[INFO] fetching crate gskits 0.15.15... [INFO] testing gskits-0.15.15 against master#562dee4820c458d823175268e41601d4c060588a for pr-154210-1 [INFO] extracting crate gskits 0.15.15 into /workspace/builds/worker-7-tc1/source [INFO] started tweaking crates.io crate gskits 0.15.15 [INFO] finished tweaking crates.io crate gskits 0.15.15 [INFO] tweaked toml for crates.io crate gskits 0.15.15 written to /workspace/builds/worker-7-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate gskits 0.15.15 on toolchain 562dee4820c458d823175268e41601d4c060588a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate gskits 0.15.15 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded icu_locid_transform_data v1.5.1 [INFO] [stderr] Downloaded windows-strings v0.4.0 [INFO] [stderr] Downloaded derive-new v0.7.0 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded linear-map v1.2.0 [INFO] [stderr] Downloaded uuid v1.16.0 [INFO] [stderr] Downloaded csv-core v0.1.12 [INFO] [stderr] Downloaded ordered-float v5.0.0 [INFO] [stderr] Downloaded windows-core v0.61.0 [INFO] [stderr] Downloaded anyhow v1.0.97 [INFO] [stderr] Downloaded serde_cbor v0.11.2 [INFO] [stderr] Downloaded rand v0.9.0 [INFO] [stderr] Downloaded zerocopy-derive v0.8.24 [INFO] [stderr] Downloaded cc v1.2.18 [INFO] [stderr] Downloaded rust-htslib v0.49.0 [INFO] [stderr] Downloaded objc2-core-foundation v0.3.0 [INFO] [stderr] Downloaded portable-atomic v1.11.0 [INFO] [stderr] Downloaded sysinfo v0.34.2 [INFO] [stderr] Downloaded zerocopy v0.8.24 [INFO] [stderr] Downloaded bindgen v0.69.5 [INFO] [stderr] Downloaded bio v2.2.0 [INFO] [stderr] Downloaded icu_properties_data v1.5.1 [INFO] [stderr] Downloaded criterion v0.3.6 [INFO] [stderr] Downloaded openssl-sys v0.9.107 [INFO] [stderr] Downloaded icu_normalizer_data v1.5.1 [INFO] [stderr] Downloaded bytemuck v1.22.0 [INFO] [stderr] Downloaded criterion-plot v0.4.5 [INFO] [stderr] Downloaded half v1.8.3 [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded libloading v0.8.6 [INFO] [stderr] Downloaded libz-sys v1.1.22 [INFO] [stderr] Downloaded curl-sys v0.4.80+curl-8.12.1 [INFO] [stderr] Downloaded hts-sys v2.2.0 [INFO] [stderr] Downloaded openssl-src v300.5.0+3.5.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 35ea94f437776edcb7c18a91fc038dca76e3cd3b0e692d975e722e7f6dbd4c29 [INFO] running `Command { std: "docker" "start" "-a" "35ea94f437776edcb7c18a91fc038dca76e3cd3b0e692d975e722e7f6dbd4c29", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "35ea94f437776edcb7c18a91fc038dca76e3cd3b0e692d975e722e7f6dbd4c29", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "35ea94f437776edcb7c18a91fc038dca76e3cd3b0e692d975e722e7f6dbd4c29", kill_on_drop: false }` [INFO] [stdout] 35ea94f437776edcb7c18a91fc038dca76e3cd3b0e692d975e722e7f6dbd4c29 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 20257df558862d3d710ff894deb983c5a4d9f5bb07914d0108dbdcc56f308f1c [INFO] running `Command { std: "docker" "start" "-a" "20257df558862d3d710ff894deb983c5a4d9f5bb07914d0108dbdcc56f308f1c", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.94 [INFO] [stderr] Compiling libc v0.2.171 [INFO] [stderr] Compiling libm v0.2.11 [INFO] [stderr] Compiling zerocopy v0.8.24 [INFO] [stderr] Compiling icu_locid_transform_data v1.5.1 [INFO] [stderr] Compiling litemap v0.7.5 [INFO] [stderr] Compiling glob v0.3.2 [INFO] [stderr] Compiling writeable v0.5.5 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling icu_properties_data v1.5.1 [INFO] [stderr] Compiling icu_normalizer_data v1.5.1 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling libloading v0.8.6 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling rustversion v1.0.20 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling bytemuck v1.22.0 [INFO] [stderr] Compiling getrandom v0.3.2 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling bindgen v0.69.5 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling typenum v1.18.0 [INFO] [stderr] Compiling utf16_iter v1.0.5 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling smallvec v1.15.0 [INFO] [stderr] Compiling write16 v1.0.