[INFO] fetching crate immunum 1.0.0... [INFO] testing immunum-1.0.0 against master#562dee4820c458d823175268e41601d4c060588a for pr-154210-1 [INFO] extracting crate immunum 1.0.0 into /workspace/builds/worker-4-tc1/source [INFO] started tweaking crates.io crate immunum 1.0.0 [INFO] finished tweaking crates.io crate immunum 1.0.0 [INFO] tweaked toml for crates.io crate immunum 1.0.0 written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate immunum 1.0.0 on toolchain 562dee4820c458d823175268e41601d4c060588a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate immunum 1.0.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded recursive-proc-macro-impl v0.1.1 [INFO] [stderr] Downloaded iter-read v1.1.0 [INFO] [stderr] Downloaded pyo3-macros v0.25.1 [INFO] [stderr] Downloaded recursive v0.1.1 [INFO] [stderr] Downloaded pyo3-polars v0.24.0 [INFO] [stderr] Downloaded polars-ffi v0.51.0 [INFO] [stderr] Downloaded array-init-cursor v0.2.1 [INFO] [stderr] Downloaded inventory v0.3.22 [INFO] [stderr] Downloaded streaming-decompression v0.1.2 [INFO] [stderr] Downloaded now v0.1.3 [INFO] [stderr] Downloaded pyo3-polars-derive v0.18.0 [INFO] [stderr] Downloaded atoi_simd v0.16.1 [INFO] [stderr] Downloaded polars-error v0.51.0 [INFO] [stderr] Downloaded boxcar v0.2.14 [INFO] [stderr] Downloaded polars-mem-engine v0.51.0 [INFO] [stderr] Downloaded polars-parquet-format v0.1.0 [INFO] [stderr] Downloaded polars-expr v0.51.0 [INFO] [stderr] Downloaded polars-lazy v0.51.0 [INFO] [stderr] Downloaded polars-arrow-format v0.2.1 [INFO] [stderr] Downloaded polars v0.51.0 [INFO] [stderr] Downloaded skiplist v0.6.0 [INFO] [stderr] Downloaded polars-compute v0.51.0 [INFO] [stderr] Downloaded polars-parquet v0.51.0 [INFO] [stderr] Downloaded polars-io v0.51.0 [INFO] [stderr] Downloaded polars-ops v0.51.0 [INFO] [stderr] Downloaded polars-stream v0.51.0 [INFO] [stderr] Downloaded serde-pickle v1.2.0 [INFO] [stderr] Downloaded object_store v0.12.5 [INFO] [stderr] Downloaded polars-arrow v0.51.0 [INFO] [stderr] Downloaded pyo3-ffi v0.25.1 [INFO] [stderr] Downloaded argminmax v0.6.3 [INFO] [stderr] Downloaded polars-plan v0.51.0 [INFO] [stderr] Downloaded polars-time v0.51.0 [INFO] [stderr] Downloaded polars-core v0.51.0 [INFO] [stderr] Downloaded polars-utils v0.51.0 [INFO] [stderr] Downloaded pyo3-macros-backend v0.25.1 [INFO] [stderr] Downloaded ethnum v1.5.2 [INFO] [stderr] Downloaded phf v0.12.1 [INFO] [stderr] Downloaded planus v1.1.1 [INFO] [stderr] Downloaded pyo3-build-config v0.25.1 [INFO] [stderr] Downloaded strength_reduce v0.2.4 [INFO] [stderr] Downloaded polars-row v0.51.0 [INFO] [stderr] Downloaded polars-schema v0.51.0 [INFO] [stderr] Downloaded target-lexicon v0.13.5 [INFO] [stderr] Downloaded debug_unsafe v0.1.4 [INFO] [stderr] Downloaded phf_shared v0.12.1 [INFO] [stderr] Downloaded polars-dtype v0.51.0 [INFO] [stderr] Downloaded serde_stacker v0.1.14 [INFO] [stderr] Downloaded chrono-tz v0.10.4 [INFO] [stderr] Downloaded pyo3 v0.25.