[INFO] fetching crate librna-sys 0.3.1... [INFO] testing librna-sys-0.3.1 against master#562dee4820c458d823175268e41601d4c060588a for pr-154210-1 [INFO] extracting crate librna-sys 0.3.1 into /workspace/builds/worker-2-tc1/source [INFO] started tweaking crates.io crate librna-sys 0.3.1 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate librna-sys 0.3.1 [INFO] tweaked toml for crates.io crate librna-sys 0.3.1 written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate librna-sys 0.3.1 on toolchain 562dee4820c458d823175268e41601d4c060588a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate librna-sys 0.3.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded clang-sys v1.3.1 [INFO] [stderr] Downloaded prettyplease v0.2.22 [INFO] [stderr] Downloaded portable-atomic v1.7.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 701c1a0e566b71c2f52287c8782e1d76b5e5d7890e31c9a9b278f839741b7c63 [INFO] running `Command { std: "docker" "start" "-a" "701c1a0e566b71c2f52287c8782e1d76b5e5d7890e31c9a9b278f839741b7c63", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "701c1a0e566b71c2f52287c8782e1d76b5e5d7890e31c9a9b278f839741b7c63", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "701c1a0e566b71c2f52287c8782e1d76b5e5d7890e31c9a9b278f839741b7c63", kill_on_drop: false }` [INFO] [stdout] 701c1a0e566b71c2f52287c8782e1d76b5e5d7890e31c9a9b278f839741b7c63 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] b5a926d47de6d6bbf171d9c331954c883d28ae5c209bb1d4910b44ff3ed2aa11 [INFO] running `Command { std: "docker" "start" "-a" "b5a926d47de6d6bbf171d9c331954c883d28ae5c209bb1d4910b44ff3ed2aa11", kill_on_drop: false }` [INFO] [stderr] Compiling unicode-ident v1.0.6 [INFO] [stderr] Compiling memchr v2.5.0 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling prettyplease v0.2.22 [INFO] [stderr] Compiling libc v0.2.158 [INFO] [stderr] Compiling log v0.4.17 [INFO] [stderr] Compiling bindgen v0.72.1 [INFO] [stderr] Compiling libloading v0.7.3 [INFO] [stderr] Compiling proc-macro2 v1.0.86 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling rustc-hash v2.1.1 [INFO] [stderr] Compiling bitflags v2.6.0 [INFO] [stderr] Compiling shlex v1.1.0 [INFO] [stderr] Compiling clang-sys v1.3.1 [INFO] [stderr] Compiling itertools v0.13.0 [INFO] [stderr] Compiling quote v1.0.37 [INFO] [stderr] Compiling syn v2.0.77 [INFO] [stderr] Compiling nom v7.1.1 [INFO] [stderr] Compiling regex v1.5.5 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling librna-sys v0.3.1 (/opt/rustwide/workdir) [INFO] [stderr] warning: librna-sys@0.3.1: pkg_config failed ( [INFO] [stderr] warning: librna-sys@0.3.1: Consider setting LIBRNA_INCLUDE_DIR/LIBRNA_LIB_DIR instead. [INFO] [stderr] warning: librna-sys@0.3.1: environment variable not found. Using default LIBRNA_INCLUDE_DIR=/usr/include [INFO] [stderr] warning: librna-sys@0.3.1: environment variable not found. Using default LIBRNA_LIB_DIR=/usr/lib [INFO] [stderr] warning: librna-sys@0.3.1: libRNA.a not found! [INFO] [stderr] warning: librna-sys@0.3.1: Fallback mode for local builds is not yet implemented. [INFO] [stderr] error: failed to run custom build command for `librna-sys v0.3.1 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/librna-sys-b35a0af62ad73d80/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rerun-if-changed=src/wrapper.h [INFO] [stderr] cargo:rerun-if-env-changed=LIBRNA_LIB_DIR [INFO] [stderr] cargo:rerun-if-env-changed=LIBRNA_INCLUDE_DIR [INFO] [stderr] cargo:rerun-if-env-changed=RNALIB2_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:warning=pkg_config failed ( [INFO] [stderr] pkg-config exited with status code 1 [INFO] [stderr] > PKG_CONFIG_ALLOW_SYSTEM_LIBS=1 PKG_CONFIG_ALLOW_SYSTEM_CFLAGS=1 pkg-config --static --libs --cflags RNAlib2 RNAlib2 >= 2.5.0 [INFO] [stderr] [INFO] [stderr] The system library `RNAlib2` required by crate `librna-sys` was not found. [INFO] [stderr] The file `RNAlib2.pc` needs to be installed and the PKG_CONFIG_PATH environment variable must contain its parent directory. [INFO] [stderr] The PKG_CONFIG_PATH environment variable is not set. [INFO] [stderr] [INFO] [stderr] HINT: if you have installed the library, try setting PKG_CONFIG_PATH to the directory containing `RNAlib2.pc`. [INFO] [stderr] ). [INFO] [stderr] cargo:warning=Consider setting LIBRNA_INCLUDE_DIR/LIBRNA_LIB_DIR instead. [INFO] [stderr] cargo:warning=environment variable not found. Using default LIBRNA_INCLUDE_DIR=/usr/include [INFO] [stderr] cargo:warning=environment variable not found. Using default LIBRNA_LIB_DIR=/usr/lib [INFO] [stderr] cargo:warning=libRNA.a not found! [INFO] [stderr] cargo:warning=Fallback mode for local builds is not yet implemented. [INFO] [stderr] cargo:rustc-link-lib=static=RNA [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] cargo:rustc-link-lib=gsl [INFO] [stderr] cargo:rustc-link-lib=mpfr [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=gmp [INFO] [stderr] cargo:include=/usr/include [INFO] [stderr] cargo:include=/usr/include/ViennaRNA [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] src/wrapper.h:9:10: fatal error: 'ViennaRNA/2Dfold.h' file not found [INFO] [stderr] [INFO] [stderr] thread 'main' (441) panicked at src/build.rs:97:10: [INFO] [stderr] Unable to generate bindings: ClangDiagnostic("src/wrapper.h:9:10: fatal error: 'ViennaRNA/2Dfold.h' file not found\n") [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x6008c4ad287a - std[31e582c13f4e914f]::backtrace_rs::backtrace::libunwind::trace [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x6008c4ad287a - std[31e582c13f4e914f]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x6008c4ad287a - std[31e582c13f4e914f]::sys::backtrace::_print_fmt [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/backtrace.rs:74:9 [INFO] [stderr] 3: 0x6008c4ad287a - <::print::DisplayBacktrace as core[fa0eadad68403074]::fmt::Display>::fmt [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/backtrace.rs:44:26 [INFO] [stderr] 4: 0x6008c4ae814a - ::fmt [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/fmt/rt.rs:152:76 [INFO] [stderr] 5: 0x6008c4ae814a - core[fa0eadad68403074]::fmt::write [INFO] [stderr] 6: 0x6008c4ad7842 - std[31e582c13f4e914f]::io::default_write_fmt:: [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x6008c4ad7842 - ::write_fmt [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/io/mod.rs:1994:13 [INFO] [stderr] 8: 0x6008c4ab37cf - ::print [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/backtrace.rs:47:9 [INFO] [stderr] 9: 0x6008c4ab37cf - std[31e582c13f4e914f]::panicking::default_hook::{closure#0} [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:292:27 [INFO] [stderr] 10: 0x6008c4accff1 - std[31e582c13f4e914f]::panicking::default_hook [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:319:9 [INFO] [stderr] 11: 0x6008c4acd26b - std[31e582c13f4e914f]::panicking::panic_with_hook [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:825:13 [INFO] [stderr] 12: 0x6008c4ab3888 - std[31e582c13f4e914f]::panicking::panic_handler::{closure#0} [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:698:13 [INFO] [stderr] 13: 0x6008c4aa88f9 - std[31e582c13f4e914f]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/backtrace.rs:182:18 [INFO] [stderr] 14: 0x6008c4ab41ed - __rustc[fc8e3a9f23f26cb]::rust_begin_unwind [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:689:5 [INFO] [stderr] 15: 0x6008c4ae898c - core[fa0eadad68403074]::panicking::panic_fmt [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/panicking.rs:80:14 [INFO] [stderr] 16: 0x6008c4ae8702 - core[fa0eadad68403074]::result::unwrap_failed [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/result.rs:1867:5 [INFO] [stderr] 17: 0x6008c45b63bb - >::expect [INFO] [stderr] 18: 0x6008c45b5fba - build_script_build[9ddec21d63e7f0c9]::main [INFO] [stderr] 19: 0x6008c45b3d33 - >::call_once [INFO] [stderr] 20: 0x6008c45b44f6 - std[31e582c13f4e914f]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stderr] 21: 0x6008c45b1ef9 - std[31e582c13f4e914f]::rt::lang_start::<()>::{closure#0} [INFO] [stderr] 22: 0x6008c4acc054 - <&dyn core[fa0eadad68403074]::ops::function::Fn<(), Output = i32> + core[fa0eadad68403074]::marker::Sync + core[fa0eadad68403074]::panic::unwind_safe::RefUnwindSafe as core[fa0eadad68403074]::ops::function::FnOnce<()>>::call_once [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/ops/function.rs:287:21 [INFO] [stderr] 23: 0x6008c4acc054 - std[31e582c13f4e914f]::panicking::catch_unwind::do_call::<&dyn core[fa0eadad68403074]::ops::function::Fn<(), Output = i32> + core[fa0eadad68403074]::marker::Sync + core[fa0eadad68403074]::panic::unwind_safe::RefUnwindSafe, i32> [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:581:40 [INFO] [stderr] 24: 0x6008c4acc054 - std[31e582c13f4e914f]::panicking::catch_unwind:: + core[fa0eadad68403074]::marker::Sync + core[fa0eadad68403074]::panic::unwind_safe::RefUnwindSafe> [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:544:19 [INFO] [stderr] 25: 0x6008c4acc054 - std[31e582c13f4e914f]::panic::catch_unwind::<&dyn core[fa0eadad68403074]::ops::function::Fn<(), Output = i32> + core[fa0eadad68403074]::marker::Sync + core[fa0eadad68403074]::panic::unwind_safe::RefUnwindSafe, i32> [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panic.rs:359:14 [INFO] [stderr] 26: 0x6008c4acc054 - std[31e582c13f4e914f]::rt::lang_start_internal::{closure#0} [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/rt.rs:175:24 [INFO] [stderr] 27: 0x6008c4acc054 - std[31e582c13f4e914f]::panicking::catch_unwind::do_call:: [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:581:40 [INFO] [stderr] 28: 0x6008c4acc054 - std[31e582c13f4e914f]::panicking::catch_unwind:: [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:544:19 [INFO] [stderr] 29: 0x6008c4acc054 - std[31e582c13f4e914f]::panic::catch_unwind:: [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panic.rs:359:14 [INFO] [stderr] 30: 0x6008c4acc054 - std[31e582c13f4e914f]::rt::lang_start_internal [INFO] [stderr] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/rt.rs:171:5 [INFO] [stderr] 31: 0x6008c45b1921 - std[31e582c13f4e914f]::rt::lang_start::<()> [INFO] [stderr] 32: 0x6008c45b75b5 - main [INFO] [stderr] 33: 0x700d7a7951ca - [INFO] [stderr] 34: 0x700d7a79528b - __libc_start_main [INFO] [stderr] 35: 0x6008c45b0675 - _start [INFO] [stderr] 36: 0x0 - [INFO] running `Command { std: "docker" "inspect" "b5a926d47de6d6bbf171d9c331954c883d28ae5c209bb1d4910b44ff3ed2aa11", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b5a926d47de6d6bbf171d9c331954c883d28ae5c209bb1d4910b44ff3ed2aa11", kill_on_drop: false }` [INFO] [stdout] b5a926d47de6d6bbf171d9c331954c883d28ae5c209bb1d4910b44ff3ed2aa11