[INFO] fetching crate grz-check 0.2.1...
[INFO] testing grz-check-0.2.1 against master#562dee4820c458d823175268e41601d4c060588a for pr-154210-1
[INFO] extracting crate grz-check 0.2.1 into /workspace/builds/worker-3-tc1/source
[INFO] started tweaking crates.io crate grz-check 0.2.1
[INFO] finished tweaking crates.io crate grz-check 0.2.1
[INFO] tweaked toml for crates.io crate grz-check 0.2.1 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate grz-check 0.2.1 on toolchain 562dee4820c458d823175268e41601d4c060588a
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate grz-check 0.2.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
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[INFO] [stderr]   Downloaded libc v0.2.174
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 29749f8c8ae62c8218302c8cdb27e4e2145a0a7d6ddd57bdd08e59826f20540f
[INFO] running `Command { std: "docker" "start" "-a" "29749f8c8ae62c8218302c8cdb27e4e2145a0a7d6ddd57bdd08e59826f20540f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "29749f8c8ae62c8218302c8cdb27e4e2145a0a7d6ddd57bdd08e59826f20540f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "29749f8c8ae62c8218302c8cdb27e4e2145a0a7d6ddd57bdd08e59826f20540f", kill_on_drop: false }`
[INFO] [stdout] 29749f8c8ae62c8218302c8cdb27e4e2145a0a7d6ddd57bdd08e59826f20540f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] e3512b144e518bcd2a6d98c7e58ca0e120d3d16a24932a9bbd624d5f59d1453e
[INFO] running `Command { std: "docker" "start" "-a" "e3512b144e518bcd2a6d98c7e58ca0e120d3d16a24932a9bbd624d5f59d1453e", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.174
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.95
[INFO] [stderr]    Compiling unicode-ident v1.0.18
[INFO] [stderr]    Compiling cfg-if v1.0.1
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]    Compiling zlib-rs v0.5.1
[INFO] [stderr]    Compiling static_assertions v1.1.0
[INFO] [stderr]    Compiling adler2 v2.0.1
[INFO] [stderr]    Compiling lexical-util v1.0.6
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]    Compiling memchr v2.7.5
[INFO] [stderr]    Compiling typenum v1.18.0
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]    Compiling version_check v0.9.5
[INFO] [stderr]    Compiling syn v2.0.104
[INFO] [stderr]    Compiling rayon-core v1.12.1
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[INFO] [stderr]    Compiling generic-array v0.14.7
[INFO] [stderr]    Compiling lexical-parse-integer v1.0.5
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[INFO] [stderr]    Compiling bitflags v2.9.1
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[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]    Compiling utf8parse v0.2.2
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling byteorder v1.5.0
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[INFO] [stderr]    Compiling serde v1.0.219
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[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
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[INFO] [stderr]    Compiling crypto-common v0.1.6
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[INFO] [stderr]    Compiling log v0.4.27
[INFO] [stderr]    Compiling serde_json v1.0.140
[INFO] [stderr]    Compiling clap_lex v0.7.5
[INFO] [stderr]    Compiling console v0.16.0
[INFO] [stderr]    Compiling clap_builder v4.5.41
[INFO] [stderr]    Compiling libz-rs-sys v0.5.1
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[INFO] [stderr]    Compiling bzip2 v0.5.2
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[INFO] [stderr]    Compiling noodles-csi v0.50.0
[INFO] [stderr]    Compiling serde_derive v1.0.219
[INFO] [stderr]    Compiling bgzip v0.3.1
[INFO] [stderr]    Compiling noodles-sam v0.78.0