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 5f1fdb85f4f1b6d6a71058e118b1bb2fcfd602f71a3f9e734f0ae738932ffa10 [INFO] running `Command { std: "docker" "start" "-a" "5f1fdb85f4f1b6d6a71058e118b1bb2fcfd602f71a3f9e734f0ae738932ffa10", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "5f1fdb85f4f1b6d6a71058e118b1bb2fcfd602f71a3f9e734f0ae738932ffa10", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5f1fdb85f4f1b6d6a71058e118b1bb2fcfd602f71a3f9e734f0ae738932ffa10", kill_on_drop: false }` [INFO] [stdout] 5f1fdb85f4f1b6d6a71058e118b1bb2fcfd602f71a3f9e734f0ae738932ffa10 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d74654971cb1f26bcaf8015505ddd8ca549ff2df4c310e77f8ab8652a2f887a8 [INFO] running `Command { std: "docker" "start" "-a" "d74654971cb1f26bcaf8015505ddd8ca549ff2df4c310e77f8ab8652a2f887a8", kill_on_drop: false }` [INFO] [stderr] Compiling strum v0.27.2 [INFO] [stderr] Compiling syn v2.0.117 [INFO] [stderr] Compiling serde_json v1.0.149 [INFO] [stderr] Compiling chrono v0.4.44 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling thiserror-impl v2.0.18 [INFO] [stderr] Compiling clap_derive v4.5.55 [INFO] [stderr] Compiling strum_macros v0.27.2 [INFO] [stderr] Compiling thiserror v2.0.18 [INFO] [stderr] Compiling clap v4.5.60 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling serde_spanned v0.6.9 [INFO] [stderr] Compiling toml_datetime v0.6.11 [INFO] [stderr] Compiling immunum v1.0.0 (/opt/rustwide/workdir) [INFO] [stderr] Compiling toml_edit v0.22.27 [INFO] [stderr] Compiling toml v0.8.23 [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 19.08s [INFO] running `Command { std: "docker" "inspect" "d74654971cb1f26bcaf8015505ddd8ca549ff2df4c310e77f8ab8652a2f887a8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d74654971cb1f26bcaf8015505ddd8ca549ff2df4c310e77f8ab8652a2f887a8", kill_on_drop: false }` [INFO] [stdout] d74654971cb1f26bcaf8015505ddd8ca549ff2df4c310e77f8ab8652a2f887a8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 71338b8ae82b8d4b7c5e5208f4ef1717af77781d188d012b221d5110b8e333c4 [INFO] running `Command { std: "docker" "start" "-a" "71338b8ae82b8d4b7c5e5208f4ef1717af77781d188d012b221d5110b8e333c4", kill_on_drop: false }` [INFO] [stderr] Compiling wasm-bindgen-shared v0.2.114 [INFO] [stderr] Compiling proc-macro2 v1.0.106 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling bumpalo v3.20.2 [INFO] [stderr] Compiling zerocopy v0.8.41 [INFO] [stderr] Compiling serde_json v1.0.149 [INFO] [stderr] Compiling regex-automata v0.4.14 [INFO] [stderr] Compiling wasm-bindgen v0.2.114 [INFO] [stderr] Compiling ciborium-io v0.2.2 [INFO] [stderr] Compiling futures-core v0.3.32 [INFO] [stderr] Compiling cast v0.3.0 [INFO] [stderr] Compiling plotters-backend v0.3.7 [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] Compiling oorandom v11.1.5 [INFO] [stderr] Compiling rayon v1.11.0 [INFO] [stderr] Compiling is-terminal v0.4.17 [INFO] [stderr] Compiling wait-timeout v0.2.1 [INFO] [stderr] Compiling futures-util v0.3.32 [INFO] [stderr] Compiling nu-ansi-term v0.50.3 [INFO] [stderr] Compiling wasm-bindgen-test-shared v0.2.114 [INFO] [stderr] Compiling anes v0.1.6 [INFO] [stderr] Compiling plotters-svg v0.3.7 [INFO] [stderr] Compiling tempfile v3.26.0 [INFO] [stderr] Compiling quote v1.0.45 [INFO] [stderr] Compiling float-cmp v0.10.0 [INFO] [stderr] Compiling chrono v0.4.44 [INFO] [stderr] Compiling plotters v0.3.7 [INFO] [stderr] Compiling syn v2.0.117 [INFO] [stderr] Compiling criterion-plot v0.5.0 [INFO] [stderr] Compiling regex