[INFO] fetching crate lib_ts_chainalign 1.0.1... [INFO] testing lib_ts_chainalign-1.0.1 against master#562dee4820c458d823175268e41601d4c060588a for pr-154210-1 [INFO] extracting crate lib_ts_chainalign 1.0.1 into /workspace/builds/worker-4-tc1/source [INFO] started tweaking crates.io crate lib_ts_chainalign 1.0.1 [INFO] finished tweaking crates.io crate lib_ts_chainalign 1.0.1 [INFO] tweaked toml for crates.io crate lib_ts_chainalign 1.0.1 written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate lib_ts_chainalign 1.0.1 on toolchain 562dee4820c458d823175268e41601d4c060588a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate lib_ts_chainalign 1.0.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded traitsequence v8.1.2 [INFO] [stderr] Downloaded generic_a_star v1.0.1 [INFO] [stderr] Downloaded seed_chain v1.0.1 [INFO] [stderr] Downloaded template-switch-error-free-inners v0.1.1 [INFO] [stderr] Downloaded compact-genome v12.5.0 [INFO] [stderr] Downloaded compare v0.1.0 [INFO] [stderr] Downloaded noisy_float v0.2.1 [INFO] [stderr] Downloaded clap_derive v4.6.0 [INFO] [stderr] Downloaded suffix v1.3.0 [INFO] [stderr] Downloaded lib_tsalign v1.0.1 [INFO] [stderr] Downloaded indicatif v0.18.4 [INFO] [stderr] Downloaded console v0.16.3 [INFO] [stderr] Downloaded ndarray v0.17.2 [INFO] [stderr] Downloaded binary-heap-plus v0.5.0 [INFO] [stderr] Downloaded extend_map v0.14.4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 2a50ba546cf06982eed431fc41b5ab6ac4afb0e9ae2d8b7caa041b417624a9e7 [INFO] running `Command { std: "docker" "start" "-a" "2a50ba546cf06982eed431fc41b5ab6ac4afb0e9ae2d8b7caa041b417624a9e7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "2a50ba546cf06982eed431fc41b5ab6ac4afb0e9ae2d8b7caa041b417624a9e7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2a50ba546cf06982eed431fc41b5ab6ac4afb0e9ae2d8b7caa041b417624a9e7", kill_on_drop: false }` [INFO] [stdout] 2a50ba546cf06982eed431fc41b5ab6ac4afb0e9ae2d8b7caa041b417624a9e7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f0d7f3082bcdcbc3159764430d92e43a138e02245daec22d0e13a23f1ea74724 [INFO] running `Command { std: "docker" "start" "-a" "f0d7f3082bcdcbc3159764430d92e43a138e02245daec22d0e13a23f1ea74724", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.183 [INFO] [stderr] Compiling compare v0.1.0 [INFO] [stderr] Compiling itertools v0.14.0 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling traitsequence v8.1.2 [INFO] [stderr] Compiling anstyle-parse v1.0.0 [INFO] [stderr] Compiling anstyle v1.0.14 [INFO] [stderr] Compiling rustc-hash v2.1.1 [INFO] [stderr] Compiling portable-atomic v1.13.1 [INFO] [stderr] Compiling colorchoice v1.0.5 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling syn v2.0.117 [INFO] [stderr] Compiling bitvec v1.0.1 [INFO] [stderr] Compiling extend_map v0.14.4 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling binary-heap-plus v0.5.0 [INFO] [stderr] Compiling clap_lex v1.1.0 [INFO] [stderr] Compiling virtue v0.0.18 [INFO] [stderr] Compiling suffix v1.3.0 [INFO] [stderr] Compiling nom v8.0.0 [INFO] [stderr] Compiling noisy_float v0.2.1 [INFO] [stderr] Compiling unty v0.0.4 [INFO] [stderr] Compiling unit-prefix v0.5.2 [INFO] [stderr] Compiling anstream v1.0.0 [INFO] [stderr] Compiling generic_a_star v1.0.1 [INFO] [stderr] Compiling clap_builder v4.6.0 [INFO] [stderr] Compiling bincode_derive v2.0.1 [INFO] [stderr] Compiling console v0.16.3 [INFO] [stderr] Compiling indicatif v0.18.4 [INFO] [stderr] Compiling ref-cast-impl v1.0.25 [INFO] [stderr] Compiling thiserror-impl v2.0.18 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling clap_derive v4.6.0 [INFO] [stderr] Compiling ref-cast v1.0.25 [INFO] [stderr] Compiling thiserror v2.0.18 [INFO] [stderr] Compiling compact-genome v12.5.0 [INFO] [stderr] Compiling clap v4.6.0 [INFO] [stderr] Compiling seed_chain v1.0.1 [INFO] [stderr] Compiling template-switch-error-free-inners v0.1.1 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling ndarray v0.17.2 [INFO] [stderr] Compiling bincode v2.0.1 [INFO] [stderr] Compiling lib_tsalign v1.0.1 [INFO] [stderr] Compiling lib_ts_chainalign v1.0.