[INFO] fetching crate genepred 0.0.11...
[INFO] testing genepred-0.0.11 against master#562dee4820c458d823175268e41601d4c060588a for pr-154210-1
[INFO] extracting crate genepred 0.0.11 into /workspace/builds/worker-7-tc1/source
[INFO] started tweaking crates.io crate genepred 0.0.11
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate genepred 0.0.11
[INFO] tweaked toml for crates.io crate genepred 0.0.11 written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate genepred 0.0.11 on toolchain 562dee4820c458d823175268e41601d4c060588a
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate genepred 0.0.11 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 4e5ba7dcd08a7ad58709494d2ec2994774bff455c777a69c78a10fdf5122797d
[INFO] running `Command { std: "docker" "start" "-a" "4e5ba7dcd08a7ad58709494d2ec2994774bff455c777a69c78a10fdf5122797d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4e5ba7dcd08a7ad58709494d2ec2994774bff455c777a69c78a10fdf5122797d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4e5ba7dcd08a7ad58709494d2ec2994774bff455c777a69c78a10fdf5122797d", kill_on_drop: false }`
[INFO] [stdout] 4e5ba7dcd08a7ad58709494d2ec2994774bff455c777a69c78a10fdf5122797d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 287d43194cfb0675c2f5338a6d4648cf1d40d0cd759f37fdf2c7df7956772a36
[INFO] running `Command { std: "docker" "start" "-a" "287d43194cfb0675c2f5338a6d4648cf1d40d0cd759f37fdf2c7df7956772a36", kill_on_drop: false }`
[INFO] [stderr]    Compiling genepred v0.0.11 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1.96s
[INFO] running `Command { std: "docker" "inspect" "287d43194cfb0675c2f5338a6d4648cf1d40d0cd759f37fdf2c7df7956772a36", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "287d43194cfb0675c2f5338a6d4648cf1d40d0cd759f37fdf2c7df7956772a36", kill_on_drop: false }`
[INFO] [stdout] 287d43194cfb0675c2f5338a6d4648cf1d40d0cd759f37fdf2c7df7956772a36
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 325c5912d399f4c7736056aff9160659c4512c87469ec8bdab335c3a65deaac9
[INFO] running `Command { std: "docker" "start" "-a" "325c5912d399f4c7736056aff9160659c4512c87469ec8bdab335c3a65deaac9", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.177
[INFO] [stderr]    Compiling getrandom v0.3.4
[INFO] [stderr]    Compiling rustix v1.1.2
[INFO] [stderr]    Compiling tempfile v3.23.0
[INFO] [stderr]    Compiling genepred v0.0.11 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 5.15s
[INFO] running `Command { std: "docker" "inspect" "325c5912d399f4c7736056aff9160659c4512c87469ec8bdab335c3a65deaac9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "325c5912d399f4c7736056aff9160659c4512c87469ec8bdab335c3a65deaac9", kill_on_drop: false }`
[INFO] [stdout] 325c5912d399f4c7736056aff9160659c4512c87469ec8bdab335c3a65deaac9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] e7332c1cfb4ef2905efabd63c534249a34a6234e4ef64891c4d504ff7a774d40
[INFO] running `Command { std: "docker" "start" "-a" "e7332c1cfb4ef2905efabd63c534249a34a6234e4ef64891c4d504ff7a774d40", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.09s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/genepred-d0f9d67ecd93f16f)
[INFO] [stdout] 
[INFO] [stderr]      Running tests/reader.rs (/opt/rustwide/target/debug/deps/reader-70e40c2d1e93693a)
[INFO] [stdout] running 3 tests
[INFO] [stdout] test gxf::tests::parse_empty_attributes ... ok
[INFO] [stdout] test gxf::tests::parse_gtf_attributes ... ok
[INFO] [stdout] test gxf::tests::parse_gff_attributes ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 15 tests
[INFO] [stdout] test test_reader_bed12_from_path ... ok
[INFO] [stdout] test test_reader_bed3_from_path ... ok
[INFO] [stdout] test test_reader_from_string_bed12 ... ok
[INFO] [stdout] test test_reader_bed12_with_additional_fields ... ok
[INFO] [stdout] test test_reader_bed6_from_path ... ok
[INFO] [stdout] test test_reader_from_string_bed6 ... ok
[INFO] [stdout] test test_reader_empty_input ... ok
[INFO] [stdout] test test_reader_from_string_bed4 ... ok
[INFO] [stdout] test test_reader_gff_from_path ... ok
[INFO] [stdout] test test_reader_invalid_line ... ok
[INFO] [stdout] test test_reader_gxf_allows_single_base_feature ... ok