v1.12.3 [INFO] [stderr] Compiling bstr v1.12.1 [INFO] [stderr] Compiling predicates v3.1.4 [INFO] [stderr] Compiling assert_cmd v2.1.2 [INFO] [stderr] Compiling wasm-bindgen-macro-support v0.2.114 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling zerocopy-derive v0.8.41 [INFO] [stderr] Compiling clap_derive v4.5.55 [INFO] [stderr] Compiling thiserror-impl v2.0.18 [INFO] [stderr] Compiling async-trait v0.1.89 [INFO] [stderr] Compiling wasm-bindgen-test-macro v0.3.64 [INFO] [stderr] Compiling strum_macros v0.27.2 [INFO] [stderr] Compiling thiserror v2.0.18 [INFO] [stderr] Compiling clap v4.5.60 [INFO] [stderr] Compiling wasm-bindgen-macro v0.2.114 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling serde_spanned v0.6.9 [INFO] [stderr] Compiling toml_datetime v0.6.11 [INFO] [stderr] Compiling tinytemplate v1.2.1 [INFO] [stderr] Compiling immunum v1.0.0 (/opt/rustwide/workdir) [INFO] [stderr] Compiling toml_edit v0.22.27 [INFO] [stderr] Compiling js-sys v0.3.91 [INFO] [stderr] Compiling toml v0.8.23 [INFO] [stderr] Compiling half v2.7.1 [INFO] [stderr] Compiling ciborium-ll v0.2.2 [INFO] [stderr] Compiling ciborium v0.2.2 [INFO] [stderr] Compiling criterion v0.5.1 [INFO] [stderr] Compiling wasm-bindgen-futures v0.4.64 [INFO] [stderr] Compiling wasm-bindgen-test v0.3.64 [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 43.13s [INFO] running `Command { std: "docker" "inspect" "71338b8ae82b8d4b7c5e5208f4ef1717af77781d188d012b221d5110b8e333c4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "71338b8ae82b8d4b7c5e5208f4ef1717af77781d188d012b221d5110b8e333c4", kill_on_drop: false }` [INFO] [stdout] 71338b8ae82b8d4b7c5e5208f4ef1717af77781d188d012b221d5110b8e333c4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] bb894e77448cef3906f83bf2f4836d4a8e7462392dfaac9565afaf3512648459 [INFO] running `Command { std: "docker" "start" "-a" "bb894e77448cef3906f83bf2f4836d4a8e7462392dfaac9565afaf3512648459", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.32s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/immunum-ed6bed71405bf901) [INFO] [stdout] [INFO] [stdout] running 49 tests [INFO] [stdout] test alignment::tests::test_empty_sequence ... ok [INFO] [stdout] test alignment::tests::test_align_simple ... ok [INFO] [stdout] test alignment::tests::test_leading_prefix ... ok [INFO] [stdout] test alignment::tests::test_partial_sequence_end ... ok [INFO] [stdout] test alignment::tests::test_fragment_alignment ... ok [INFO] [stdout] test annotator::tests::test_number_with_single_chain ... ok [INFO] [stdout] test alignment::tests::test_trailing_suffix ... ok [INFO] [stdout] test alignment::tests::test_both_flanking ... ok [INFO] [stdout] test annotator::tests::test_segment_igh_sequence ... ok [INFO] [stdout] test io::tests::test_output_format_from_str ... ok [INFO] [stdout] test io::tests::test_read_fasta_empty ... ok [INFO] [stdout] test io::tests::test_read_fasta_multi ... ok [INFO] [stdout] test io::tests::test_read_fasta_single ... ok [INFO] [stdout] test io::tests::test_write_json ... ok [INFO] [stdout] test io::tests::test_write_jsonl ... ok [INFO] [stdout] test alignment::tests::test_normal_antibody_no_flanking ... ok [INFO] [stdout] test io::tests::test_write_tsv ... ok [INFO] [stdout] test