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling bitflags v2.9.0 [INFO] [stderr] Compiling wide v0.7.32 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling jobserver v0.1.33 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling syn v2.0.100 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling cc v1.2.18 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling portable-atomic v1.11.0 [INFO] [stderr] Compiling percent-encoding v2.3.1 [INFO] [stderr] Compiling anyhow v1.0.97 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling rand_core v0.9.3 [INFO] [stderr] Compiling hashbrown v0.15.2 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling form_urlencoded v1.2.1 [INFO] [stderr] Compiling csv-core v0.1.12 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling fixedbitset v0.5.7 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling unicode-width v0.2.0 [INFO] [stderr] Compiling bit-set v0.8.0 [INFO] [stderr] Compiling console v0.15.11 [INFO] [stderr] Compiling itertools v0.14.0 [INFO] [stderr] Compiling cmake v0.1.54 [INFO] [stderr] Compiling openssl-src v300.5.0+3.5.0 [INFO] [stderr] Compiling ppv-lite86 v0.2.21 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling simba v0.9.0 [INFO] [stderr] Compiling indexmap v2.9.0 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling ordered-float v5.0.0 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling bytecount v0.6.8 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand_chacha v0.9.0 [INFO] [stderr] Compiling libz-sys v1.1.22 [INFO] [stderr] Compiling openssl-sys v0.9.107 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling curl-sys v0.4.80+curl-8.12.1 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling petgraph v0.7.1 [INFO] [stderr] Compiling rand v0.9.0 [INFO] [stderr] Compiling number_prefix v0.4.0 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling sha1_smol v1.0.1 [INFO] [stderr] Compiling iana-time-zone v0.1.63 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling strum v0.26.3 [INFO] [stderr] Compiling chrono v0.4.40 [INFO] [stderr] Compiling uuid v1.16.0 [INFO] [stderr] Compiling indicatif v0.17.11 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling sysinfo v0.34.2 [INFO] [stderr] Compiling synstructure v0.13.1 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] Compiling yoke-derive v0.7.5 [INFO] [stderr] Compiling zerovec-derive v0.10.3 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling icu_provider_macros v1.5.0 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling tracing-attributes v0.1.28 [INFO] [stderr] Compiling derive-new v0.7.0 [INFO] [stderr] Compiling nalgebra v0.33.2 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling tracing v0.1.41 [INFO] [stderr] Compiling zerofrom v0.1.6 [INFO] [stderr] Compiling yoke v0.7.5 [INFO] [stderr] Compiling zerovec v0.10.4 [INFO] [stderr] Compiling tinystr v0.7.6 [INFO] [stderr] Compiling icu_collections v1.5.0 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling icu_locid v1.5.0 [INFO] [stderr] Compiling hts-sys v2.2.0 [INFO] [stderr] Compiling icu_provider v1.5.0 [INFO] [stderr] Compiling icu_locid_transform v1.5.0 [INFO] [stderr] Compiling icu_properties v1.5.1 [INFO] [stderr] Compiling multimap v0.10.0 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling icu_normalizer v1.5.0 [INFO] [stderr] Compiling idna_adapter v1.2.0 [INFO] [stderr] Compiling idna v1.0.3 [INFO] [stderr] Compiling url v2.5.4 [INFO] [stderr] Compiling statrs v0.18.0 [INFO] [stderr] Compiling bio v2.2.0 [INFO] [stderr] Compiling rust-htslib v0.49.0 [INFO] [stderr] Compiling gskits v0.15.15 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 42s [INFO] running `Command { std: "docker" "inspect" "20257df558862d3d710ff894deb983c5a4d9f5bb07914d0108dbdcc56f308f1c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "20257df558862d3d710ff894deb983c5a4d9f5bb07914d0108dbdcc56f308f1c", kill_on_drop: false }` [INFO] [stdout] 20257df558862d3d710ff894deb983c5a4d9f5bb07914d0108dbdcc56f308f1c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] b73ec3625a8cc274a8915f9f8e8693753cdb47ad33b5d1cc30cdf37ac0fff74c [INFO] running `Command { std: "docker" "start" "-a" "b73ec3625a8cc274a8915f9f8e8693753cdb47ad33b5d1cc30cdf37ac0fff74c", kill_on_drop: false }` [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling unicode-width v0.1.14 [INFO] [stderr] Compiling plotters-backend v0.3.7 [INFO] [stderr] Compiling serde_json v1.0.140 [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] Compiling half v1.8.3 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling clap v2.34.0 [INFO] [stderr] Compiling serde_cbor v0.11.2 [INFO] [stderr] Compiling plotters-svg v0.3.7 [INFO] [stderr] Compiling plotters v0.3.7 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling tinytemplate v1.2.1 [INFO] [stderr] Compiling criterion-plot v0.4.5 [INFO] [stderr] Compiling criterion v0.3.6 [INFO] [stderr] Compiling gskits v0.15.15 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 17.86s [INFO] running `Command { std: "docker" "inspect" "b73ec3625a8cc274a8915f9f8e8693753cdb47ad33b5d1cc30cdf37ac0fff74c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b73ec3625a8cc274a8915f9f8e8693753cdb47ad33b5d1cc30cdf37ac0fff74c", kill_on_drop: false }` [INFO] [stdout] b73ec3625a8cc274a8915f9f8e8693753cdb47ad33b5d1cc30cdf37ac0fff74c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] cd3f925f8d0faf542b0df497b4743b4174a4fad5e4cad537ab60f9b5e2a24727 [INFO] running `Command { std: "docker" "start" "-a" "cd3f925f8d0faf542b0df497b4743b4174a4fad5e4cad537ab60f9b5e2a24727", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.36s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/gskits-3bfd000d863a7cde) [INFO] [stdout] [INFO] [stdout] running 28 tests [INFO] [stdout] test ds::region::test::test_calcute_gaps ... ok [INFO] [stdout] test ds::region::test::test_calcute_overlap_metrics ... ok [INFO] [stdout] test ds::test::test_read_info ... ok [INFO] [stdout] test dna::test::test_reverse_complement ... ok [INFO] [stdout] test dna::test::test_bio_alpha ... ok [INFO] [stdout] test gsbam::cigar_ext::tests::test_ideneity_special_case ... ok [INFO] [stdout] test gsbam::cigar_ext::tests::test_edge_cases ... ok [INFO] [stdout] test gsbam::cigar_ext::tests::test_long_ins_regions_in_query ... ok [INFO] [stdout] test gsbam::cigar_ext::tests::test_parse_cigar_str ... ok [INFO] [stdout] test gsbam::cigar_ext::tests::test_range_identity ... ok [INFO] [stdout] test gsbam::plp_counts_from_records::test::test_plp_cnts ... ok [INFO] [stdout] test gsbam::plp_counts_from_records::test::test_region_plp_cnts ... ok [INFO] [stdout] test gsbam::plp_counts_from_records::test::test_test_plp_using_aligned_pairs_with_right_soft_clip ... ok [INFO] [stdout] test matrix::transpose::test::test_transpose_blocked ... ok [INFO] [stdout] test phreq::test::test_phreq2quality ... ok [INFO] [stdout] test phreq::test::test_phreq_list_2_err_list ... ok [INFO] [stdout] test phreq::test::test_quality_2_phreq ... ok [INFO] [stdout] test test::test_alphabet ... ok [INFO] [stdout] test utils::test::test_range_parser ... ok [INFO] [stdout] test phreq::test::test_phreq_list_2_quality ... ok [INFO] [stdout] test poly_n::test::test_find_homopolymer_regions ... ok [INFO] [stdout] test phreq::test::test_phreq_list_2_quality_list ... ok [INFO] [stdout] test matrix::transpose::test::test_transpose ... ok [INFO] [stdout] test gsbam::plp_counts_from_records::test::test_plp_cnts_with_blacklist ... ok [INFO] [stdout] test gsbam::plp_counts_from_records::test::test_test_plp_using_aligned_pairs_with_indel ... ok [INFO] [stdout] test gsbam::bam_header_ext::test::test_header_ext ... FAILED [INFO] [stdout] test gsbam::bam_header_ext::test::test_rg_rn_mapping ... FAILED [INFO] [stdout] test gsbam::plp_counts_from_records::test::test_plp_within_region ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- gsbam::bam_header_ext::test::test_header_ext stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'gsbam::bam_header_ext::test::test_header_ext' (22) panicked at src/gsbam/bam_header_ext.rs:155:89: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: FileNotFound { path: "test_data/header_only.bam" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5602f3e4420a - std[31e582c13f4e914f]::backtrace_rs::backtrace::libunwind::trace [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x5602f3e4420a - std[31e582c13f4e914f]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x5602f3e4420a - std[31e582c13f4e914f]::sys::backtrace::_print_fmt [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/backtrace.rs:74:9 [INFO] [stdout] 3: 0x5602f3e4420a - <::print::DisplayBacktrace as core[fa0eadad68403074]::fmt::Display>::fmt [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/backtrace.rs:44:26 [INFO] [stdout] 4: 0x5602f3e5a6aa - ::fmt [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/fmt/rt.rs:152:76 [INFO] [stdout] 5: 0x5602f3e5a6aa - core[fa0eadad68403074]::fmt::write [INFO] [stdout] 6: 0x5602f3e48b42 - std[31e582c13f4e914f]::io::default_write_fmt::> [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x5602f3e48b42 - as std[31e582c13f4e914f]::io::Write>::write_fmt [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/io/mod.rs:1994:13 [INFO] [stdout] 8: 0x5602f3e233af - ::print [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/backtrace.rs:47:9 [INFO] [stdout] 9: 0x5602f3e233af - std[31e582c13f4e914f]::panicking::default_hook::{closure#0} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:292:27 [INFO] [stdout] 10: 0x5602f3e3c779 - std[31e582c13f4e914f]::panicking::default_hook [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:316:9 [INFO] [stdout] 11: 0x5602f36c845c - core[fa0eadad68403074]::ops::function::Fn<(&'a std[31e582c13f4e914f]::panic::PanicHookInfo<'b>,), Output = ()> + core[fa0eadad68403074]::marker::Sync + core[fa0eadad68403074]::marker::Send> as core[fa0eadad68403074]::ops::function::Fn<(&std[31e582c13f4e914f]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/alloc/src/boxed.rs:2254:9 [INFO] [stdout] 12: 0x5602f36c845c - test[7530e63dc052480e]::test_main_with_exit_callback::::{closure#0} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x5602f3e3c932 - core[fa0eadad68403074]::ops::function::Fn<(&'a std[31e582c13f4e914f]::panic::PanicHookInfo<'b>,), Output = ()> + core[fa0eadad68403074]::marker::Sync + core[fa0eadad68403074]::marker::Send> as core[fa0eadad68403074]::ops::function::Fn<(&std[31e582c13f4e914f]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/alloc/src/boxed.rs:2254:9 [INFO] [stdout] 14: 0x5602f3e3c932 - std[31e582c13f4e914f]::panicking::panic_with_hook [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:833:13 [INFO] [stdout] 15: 0x5602f3e23468 - std[31e582c13f4e914f]::panicking::panic_handler::{closure#0} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:698:13 [INFO] [stdout] 16: 0x5602f3e18649 - std[31e582c13f4e914f]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/backtrace.rs:182:18 [INFO] [stdout] 17: 0x5602f3e2417d - __rustc[fc8e3a9f23f26cb]::rust_begin_unwind [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:689:5 [INFO] [stdout] 18: 0x5602f3e5aeec - core[fa0eadad68403074]::panicking::panic_fmt [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x5602f3e5ac62 - core[fa0eadad68403074]::result::unwrap_failed [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/result.rs:1867:5 [INFO] [stdout] 20: 0x5602f36b2515 - >::unwrap [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/result.rs:1233:23 [INFO] [stdout] 21: 0x5602f36b2515 - gskits[6a86caf14f0b246c]::gsbam::bam_header_ext::test::test_header_ext [INFO] [stdout] at /opt/rustwide/workdir/src/gsbam/bam_header_ext.rs:155:89 [INFO] [stdout] 22: 0x5602f36b1767 - gskits[6a86caf14f0b246c]::gsbam::bam_header_ext::test::test_header_ext::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/src/gsbam/bam_header_ext.rs:154:25 [INFO] [stdout] 23: 0x5602f36a9b46 - >::call_once [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: 0x5602f36bc53b - core[fa0eadad68403074]::result::Result<(), alloc[49b8922c36ca62de]::string::String> as core[fa0eadad68403074]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x5602f36bc53b - test[7530e63dc052480e]::__rust_begin_short_backtrace::, fn() -> core[fa0eadad68403074]::result::Result<(), alloc[49b8922c36ca62de]::string::String>> [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/test/src/lib.rs:663:18 [INFO] [stdout] 26: 0x5602f36c8f2b - test[7530e63dc052480e]::run_test_in_process::{closure#0} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/test/src/lib.rs:686:74 [INFO] [stdout] 27: 0x5602f36c8f2b - as core[fa0eadad68403074]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 28: 0x5602f36c8f2b - std[31e582c13f4e914f]::panicking::catch_unwind::do_call::, core[fa0eadad68403074]::result::Result<(), alloc[49b8922c36ca62de]::string::String>> [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:581:40 [INFO] [stdout] 29: 0x5602f36c8f2b - std[31e582c13f4e914f]::panicking::catch_unwind::, core[fa0eadad68403074]::panic::unwind_safe::AssertUnwindSafe> [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:544:19 [INFO] [stdout] 30: 0x5602f36c8f2b - std[31e582c13f4e914f]::panic::catch_unwind::, core[fa0eadad68403074]::result::Result<(), alloc[49b8922c36ca62de]::string::String>> [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x5602f36c8f2b - test[7530e63dc052480e]::run_test_in_process [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/test/src/lib.rs:686:27 [INFO] [stdout] 32: 0x5602f36c8f2b - test[7530e63dc052480e]::run_test::{closure#0} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/test/src/lib.rs:607:43 [INFO] [stdout] 33: 0x5602f36c3384 - test[7530e63dc052480e]::run_test::{closure#1} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/test/src/lib.rs:637:41 [INFO] [stdout] 