[INFO] fetching crate gkl 0.1.1...
[INFO] testing gkl-0.1.1 against master#562dee4820c458d823175268e41601d4c060588a for pr-154210-1
[INFO] extracting crate gkl 0.1.1 into /workspace/builds/worker-6-tc1/source
[INFO] started tweaking crates.io crate gkl 0.1.1
[INFO] finished tweaking crates.io crate gkl 0.1.1
[INFO] tweaked toml for crates.io crate gkl 0.1.1 written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate gkl 0.1.1 on toolchain 562dee4820c458d823175268e41601d4c060588a
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 3 packages to latest compatible versions
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 9338fb24401f8ee69a52c9ed5bc528b8d46ed5f0b97824c3d1825bbd576da8b5
[INFO] running `Command { std: "docker" "start" "-a" "9338fb24401f8ee69a52c9ed5bc528b8d46ed5f0b97824c3d1825bbd576da8b5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "9338fb24401f8ee69a52c9ed5bc528b8d46ed5f0b97824c3d1825bbd576da8b5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9338fb24401f8ee69a52c9ed5bc528b8d46ed5f0b97824c3d1825bbd576da8b5", kill_on_drop: false }`
[INFO] [stdout] 9338fb24401f8ee69a52c9ed5bc528b8d46ed5f0b97824c3d1825bbd576da8b5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 527213dec612264efecd9e183101214eab8cedfc79589a5051ec6dce1b1099e3
[INFO] running `Command { std: "docker" "start" "-a" "527213dec612264efecd9e183101214eab8cedfc79589a5051ec6dce1b1099e3", kill_on_drop: false }`
[INFO] [stderr]    Compiling cc v1.2.59
[INFO] [stderr]    Compiling gkl v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 7.97s
[INFO] running `Command { std: "docker" "inspect" "527213dec612264efecd9e183101214eab8cedfc79589a5051ec6dce1b1099e3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "527213dec612264efecd9e183101214eab8cedfc79589a5051ec6dce1b1099e3", kill_on_drop: false }`
[INFO] [stdout] 527213dec612264efecd9e183101214eab8cedfc79589a5051ec6dce1b1099e3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ac236abcb087a13355d9a6d668f6c5ddf9f88c9ce7ffaf2b24d838f3deaec515
[INFO] running `Command { std: "docker" "start" "-a" "ac236abcb087a13355d9a6d668f6c5ddf9f88c9ce7ffaf2b24d838f3deaec515", kill_on_drop: false }`
[INFO] [stderr]    Compiling gkl v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.45s
[INFO] running `Command { std: "docker" "inspect" "ac236abcb087a13355d9a6d668f6c5ddf9f88c9ce7ffaf2b24d838f3deaec515", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ac236abcb087a13355d9a6d668f6c5ddf9f88c9ce7ffaf2b24d838f3deaec515", kill_on_drop: false }`
[INFO] [stdout] ac236abcb087a13355d9a6d668f6c5ddf9f88c9ce7ffaf2b24d838f3deaec515
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 4885547cbd158a7cc6c20eeb726e748c6b32a8131f27d0900e60a3296d66a30e
[INFO] running `Command { std: "docker" "start" "-a" "4885547cbd158a7cc6c20eeb726e748c6b32a8131f27d0900e60a3296d66a30e", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.07s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/gkl-36f429f52e862ef9)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/pairhmm.rs (/opt/rustwide/target/debug/deps/pairhmm-53d87a8b138ebaa9)
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test simple ... ok
[INFO] [stdout] test data_file ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.17s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/smithwaterman.rs (/opt/rustwide/target/debug/deps/smithwaterman-03634dbd71a5be60)
[INFO] [stdout] 
[INFO] [stdout] running 9 tests
[INFO] [stdout] test odd_no_alignment ... ok
[INFO] [stdout] test degenerate_alignment_with_indels_at_both_ends ... ok
[INFO] [stdout] test substring_match ... ok
[INFO] [stdout] test substring_match_long ... ok
[INFO] [stdout] test two_element ... ok
[INFO] [stdout] test read_aligned_to_ref_complex_alignment ... ok
[INFO] [stdout] test single_element ... ok
[INFO] [stdout] test indels_at_start_and_end ... ok
[INFO] [stdout] test identical_alignments_with_differing_flank_lengths ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests gkl
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "4885547cbd158a7cc6c20eeb726e748c6b32a8131f27d0900e60a3296d66a30e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4885547cbd158a7cc6c20eeb726e748c6b32a8131f27d0900e60a3296d66a30e", kill_on_drop: false }`
[INFO] [stdout] 4885547cbd158a7cc6c20eeb726e748c6b32a8131f27d0900e60a3296d66a30e