numbering::imgt::tests::test_cdr2_numbering ... ok [INFO] [stdout] test numbering::imgt::tests::test_cdr1_numbering ... ok [INFO] [stdout] test annotator::tests::test_number_with_suffix ... ok [INFO] [stdout] test numbering::imgt::tests::test_cdr3_numbering ... ok [INFO] [stdout] test types::tests::test_parse_chain_spec_csv ... ok [INFO] [stdout] test types::tests::test_parse_chain_spec_groups ... ok [INFO] [stdout] test alignment::tests::test_partial_sequence_start ... ok [INFO] [stdout] test types::tests::test_parse_chain_spec_invalid ... ok [INFO] [stdout] test types::tests::test_position_parsing ... ok [INFO] [stdout] test scoring::tests::test_load_igh_matrix ... ok [INFO] [stdout] test annotator::tests::test_number_with_both_flanking ... ok [INFO] [stdout] test validation::tests::test_validate_igh_sequences ... ok [INFO] [stdout] test types::tests::test_chain_parsing ... ok [INFO] [stdout] test annotator::tests::test_number_with_prefix ... ok [INFO] [stdout] test validation::tests::test_validate_igl_kabat_sequences ... ok [INFO] [stdout] test validation::tests::test_validate_igl_sequences ... ok [INFO] [stdout] test scoring::tests::test_gap_penalties ... ok [INFO] [stdout] test validation::tests::test_validate_tra_sequences ... ok [INFO] [stdout] test validation::tests::test_validate_trb_sequences ... ok [INFO] [stdout] test annotator::tests::test_create_annotator_with_chains ... ok [INFO] [stdout] test validation::tests::test_validate_igk_kabat_sequences ... ok [INFO] [stdout] test scoring::tests::test_scores_reasonable ... ok [INFO] [stdout] test validation::tests::test_load_validation_csv ... ok [INFO] [stdout] test validation::tests::test_validate_igh_kabat_sequences ... ok [INFO] [stdout] test validation::tests::test_validate_trd_sequences ... ok [INFO] [stdout] test validation::tests::test_validate_trg_sequences ... ok [INFO] [stdout] test validation::tests::test_validate_igk_sequences ... ok [INFO] [stdout] test annotator::tests::test_empty_sequence ... ok [INFO] [stdout] test annotator::tests::test_number_igh_sequence ... ok [INFO] [stdout] test scoring::tests::test_load_all_matrices ... ok [INFO] [stdout] test annotator::tests::test_create_annotator ... ok [INFO] [stdout] test annotator::tests::test_number_no_flanking_has_zero_query_start_end ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 49 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/benchmark.rs (/opt/rustwide/target/debug/deps/benchmark-139c6a048e1648d9) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/debug_validation.rs (/opt/rustwide/target/debug/deps/debug_validation-7812a2cdbef5ebbb) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/immunum-35d5d94e65cb3e66) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests immunum [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test src/lib.rs - (line 23) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.26s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "bb894e77448cef3906f83bf2f4836d4a8e7462392dfaac9565afaf3512648459", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bb894e77448cef3906f83bf2f4836d4a8e7462392dfaac9565afaf3512648459", kill_on_drop: false }` [INFO] [stdout] bb894e77448cef3906f83bf2f4836d4a8e7462392dfaac9565afaf3512648459