Compiling predicates v3.1.3 [INFO] [stderr] Compiling clap_derive v4.5.49 [INFO] [stderr] Compiling clap v4.5.54 [INFO] [stderr] Compiling zstd v0.13.3 [INFO] [stderr] Compiling needletail v0.6.3 [INFO] [stderr] Compiling nucleaze v1.4.2 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 25.84s [INFO] running `Command { std: "docker" "inspect" "aa978e94b52a9940623d08623c39ea9b0d85818165c7cdbd9c124237458de56e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "aa978e94b52a9940623d08623c39ea9b0d85818165c7cdbd9c124237458de56e", kill_on_drop: false }` [INFO] [stdout] aa978e94b52a9940623d08623c39ea9b0d85818165c7cdbd9c124237458de56e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 08d372a55ff2a842eb1269a50efa77dfcfdeaf9e36f2fa299dc019b6aa644b14 [INFO] running `Command { std: "docker" "start" "-a" "08d372a55ff2a842eb1269a50efa77dfcfdeaf9e36f2fa299dc019b6aa644b14", kill_on_drop: false }` [INFO] [stderr] Compiling nucleaze v1.4.2 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.85s [INFO] running `Command { std: "docker" "inspect" "08d372a55ff2a842eb1269a50efa77dfcfdeaf9e36f2fa299dc019b6aa644b14", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "08d372a55ff2a842eb1269a50efa77dfcfdeaf9e36f2fa299dc019b6aa644b14", kill_on_drop: false }` [INFO] [stdout] 08d372a55ff2a842eb1269a50efa77dfcfdeaf9e36f2fa299dc019b6aa644b14 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] b5d57bb1b278a16eaa75e3afb5d7cafce66418df4c687b50a2561db39ed3378d [INFO] running `Command { std: "docker" "start" "-a" "b5d57bb1b278a16eaa75e3afb5d7cafce66418df4c687b50a2561db39ed3378d", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.11s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/nucleaze-8bd93006fba25dc2) [INFO] [stdout] [INFO] [stdout] running 33 tests [INFO] [stdout] test kmer_ops::tests::test_canonical_encoding_behavior ... ok [INFO] [stdout] test kmer_ops::tests::test_bit_cap_calculation ... ok [INFO] [stdout] test kmer_ops::tests::test_empty_reference_set ... ok [INFO] [stdout] test kmer_ops::tests::test_encode_multiple_bases ... ok [INFO] [stdout] test kmer_ops::tests::test_encoding_consistency ... ok [INFO] [stdout] test kmer_ops::tests::test_kmer_processor_diff_vars ... ok [INFO] [stdout] test kmer_ops::tests::test_encoding_bit_length ... ok [INFO] [stdout] test kmer_ops::tests::test_kmer_processor_normal_vars ... ok [INFO] [stdout] test kmer_ops::tests::test_encode_longer_sequence ... ok [INFO] [stdout] test kmer_ops::tests::test_encode_single_base ... ok [INFO] [stdout] test kmer_ops::tests::test_palindromic_sequences ... ok [INFO] [stdout] test kmer_ops::tests::test_process_read_too_short ... ok [INFO] [stdout] test kmer_ops::tests::test_large_reference_set ... ok [INFO] [stdout] test kmer_ops::tests::test_process_read_no_match ... ok [INFO] [stdout] test kmer_ops::tests::test_single_sequence ... ok [INFO] [stdout] test kmer_ops::tests::test_sequence_length_k_plus_one ... ok [INFO] [stdout] test kmer_ops::tests::test_kmer_rolling_hash ... ok [INFO] [stdout] test kmer_ops::tests::test_threshold_one ... ok [INFO] [stdout] test kmer_ops::tests::test_canonical ... ok [INFO] [stdout] test kmer_ops::tests::test_threshold_higher ... ok [INFO] [stdout] test kmer_ops::tests::test_process_multiple ... ok [INFO] [stdout] test kmer_ops::tests::test_rc_refs ... ok [INFO] [stdout] test kmer_ops::tests::test_sequence_length_k ... ok [INFO] [stdout] test kmer_ops::tests::test_minimum_k_value ... ok [INFO] [stdout] test kmer_ops::tests::test_repeated_bases ... ok [INFO] [stdout] test kmer_ops::tests::test_sequence_exactly_k_length ... ok [INFO] [stdout] test kmer_ops::tests::test_process_read_partial_match_below_threshold ... ok [INFO] [stdout] test kmer_ops::tests::test_process_read_exact_match ... ok [INFO] [stdout] test kmer_ops::tests::test_process_read_meets_threshold ... ok [INFO] [stdout] test kmer_ops::tests::test_duplicate_kmers ... ok [INFO] [stdout] test kmer_ops::tests::test_various_thresholds ... ok [INFO] [stdout] test kmer_ops::tests::test_long_sequence_processing ... ok [INFO] [stdout] test kmer_ops::tests::test_multiple_k ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 33 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/nucleaze-ee9f0df2d85af036) [INFO] [stdout] [INFO] [stdout] running 33 tests [INFO] [stdout] test kmer_ops::tests::test_canonical_encoding_behavior ... ok [INFO] [stdout] test kmer_ops::tests::test_bit_cap_calculation ... ok [INFO] [stdout] test kmer_ops::tests::test_empty_reference_set ... ok [INFO] [stdout] test kmer_ops::tests::test_encode_longer_sequence ... ok [INFO] [stdout] test kmer_ops::tests::test_encode_multiple_bases ... ok [INFO] [stdout] test kmer_ops::tests::test_encode_single_base ... ok [INFO] [stdout] test kmer_ops::tests::test_encoding_consistency ... ok [INFO] [stdout] test kmer_ops::tests::test_encoding_bit_length ... ok [INFO] [stdout] test kmer_ops::tests::test_kmer_processor_normal_vars ... ok [INFO] [stdout] test kmer_ops::tests::test_kmer_processor_diff_vars ... ok [INFO] [stdout] test kmer_ops::tests::test_palindromic_sequences ... ok [INFO] [stdout] test kmer_ops::tests::test_process_read_too_short ... ok [INFO] [stdout] test kmer_ops::tests::test_sequence_length_k ... ok [INFO] [stdout] test kmer_ops::tests::test_minimum_k_value ... ok [INFO] [stdout] test kmer_ops::tests::test_sequence_length_k_plus_one ... ok [INFO] [stdout] test kmer_ops::tests::test_threshold_higher ... ok [INFO] [stdout] test kmer_ops::tests::test_sequence_exactly_k_length ... ok [INFO] [stdout] test kmer_ops::tests::test_single_sequence ... ok [INFO] [stdout] test kmer_ops::tests::test_process_read_meets_threshold ... ok [INFO] [stdout] test kmer_ops::tests::test_repeated_bases ... ok [INFO] [stdout] test kmer_ops::tests::test_process_read_no_match ... ok [INFO] [stdout] test kmer_ops::tests::test_threshold_one ... ok [INFO] [stdout] test kmer_ops::tests::test_long_sequence_processing ... ok [INFO] [stdout] test kmer_ops::tests::test_process_multiple ... ok [INFO] [stdout] test kmer_ops::tests::test_duplicate_kmers ... ok [INFO] [stdout] test kmer_ops::tests::test_process_read_partial_match_below_threshold ... ok [INFO] [stdout] test kmer_ops::tests::test_kmer_rolling_hash ... ok [INFO] [stdout] test kmer_ops::tests::test_process_read_exact_match ... ok [INFO] [stdout] test kmer_ops::tests::test_rc_refs ... ok [INFO] [stdout] test kmer_ops::tests::test_canonical ... ok [INFO] [stdout] test kmer_ops::tests::test_various_thresholds ... ok [INFO] [stdout] test kmer_ops::tests::test_large_reference_set ... ok [INFO] [stdout] test kmer_ops::tests::test_multiple_k ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 33 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s [INFO] [stdout] [INFO] [stderr] Running tests/integrations.rs (/opt/rustwide/target/debug/deps/integrations-5307c6128dae7c5d) [INFO] [stdout] [INFO] [stdout] running 23 tests [INFO] [stdout] test test_missing_required_args ... ok [INFO] [stdout] test test_duplicate_file_args_error ... ok [INFO] [stdout] test test_duplicate_read_files ... ok [INFO] [stdout] test test_basic_filtering_unpaired ... ok [INFO] [stdout] test test_missing_interleaved_flag_failure ... ok [INFO] [stdout] test test_interleaved ... ok [INFO] [stdout] test test_filtering_ambiguous_sequences ... ok [INFO] [stdout] test test_paired_in_inter_out ... ok [INFO] [stdout] test test_interleaved_input_separate_output ... ok [INFO] [stdout] test test_ref_with_short_seqs_errors ... ok [INFO] [stdout] test test_fasta_output_format ... ok [INFO] [stdout] test test_paired_input_files ... ok [INFO] [stdout] test test_inter_in_paired_out ... ok [INFO] [stdout] test test_threads_argument ... ok [INFO] [stdout] test test_memory_allocation_limits ... ok [INFO] [stdout] test test_minhits_threshold ... ok [INFO] [stdout] test test_inter_in_paired_out_no_flag ... ok [INFO] [stdout] test test_stdin_input ... ok [INFO] [stdout] test test_canonical_kmers ... ok [INFO] [stdout] test test_serialized_reference ... ok [INFO] [stdout] test test_serialized_reference_persistence ... ok [INFO] [stdout] test test_different_k_values ... ok [INFO] [stdout] test test_metadata_kmer_functional ... ok [INFO] [stderr] Doc-tests nucleaze [INFO] [stdout] [INFO] [stdout] test result: ok. 23 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.19s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "b5d57bb1b278a16eaa75e3afb5d7cafce66418df4c687b50a2561db39ed3378d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b5d57bb1b278a16eaa75e3afb5d7cafce66418df4c687b50a2561db39ed3378d", kill_on_drop: false }` [INFO] [stdout] b5d57bb1b278a16eaa75e3afb5d7cafce66418df4c687b50a2561db39ed3378d