[INFO] [stdout] test test_reader_gxf_from_path ... ok
[INFO] [stdout] test test_reader_gxf_skips_missing_parent_attribute ... ok
[INFO] [stdout] test test_reader_from_string_bed3 ... ok
[INFO] [stdout] test test_reader_gxf_negative_stop_codon_extends_thick_start ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/struct.rs (/opt/rustwide/target/debug/deps/struct-ab37d3a0d112eddf)
[INFO] [stdout] 
[INFO] [stdout] running 30 tests
[INFO] [stdout] test test_genepred_coding_exons_cds_length ... ok
[INFO] [stdout] test test_genepred_exon_intron_count ... ok
[INFO] [stdout] test test_genepred_exon_overlaps ... ok
[INFO] [stdout] test test_genepred_exonic_intronic_length ... ok
[INFO] [stdout] test test_genepred_exons ... ok
[INFO] [stdout] test test_genepred_from_bed12 ... ok
[INFO] [stdout] test test_genepred_from_bed3 ... ok
[INFO] [stdout] test test_genepred_from_bed4 ... ok
[INFO] [stdout] test test_extra_value_conversion_and_empty_helpers ... ok
[INFO] [stdout] test test_genepred_from_bed6 ... ok
[INFO] [stdout] test test_genepred_from_coords ... ok
[INFO] [stdout] test test_genepred_introns ... ok
[INFO] [stdout] test test_genepred_len_is_empty ... ok
[INFO] [stdout] test test_genepred_overlaps ... ok
[INFO] [stdout] test test_genepred_setters ... ok
[INFO] [stdout] test test_genepred_strand_aware_utrs ... ok
[INFO] [stdout] test test_genepred_to_bed_layouts ... ok
[INFO] [stdout] test test_genepred_to_bed_with_additional_fields ... ok
[INFO] [stdout] test test_genepred_to_gtf_with_mapping_and_additional_fields ... ok
[INFO] [stdout] test test_genepred_to_gxf_mapping_uses_name_key ... ok
[INFO] [stdout] test test_genepred_get_extra ... ok
[INFO] [stdout] test test_genepred_utr_exons_and_utr_length ... ok
[INFO] [stdout] test test_genepred_to_gff_standard_hierarchy ... ok
[INFO] [stdout] test test_genepred_utr_exons_include_boundary_touching_exons ... ok
[INFO] [stdout] test test_genepred_to_gxf_uses_strand_aware_exon_numbers ... ok
[INFO] [stdout] test test_genepred_unnest_extras ... ok
[INFO] [stdout] test test_genepred_display ... ok
[INFO] [stdout] test test_genepred_to_bed_with_additional_fields_panics_when_missing - should panic ... ok
[INFO] [stdout] test test_genepred_to_gxf_panics_for_bed_layout - should panic ... ok
[INFO] [stdout] test test_genepred_to_gxf_with_additional_fields_panics_when_missing_numeric_extras - should panic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 30 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/writer.rs (/opt/rustwide/target/debug/deps/writer-958ce10ea68e1269)
[INFO] [stdout] 
[INFO] [stdout] running 10 tests
[INFO] [stdout] test write_bed3_allowlist_filters_extras ... ok
[INFO] [stdout] test write_bed3_can_disable_numeric_extras ... ok
[INFO] [stdout] test gtf_to_bed_includes_codons_in_cds_bounds ... ok
[INFO] [stdout] test write_bed3_orders_numeric_extras ... ok
[INFO] [stdout] test write_gff_reverse_strand_with_phases ... ok
[INFO] [stdout] test write_bed3_skips_non_numeric_by_default ... ok
[INFO] [stdout] test write_gtf_allowlist_filters_attributes ... ok
[INFO] [stdout] test write_gtf_from_genepred ... ok
[INFO] [stdout] test write_gtf_gene_transcript_first ... ok
[INFO] [stdout] test write_bed12_preserves_blocks ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 10 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests genepred
[INFO] [stdout] 
[INFO] [stdout] running 56 tests
[INFO] [stdout] test src/bed.rs - bed::Rgb::parse (line 47) ... ignored
[INFO] [stdout] test src/bed.rs - bed::Bed12 (line 610) ... ok
[INFO] [stdout] test src/bed.rs - bed::Bed4 (line 272) ... ok
[INFO] [stdout] test src/bed.rs - bed::Rgb (line 22) ... ok
[INFO] [stdout] test src/bed.rs - bed::Bed3 (line 228) ... ok
[INFO] [stdout] test src/bed.rs - bed::Bed12::from_fields (line 686) ... ok
[INFO] [stdout] test src/genepred.rs - genepred::ExtraValue::into_scalar (line 161) ... ok
[INFO] [stdout] test src/genepred.rs - genepred::GenePred::coding_exons (line 569) ... ok
[INFO] [stdout] test src/bed.rs - bed::Bed8 (line 424) ... ok
[INFO] [stdout] test src/bed.rs - bed::Bed5 (line 318) ... ok
[INFO] [stdout] test src/gxf.rs - gxf::open_stream (line 141) ... ignored
[INFO] [stdout] test src/bed.rs - bed::Bed9 (line 490) ... ok