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 29.79s [INFO] running `Command { std: "docker" "inspect" "f0d7f3082bcdcbc3159764430d92e43a138e02245daec22d0e13a23f1ea74724", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f0d7f3082bcdcbc3159764430d92e43a138e02245daec22d0e13a23f1ea74724", kill_on_drop: false }` [INFO] [stdout] f0d7f3082bcdcbc3159764430d92e43a138e02245daec22d0e13a23f1ea74724 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f21220b349eb320c2129438e4dbb26e5d3b342453b69a048d32c75f19b749b14 [INFO] running `Command { std: "docker" "start" "-a" "f21220b349eb320c2129438e4dbb26e5d3b342453b69a048d32c75f19b749b14", kill_on_drop: false }` [INFO] [stderr] Compiling lib_ts_chainalign v1.0.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 4.00s [INFO] running `Command { std: "docker" "inspect" "f21220b349eb320c2129438e4dbb26e5d3b342453b69a048d32c75f19b749b14", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f21220b349eb320c2129438e4dbb26e5d3b342453b69a048d32c75f19b749b14", kill_on_drop: false }` [INFO] [stdout] f21220b349eb320c2129438e4dbb26e5d3b342453b69a048d32c75f19b749b14 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] df1a642aee34a2d4a8b7d17e81d58347a2a9d48d239bb4d3f7a4d5a0feff48e6 [INFO] running `Command { std: "docker" "start" "-a" "df1a642aee34a2d4a8b7d17e81d58347a2a9d48d239bb4d3f7a4d5a0feff48e6", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.11s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/lib_ts_chainalign-340ef7a4c5cb2419) [INFO] [stdout] [INFO] [stdout] running 62 tests [INFO] [stdout] test anchors::tests::test_coordinates_rev ... ok [INFO] [stdout] test anchors::tests::test_coordinates ... ok [INFO] [stdout] test chaining_lower_bounds::gap_affine::tests::test_max_match_run_1 ... ok [INFO] [stdout] test chaining_lower_bounds::gap_affine::tests::test_max_match_run_0 ... ok [INFO] [stdout] test chaining_lower_bounds::gap_affine::tests::test_max_match_run_0_allow_all_matches ... ok [INFO] [stdout] test chaining_lower_bounds::ts_jump::tests::test_max_match_run_0 ... ok [INFO] [stdout] test chaining_lower_bounds::gap_affine::tests::test_max_match_run_1_allow_all_matches ... ok [INFO] [stdout] test exact_chaining::gap_affine::tests::test_anchor_anchor_direct_primary ... ok [INFO] [stdout] test exact_chaining::gap_affine::tests::test_anchor_anchor_direct_secondary ... ok [INFO] [stdout] test chaining_lower_bounds::gap_affine::tests::test_max_match_run_2 ... ok [INFO] [stdout] test chaining_lower_bounds::ts_jump::tests::test_max_match_run_2 ... ok [INFO] [stdout] test exact_chaining::gap_affine::tests::test_anchor_anchor_indirect_primary ... ok [INFO] [stdout] test exact_chaining::gap_affine::tests::test_anchor_end_direct ... ok [INFO] [stdout] test exact_chaining::gap_affine::tests::test_anchor_end_indirect ... ok [INFO] [stdout] test chaining_lower_bounds::gap_affine::tests::test_max_match_run_2_allow_all_matches ... ok [INFO] [stdout] test exact_chaining::gap_affine::tests::test_gap_directions ... ok [INFO] [stdout] test exact_chaining::gap_affine::tests::test_extremity_gaps ... ok [INFO] [stdout] test exact_chaining::gap_affine::tests::test_extremity_substitutions ... ok [INFO] [stdout] test exact_chaining::gap_affine::tests::test_anchor_anchor_indirect_secondary ... ok [INFO] [stdout] test exact_chaining::gap_affine::tests::test_max_match_run_1 ... ok [INFO] [stdout] test exact_chaining::gap_affine::tests::test_partial_alignment ... ok [INFO] [stdout] test exact_chaining::gap_affine::tests::test_max_match_run_2 ... ok [INFO] [stdout] test exact_chaining::gap_affine::tests::test_secondary_12 ... ok [INFO] [stdout] test exact_chaining::gap_affine::tests::test_secondary_21 ... ok [INFO] [stdout] test exact_chaining::gap_affine::tests::test_start_anchor_direct ... ok [INFO] [stdout] test exact_chaining::gap_affine::tests::test_start_end ... ok [INFO] [stdout] test exact_chaining::gap_affine::tests::test_start_end_direct ... ok [INFO] [stdout] test exact_chaining::gap_affine::tests::test_start_end_indirect_lt_k ... ok [INFO] [stdout] test exact_chaining::gap_affine::tests::test_start_anchor_indirect ... ok [INFO] [stdout] test exact_chaining::gap_affine::tests::test_start_end_indirect_geq_k ... ok [INFO] [stdout] test exact_chaining::gap_affine::tests::test_substitutions_as_gaps ... ok [INFO] [stdout] test exact_chaining::ts_12_jump::tests::test_max_match_run_0 ... ok [INFO] [stdout] test exact_chaining::ts_12_jump::tests::test_max_match_run_2 ... ok [INFO] [stdout] test exact_chaining::gap_affine::tests::test_max_match_run_0 ... ok [INFO] [stdout] test exact_chaining::ts_12_jump::tests::test_gap_directions ... ok [INFO] [stdout] test exact_chaining::ts_12_jump::tests::test_only_jump_start ... ok [INFO] [stdout] test exact_chaining::ts_12_jump::tests::test_partial_alignment ... ok [INFO] [stdout] test exact_chaining::ts_12_jump::tests::test_start_end ... ok [INFO] [stdout] test exact_chaining::ts_12_jump::tests::test_max_match_run_1 ... ok [INFO] [stdout] test chaining_cost_function::tests::test_anchor_anchor_indirect_primary ... ok [INFO] [stdout] test chaining_cost_function::tests::test_anchor_end_direct ... ok [INFO] [stdout] test chaining_cost_function::tests::test_anchor_anchor_direct_primary ... ok [INFO] [stdout] test chaining_lower_bounds::ts_jump::tests::test_max_match_run_1 ... ok [INFO] [stdout] test chaining_cost_function::tests::test_start_end_indirect_geq_k ... ok [INFO] [stdout] test exact_chaining::ts_12_jump::tests::test_only_jump ... ok [INFO] [stdout] test exact_chaining::ts_34_jump::tests::test_gap_directions ... ok [INFO] [stdout] test chaining_cost_function::tests::test_anchor_anchor_indirect_secondary ... ok [INFO] [stdout] test chaining_cost_function::tests::test_start_anchor_indirect ... ok [INFO] [stdout] test chaining_cost_function::tests::test_start_end_direct ... ok [INFO] [stdout] test exact_chaining::ts_34_jump::tests::test_only_jump_end ... ok [INFO] [stdout] test exact_chaining::ts_34_jump::tests::test_only_jump ... ok [INFO] [stdout] test exact_chaining::ts_34_jump::tests::test_max_match_run_0 ... ok [INFO] [stdout] test exact_chaining::ts_34_jump::tests::test_only_jump_start ... ok [INFO] [stdout] test exact_chaining::ts_34_jump::tests::test_partial_alignment ... ok [INFO] [stdout] test exact_chaining::ts_34_jump::tests::test_start_end ... ok [INFO] [stdout] test exact_chaining::ts_34_jump::tests::test_max_match_run_1 ... ok [INFO] [stdout] test exact_chaining::ts_34_jump::tests::test_max_match_run_2 ... ok [INFO] [stdout] test chaining_cost_function::tests::test_anchor_anchor_direct_secondary ... ok [INFO] [stdout] test exact_chaining::ts_12_jump::tests::test_only_jump_end ... ok [INFO] [stdout] test chaining_cost_function::tests::test_anchor_end_indirect ... ok [INFO] [stdout] test chaining_cost_function::tests::test_start_end_indirect_lt_k ... ok [INFO] [stdout] test chaining_cost_function::tests::test_start_anchor_direct ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 62 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.47s [INFO] [stdout] [INFO] [stderr] Doc-tests lib_ts_chainalign [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test src/alignment/ts_kind.rs - alignment::ts_kind::TsKind::index (line 49) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.09s [INFO] [stdout] [INFO] [stdout] all doctests ran in 0.83s; merged doctests compilation took 0.73s [INFO] running `Command { std: "docker" "inspect" "df1a642aee34a2d4a8b7d17e81d58347a2a9d48d239bb4d3f7a4d5a0feff48e6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "df1a642aee34a2d4a8b7d17e81d58347a2a9d48d239bb4d3f7a4d5a0feff48e6", kill_on_drop: false }` [INFO] [stdout] df1a642aee34a2d4a8b7d17e81d58347a2a9d48d239bb4d3f7a4d5a0feff48e6