[INFO] [stderr]    Compiling clap_derive v4.5.41
[INFO] [stderr]    Compiling noodles-fastq v0.20.0
[INFO] [stderr]    Compiling itoa v1.0.15
[INFO] [stderr]    Compiling unicode-segmentation v1.12.0
[INFO] [stderr]    Compiling cpufeatures v0.2.17
[INFO] [stderr]    Compiling unit-prefix v0.5.1
[INFO] [stderr]    Compiling ryu v1.0.20
[INFO] [stderr]    Compiling sha2 v0.10.9
[INFO] [stderr]    Compiling indicatif v0.18.0
[INFO] [stderr]    Compiling noodles-bam v0.82.0
[INFO] [stderr]    Compiling ctrlc v3.4.7
[INFO] [stderr]    Compiling clap v4.5.41
[INFO] [stderr]    Compiling itertools v0.14.0
[INFO] [stderr]    Compiling noodles v0.100.0
[INFO] [stderr]    Compiling liblzma v0.3.6
[INFO] [stderr]    Compiling zstd v0.13.3
[INFO] [stderr]    Compiling niffler v3.0.0
[INFO] [stderr]    Compiling grz-check v0.2.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 23s
[INFO] running `Command { std: "docker" "inspect" "e3512b144e518bcd2a6d98c7e58ca0e120d3d16a24932a9bbd624d5f59d1453e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e3512b144e518bcd2a6d98c7e58ca0e120d3d16a24932a9bbd624d5f59d1453e", kill_on_drop: false }`
[INFO] [stdout] e3512b144e518bcd2a6d98c7e58ca0e120d3d16a24932a9bbd624d5f59d1453e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] a23c078be2bb923b549c2c52395626beff081c9c8503fe3b60597a5c5f34dbea
[INFO] running `Command { std: "docker" "start" "-a" "a23c078be2bb923b549c2c52395626beff081c9c8503fe3b60597a5c5f34dbea", kill_on_drop: false }`
[INFO] [stderr]    Compiling bitflags v2.9.1
[INFO] [stderr]    Compiling getrandom v0.3.3
[INFO] [stderr]    Compiling rustix v1.0.8
[INFO] [stderr]    Compiling linux-raw-sys v0.9.4
[INFO] [stderr]    Compiling noodles-sam v0.78.0
[INFO] [stderr]    Compiling nix v0.30.1
[INFO] [stderr]    Compiling ctrlc v3.4.7
[INFO] [stderr]    Compiling noodles-bam v0.82.0
[INFO] [stderr]    Compiling tempfile v3.20.0
[INFO] [stderr]    Compiling noodles v0.100.0
[INFO] [stderr]    Compiling grz-check v0.2.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 12.76s
[INFO] running `Command { std: "docker" "inspect" "a23c078be2bb923b549c2c52395626beff081c9c8503fe3b60597a5c5f34dbea", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a23c078be2bb923b549c2c52395626beff081c9c8503fe3b60597a5c5f34dbea", kill_on_drop: false }`
[INFO] [stdout] a23c078be2bb923b549c2c52395626beff081c9c8503fe3b60597a5c5f34dbea
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 2a7865349d5f27d560991eeb354eecfc63af0302d2b4ed6dc516a11428c172fb
[INFO] running `Command { std: "docker" "start" "-a" "2a7865349d5f27d560991eeb354eecfc63af0302d2b4ed6dc516a11428c172fb", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.20s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/grz_check-f97fc1bac0de61bb)
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test checker::tests::test_bam_with_mixed_warnings ... ok
[INFO] [stdout] test checker::tests::test_valid_bam_check ... ok
[INFO] [stdout] test checker::tests::test_bam_with_multiple_secondary_alignments ... ok
[INFO] [stdout] test checker::tests::test_checksum_only ... ok
[INFO] [stdout] test checker::tests::test_multiple_inputs_with_continue_on_error ... ok
[INFO] [stdout] test checker::tests::test_bam_with_multiple_hard_clipped_alignments ... ok
[INFO] [stdout] test checker::tests::test_valid_pair_with_different_lengths ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.09s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "2a7865349d5f27d560991eeb354eecfc63af0302d2b4ed6dc516a11428c172fb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2a7865349d5f27d560991eeb354eecfc63af0302d2b4ed6dc516a11428c172fb", kill_on_drop: false }`
[INFO] [stdout] 2a7865349d5f27d560991eeb354eecfc63af0302d2b4ed6dc516a11428c172fb