[INFO] [stdout] test src/lib.rs - (line 18) ... ignored
[INFO] [stdout] test src/bed.rs - bed::BedFormat (line 106) ... ok
[INFO] [stdout] test src/reader.rs - reader::Reader (line 712) ... ignored
[INFO] [stdout] test src/reader.rs - reader::Reader<R>::additional_fields (line 1021) ... ignored
[INFO] [stdout] test src/reader.rs - reader::Reader<R>::builder (line 746) ... ignored
[INFO] [stdout] test src/reader.rs - reader::Reader<R>::current_line (line 1039) ... ignored
[INFO] [stdout] test src/reader.rs - reader::Reader<R>::fill_buffer (line 1315) ... ignored
[INFO] [stdout] test src/reader.rs - reader::Reader<R>::from_path (line 770) ... ignored
[INFO] [stdout] test src/reader.rs - reader::Reader<R>::from_path_with_custom_fields (line 791) ... ignored
[INFO] [stdout] test src/reader.rs - reader::Reader<R>::from_preloaded_records (line 887) ... ignored
[INFO] [stdout] test src/reader.rs - reader::Reader<R>::from_reader (line 816) ... ignored
[INFO] [stdout] test src/reader.rs - reader::Reader<R>::from_stream (line 840) ... ignored
[INFO] [stdout] test src/reader.rs - reader::Reader<R>::next_record (line 1228) ... ignored
[INFO] [stdout] test src/reader.rs - reader::Reader<R>::records (line 1057) ... ignored
[INFO] [stdout] test src/reader.rs - reader::ReaderBuilder (line 368) ... ignored
[INFO] [stdout] test src/reader.rs - reader::_parse_line (line 1724) ... ignored
[INFO] [stdout] test src/reader.rs - reader::build_extra_keys (line 1890) ... ignored
[INFO] [stdout] test src/reader.rs - reader::parse_line_bytes (line 1759) ... ignored
[INFO] [stdout] test src/strand.rs - strand::Strand::parse (line 36) ... ignored
[INFO] [stdout] test src/writer.rs - writer::build_attributes (line 876) ... ignored
[INFO] [stdout] test src/writer.rs - writer::coding_span (line 849) ... ignored
[INFO] [stdout] test src/writer.rs - writer::compute_cds_segments (line 726) ... ignored
[INFO] [stdout] test src/writer.rs - writer::derive_exons (line 530) ... ignored
[INFO] [stdout] test src/writer.rs - writer::render_gff_attributes (line 1001) ... ignored
[INFO] [stdout] test src/writer.rs - writer::render_gtf_attributes (line 965) ... ignored
[INFO] [stdout] test src/writer.rs - writer::render_value (line 1112) ... ignored
[INFO] [stdout] test src/writer.rs - writer::start_codon_interval (line 776) ... ignored
[INFO] [stdout] test src/writer.rs - writer::stop_codon_interval (line 813) ... ignored
[INFO] [stdout] test src/writer.rs - writer::strand_byte (line 1078) ... ignored
[INFO] [stdout] test src/genepred.rs - genepred::ExtraValue::into_inner (line 139) ... ok
[INFO] [stdout] test src/bed.rs - bed::Bed9::from_fields (line 555) ... ok
[INFO] [stdout] test src/genepred.rs - genepred::ExtraValue::first (line 61) ... ok
[INFO] [stdout] test src/bed.rs - bed::Bed6 (line 368) ... ok
[INFO] [stdout] test src/genepred.rs - genepred::ExtraValue::iter (line 117) ... ok
[INFO] [stdout] test src/genepred.rs - genepred::ExtraValue::into_array (line 183) ... ok
[INFO] [stdout] test src/gxf.rs - gxf::parse_attributes (line 707) ... ok
[INFO] [stdout] test src/genepred.rs - genepred::GenePred::overlaps (line 783) ... ok
[INFO] [stdout] test src/genepred.rs - genepred::ExtraValue::push (line 85) ... ok
[INFO] [stdout] test src/strand.rs - strand::Strand (line 11) ... ok
[INFO] [stdout] test src/genepred.rs - genepred::GenePred::from_coords (line 266) ... ok
[INFO] [stdout] test src/genepred.rs - genepred::GenePred::exons (line 471) ... ok
[INFO] [stdout] test src/genepred.rs - genepred::GenePred::introns (line 515) ... ok
[INFO] [stdout] test src/genepred.rs - genepred::GenePred::exon_overlaps (line 800) ... ok
[INFO] [stdout] test src/genepred.rs - genepred::GenePred::unnest_extras (line 742) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 26 passed; 0 failed; 30 ignored; 0 measured; 0 filtered out; finished in 1.84s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "e7332c1cfb4ef2905efabd63c534249a34a6234e4ef64891c4d504ff7a774d40", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e7332c1cfb4ef2905efabd63c534249a34a6234e4ef64891c4d504ff7a774d40", kill_on_drop: false }`
[INFO] [stdout] e7332c1cfb4ef2905efabd63c534249a34a6234e4ef64891c4d504ff7a774d40