34: 0x5602f36c3384 - std[31e582c13f4e914f]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/backtrace.rs:166:18 [INFO] [stdout] 35: 0x5602f36cbb32 - std[31e582c13f4e914f]::thread::lifecycle::spawn_unchecked::::{closure#1}::{closure#0} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/thread/lifecycle.rs:91:13 [INFO] [stdout] 36: 0x5602f36cbb32 - ::{closure#1}::{closure#0}> as core[fa0eadad68403074]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 37: 0x5602f36cbb32 - std[31e582c13f4e914f]::panicking::catch_unwind::do_call::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:581:40 [INFO] [stdout] 38: 0x5602f36cbb32 - std[31e582c13f4e914f]::panicking::catch_unwind::<(), core[fa0eadad68403074]::panic::unwind_safe::AssertUnwindSafe::{closure#1}::{closure#0}>> [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:544:19 [INFO] [stdout] 39: 0x5602f36cbb32 - std[31e582c13f4e914f]::panic::catch_unwind::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x5602f36cbb32 - std[31e582c13f4e914f]::thread::lifecycle::spawn_unchecked::::{closure#1} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/thread/lifecycle.rs:89:26 [INFO] [stdout] 41: 0x5602f36cbb32 - ::{closure#1} as core[fa0eadad68403074]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 42: 0x5602f3e43b1f - + core[fa0eadad68403074]::marker::Send> as core[fa0eadad68403074]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/alloc/src/boxed.rs:2240:9 [INFO] [stdout] 43: 0x5602f3e43b1f - ::new::thread_start [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/thread/unix.rs:118:17 [INFO] [stdout] 44: 0x7b8023713aa4 - [INFO] [stdout] 45: 0x7b80237a0a64 - clone [INFO] [stdout] 46: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- gsbam::bam_header_ext::test::test_rg_rn_mapping stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'gsbam::bam_header_ext::test::test_rg_rn_mapping' (23) panicked at src/gsbam/bam_header_ext.rs:166:89: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: FileNotFound { path: "test_data/header_only.bam" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5602f3e4420a - std[31e582c13f4e914f]::backtrace_rs::backtrace::libunwind::trace [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x5602f3e4420a - std[31e582c13f4e914f]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x5602f3e4420a - std[31e582c13f4e914f]::sys::backtrace::_print_fmt [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/backtrace.rs:74:9 [INFO] [stdout] 3: 0x5602f3e4420a - <::print::DisplayBacktrace as core[fa0eadad68403074]::fmt::Display>::fmt [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/backtrace.rs:44:26 [INFO] [stdout] 4: 0x5602f3e5a6aa - ::fmt [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/fmt/rt.rs:152:76 [INFO] [stdout] 5: 0x5602f3e5a6aa - core[fa0eadad68403074]::fmt::write [INFO] [stdout] 6: 0x5602f3e48b42 - std[31e582c13f4e914f]::io::default_write_fmt::> [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x5602f3e48b42 - as std[31e582c13f4e914f]::io::Write>::write_fmt [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/io/mod.rs:1994:13 [INFO] [stdout] 8: 0x5602f3e233af - ::print [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/backtrace.rs:47:9 [INFO] [stdout] 9: 0x5602f3e233af - std[31e582c13f4e914f]::panicking::default_hook::{closure#0} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:292:27 [INFO] [stdout] 10: 0x5602f3e3c779 - std[31e582c13f4e914f]::panicking::default_hook [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:316:9 [INFO] [stdout] 11: 0x5602f36c845c - core[fa0eadad68403074]::ops::function::Fn<(&'a std[31e582c13f4e914f]::panic::PanicHookInfo<'b>,), Output = ()> + core[fa0eadad68403074]::marker::Sync + core[fa0eadad68403074]::marker::Send> as core[fa0eadad68403074]::ops::function::Fn<(&std[31e582c13f4e914f]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/alloc/src/boxed.rs:2254:9 [INFO] [stdout] 12: 0x5602f36c845c - test[7530e63dc052480e]::test_main_with_exit_callback::::{closure#0} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x5602f3e3c932 - core[fa0eadad68403074]::ops::function::Fn<(&'a std[31e582c13f4e914f]::panic::PanicHookInfo<'b>,), Output = ()> + core[fa0eadad68403074]::marker::Sync + core[fa0eadad68403074]::marker::Send> as core[fa0eadad68403074]::ops::function::Fn<(&std[31e582c13f4e914f]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/alloc/src/boxed.rs:2254:9 [INFO] [stdout] 14: 0x5602f3e3c932 - std[31e582c13f4e914f]::panicking::panic_with_hook [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:833:13 [INFO] [stdout] 15: 0x5602f3e23468 - std[31e582c13f4e914f]::panicking::panic_handler::{closure#0} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:698:13 [INFO] [stdout] 16: 0x5602f3e18649 - std[31e582c13f4e914f]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/backtrace.rs:182:18 [INFO] [stdout] 17: 0x5602f3e2417d - __rustc[fc8e3a9f23f26cb]::rust_begin_unwind [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:689:5 [INFO] [stdout] 18: 0x5602f3e5aeec - core[fa0eadad68403074]::panicking::panic_fmt [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x5602f3e5ac62 - core[fa0eadad68403074]::result::unwrap_failed [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/result.rs:1867:5 [INFO] [stdout] 20: 0x5602f36b27b5 - >::unwrap [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/result.rs:1233:23 [INFO] [stdout] 21: 0x5602f36b27b5 - gskits[6a86caf14f0b246c]::gsbam::bam_header_ext::test::test_rg_rn_mapping [INFO] [stdout] at /opt/rustwide/workdir/src/gsbam/bam_header_ext.rs:166:89 [INFO] [stdout] 22: 0x5602f36b1797 - gskits[6a86caf14f0b246c]::gsbam::bam_header_ext::test::test_rg_rn_mapping::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/src/gsbam/bam_header_ext.rs:165:28 [INFO] [stdout] 23: 0x5602f36a9b86 - >::call_once [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: 0x5602f36bc53b - core[fa0eadad68403074]::result::Result<(), alloc[49b8922c36ca62de]::string::String> as core[fa0eadad68403074]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x5602f36bc53b - test[7530e63dc052480e]::__rust_begin_short_backtrace::, fn() -> core[fa0eadad68403074]::result::Result<(), alloc[49b8922c36ca62de]::string::String>> [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/test/src/lib.rs:663:18 [INFO] [stdout] 26: 0x5602f36c8f2b - test[7530e63dc052480e]::run_test_in_process::{closure#0} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/test/src/lib.rs:686:74 [INFO] [stdout] 27: 0x5602f36c8f2b - as core[fa0eadad68403074]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 28: 0x5602f36c8f2b - std[31e582c13f4e914f]::panicking::catch_unwind::do_call::, core[fa0eadad68403074]::result::Result<(), alloc[49b8922c36ca62de]::string::String>> [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:581:40 [INFO] [stdout] 29: 0x5602f36c8f2b - std[31e582c13f4e914f]::panicking::catch_unwind::, core[fa0eadad68403074]::panic::unwind_safe::AssertUnwindSafe> [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:544:19 [INFO] [stdout] 30: 0x5602f36c8f2b - std[31e582c13f4e914f]::panic::catch_unwind::, core[fa0eadad68403074]::result::Result<(), alloc[49b8922c36ca62de]::string::String>> [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x5602f36c8f2b - test[7530e63dc052480e]::run_test_in_process [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/test/src/lib.rs:686:27 [INFO] [stdout] 32: 0x5602f36c8f2b - test[7530e63dc052480e]::run_test::{closure#0} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/test/src/lib.rs:607:43 [INFO] [stdout] 33: 0x5602f36c3384 - test[7530e63dc052480e]::run_test::{closure#1} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/test/src/lib.rs:637:41 [INFO] [stdout] 34: 0x5602f36c3384 - std[31e582c13f4e914f]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/backtrace.rs:166:18 [INFO] [stdout] 35: 0x5602f36cbb32 - std[31e582c13f4e914f]::thread::lifecycle::spawn_unchecked::::{closure#1}::{closure#0} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/thread/lifecycle.rs:91:13 [INFO] [stdout] 36: 0x5602f36cbb32 - ::{closure#1}::{closure#0}> as core[fa0eadad68403074]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 37: 0x5602f36cbb32 - std[31e582c13f4e914f]::panicking::catch_unwind::do_call::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:581:40 [INFO] [stdout] 38: 0x5602f36cbb32 - std[31e582c13f4e914f]::panicking::catch_unwind::<(), core[fa0eadad68403074]::panic::unwind_safe::AssertUnwindSafe::{closure#1}::{closure#0}>> [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:544:19 [INFO] [stdout] 39: 0x5602f36cbb32 - std[31e582c13f4e914f]::panic::catch_unwind::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x5602f36cbb32 - std[31e582c13f4e914f]::thread::lifecycle::spawn_unchecked::::{closure#1} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/thread/lifecycle.rs:89:26 [INFO] [stdout] 41: 0x5602f36cbb32 - ::{closure#1} as core[fa0eadad68403074]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 42: 0x5602f3e43b1f - + core[fa0eadad68403074]::marker::Send> as core[fa0eadad68403074]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/alloc/src/boxed.rs:2240:9 [INFO] [stdout] 43: 0x5602f3e43b1f - ::new::thread_start [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/thread/unix.rs:118:17 [INFO] [stdout] 44: 0x7b8023713aa4 - [INFO] [stdout] 45: 0x7b80237a0a64 - clone [INFO] [stdout] 46: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- gsbam::plp_counts_from_records::test::test_plp_within_region stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'gsbam::plp_counts_from_records::test::test_plp_within_region' (31) panicked at src/gsbam/plp_counts_from_records.rs:612:84: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: FileNotFound { path: "test_data/sbr2smc.aligned.bam" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5602f3e4420a - std[31e582c13f4e914f]::backtrace_rs::backtrace::libunwind::trace [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x5602f3e4420a - std[31e582c13f4e914f]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x5602f3e4420a - std[31e582c13f4e914f]::sys::backtrace::_print_fmt [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/backtrace.rs:74:9 [INFO] [stdout] 3: 0x5602f3e4420a - <::print::DisplayBacktrace as core[fa0eadad68403074]::fmt::Display>::fmt [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/backtrace.rs:44:26 [INFO] [stdout] 4: 0x5602f3e5a6aa - ::fmt [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/fmt/rt.rs:152:76 [INFO] [stdout] 5: 0x5602f3e5a6aa - core[fa0eadad68403074]::fmt::write [INFO] [stdout] 6: 0x5602f3e48b42 - std[31e582c13f4e914f]::io::default_write_fmt::> [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x5602f3e48b42 - as std[31e582c13f4e914f]::io::Write>::write_fmt [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/io/mod.rs:1994:13 [INFO] [stdout] 8: 0x5602f3e233af - ::print [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/backtrace.rs:47:9 [INFO] [stdout] 9: 0x5602f3e233af - std[31e582c13f4e914f]::panicking::default_hook::{closure#0} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:292:27 [INFO] [stdout] 10: 0x5602f3e3c779 - std[31e582c13f4e914f]::panicking::default_hook [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:316:9 [INFO] [stdout] 11: 0x5602f36c845c - core[fa0eadad68403074]::ops::function::Fn<(&'a std[31e582c13f4e914f]::panic::PanicHookInfo<'b>,), Output = ()> + core[fa0eadad68403074]::marker::Sync + core[fa0eadad68403074]::marker::Send> as core[fa0eadad68403074]::ops::function::Fn<(&std[31e582c13f4e914f]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/alloc/src/boxed.rs:2254:9 [INFO] [stdout] 12: 0x5602f36c845c - test[7530e63dc052480e]::test_main_with_exit_callback::::{closure#0} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x5602f3e3c932 - core[fa0eadad68403074]::ops::function::Fn<(&'a std[31e582c13f4e914f]::panic::PanicHookInfo<'b>,), Output = ()> + core[fa0eadad68403074]::marker::Sync + core[fa0eadad68403074]::marker::Send> as core[fa0eadad68403074]::ops::function::Fn<(&std[31e582c13f4e914f]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/alloc/src/boxed.rs:2254:9 [INFO] [stdout] 14: 0x5602f3e3c932 - std[31e582c13f4e914f]::panicking::panic_with_hook [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:833:13 [INFO] [stdout] 15: 0x5602f3e23468 - std[31e582c13f4e914f]::panicking::panic_handler::{closure#0} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:698:13 [INFO] [stdout] 16: 0x5602f3e18649 - std[31e582c13f4e914f]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/backtrace.rs:182:18 [INFO] [stdout] 17: 0x5602f3e2417d - __rustc[fc8e3a9f23f26cb]::rust_begin_unwind [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:689:5 [INFO] [stdout] 18: 0x5602f3e5aeec - core[fa0eadad68403074]::panicking::panic_fmt [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x5602f3e5ac62 - core[fa0eadad68403074]::result::unwrap_failed [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/result.rs:1867:5 [INFO] [stdout] 20: 0x5602f36981bd - >::unwrap [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/result.rs:1233:23 [INFO] [stdout] 21: 0x5602f36981bd - gskits[6a86caf14f0b246c]::gsbam::plp_counts_from_records::test::test_plp_within_region [INFO] [stdout] at /opt/rustwide/workdir/src/gsbam/plp_counts_from_records.rs:612:84 [INFO] [stdout] 22: 0x5602f3695797 - gskits[6a86caf14f0b246c]::gsbam::plp_counts_from_records::test::test_plp_within_region::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/src/gsbam/plp_counts_from_records.rs:611:32 [INFO] [stdout] 23: 0x5602f36a9c46 - >::call_once [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: 0x5602f36bc53b - core[fa0eadad68403074]::result::Result<(), alloc[49b8922c36ca62de]::string::String> as core[fa0eadad68403074]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x5602f36bc53b - test[7530e63dc052480e]::__rust_begin_short_backtrace::, fn() -> core[fa0eadad68403074]::result::Result<(), alloc[49b8922c36ca62de]::string::String>> [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/test/src/lib.rs:663:18 [INFO] [stdout] 26: 0x5602f36c8f2b - test[7530e63dc052480e]::run_test_in_process::{closure#0} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/test/src/lib.rs:686:74 [INFO] [stdout] 27: 0x5602f36c8f2b - as core[fa0eadad68403074]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 28: 0x5602f36c8f2b - std[31e582c13f4e914f]::panicking::catch_unwind::do_call::, core[fa0eadad68403074]::result::Result<(), alloc[49b8922c36ca62de]::string::String>> [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:581:40 [INFO] [stdout] 29: 0x5602f36c8f2b - std[31e582c13f4e914f]::panicking::catch_unwind::, core[fa0eadad68403074]::panic::unwind_safe::AssertUnwindSafe> [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:544:19 [INFO] [stdout] 30: 0x5602f36c8f2b - std[31e582c13f4e914f]::panic::catch_unwind::, core[fa0eadad68403074]::result::Result<(), alloc[49b8922c36ca62de]::string::String>> [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x5602f36c8f2b - test[7530e63dc052480e]::run_test_in_process [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/test/src/lib.rs:686:27 [INFO] [stdout] 32: 0x5602f36c8f2b - test[7530e63dc052480e]::run_test::{closure#0} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/test/src/lib.rs:607:43 [INFO] [stdout] 33: 0x5602f36c3384 - test[7530e63dc052480e]::run_test::{closure#1} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/test/src/lib.rs:637:41 [INFO] [stdout] 34: 0x5602f36c3384 - std[31e582c13f4e914f]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/backtrace.rs:166:18 [INFO] [stdout] 35: 0x5602f36cbb32 - std[31e582c13f4e914f]::thread::lifecycle::spawn_unchecked::::{closure#1}::{closure#0} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/thread/lifecycle.rs:91:13 [INFO] [stdout] 36: 0x5602f36cbb32 - ::{closure#1}::{closure#0}> as core[fa0eadad68403074]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 37: 0x5602f36cbb32 - std[31e582c13f4e914f]::panicking::catch_unwind::do_call::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:581:40 [INFO] [stdout] 38: 0x5602f36cbb32 - std[31e582c13f4e914f]::panicking::catch_unwind::<(), core[fa0eadad68403074]::panic::unwind_safe::AssertUnwindSafe::{closure#1}::{closure#0}>> [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panicking.rs:544:19 [INFO] [stdout] 39: 0x5602f36cbb32 - std[31e582c13f4e914f]::panic::catch_unwind::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x5602f36cbb32 - std[31e582c13f4e914f]::thread::lifecycle::spawn_unchecked::::{closure#1} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/thread/lifecycle.rs:89:26 [INFO] [stdout] 41: 0x5602f36cbb32 - ::{closure#1} as core[fa0eadad68403074]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 42: 0x5602f3e43b1f - + core[fa0eadad68403074]::marker::Send> as core[fa0eadad68403074]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/alloc/src/boxed.rs:2240:9 [INFO] [stdout] 43: 0x5602f3e43b1f - ::new::thread_start [INFO] [stdout] at /rustc/562dee4820c458d823175268e41601d4c060588a/library/std/src/sys/thread/unix.rs:118:17 [INFO] [stdout] 44: 0x7b8023713aa4 - [INFO] [stdout] 45: 0x7b80237a0a64 - clone [INFO] [stdout] 46: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] gsbam::bam_header_ext::test::test_header_ext [INFO] [stdout] gsbam::bam_header_ext::test::test_rg_rn_mapping [INFO] [stdout] gsbam::plp_counts_from_records::test::test_plp_within_region [INFO] [stdout] [INFO] [stdout] test result: FAILED. 25 passed; 3 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.12s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass `--lib` [INFO] running `Command { std: "docker" "inspect" "cd3f925f8d0faf542b0df497b4743b4174a4fad5e4cad537ab60f9b5e2a24727", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cd3f925f8d0faf542b0df497b4743b4174a4fad5e4cad537ab60f9b5e2a24727", kill_on_drop: false }` [INFO] [stdout] cd3f925f8d0faf542b0df497b4743b4174a4fad5e4cad537ab60f9b5e2a24727