[INFO] fetching crate fxtools 0.2.39...
[INFO] testing fxtools-0.2.39 against master#562dee4820c458d823175268e41601d4c060588a for pr-154210-1
[INFO] extracting crate fxtools 0.2.39 into /workspace/builds/worker-1-tc1/source
[INFO] started tweaking crates.io crate fxtools 0.2.39
[INFO] finished tweaking crates.io crate fxtools 0.2.39
[INFO] tweaked toml for crates.io crate fxtools 0.2.39 written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate fxtools 0.2.39 on toolchain 562dee4820c458d823175268e41601d4c060588a
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate fxtools 0.2.39 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 8fefa559dea3cb1e009881028542067dc47968c7789836d88cf8b6186e85ce4f
[INFO] running `Command { std: "docker" "start" "-a" "8fefa559dea3cb1e009881028542067dc47968c7789836d88cf8b6186e85ce4f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "8fefa559dea3cb1e009881028542067dc47968c7789836d88cf8b6186e85ce4f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8fefa559dea3cb1e009881028542067dc47968c7789836d88cf8b6186e85ce4f", kill_on_drop: false }`
[INFO] [stdout] 8fefa559dea3cb1e009881028542067dc47968c7789836d88cf8b6186e85ce4f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c414f5b2b50fd0a754396776c9cc90db063a8cbbc5f56e5388a67ff398807773
[INFO] running `Command { std: "docker" "start" "-a" "c414f5b2b50fd0a754396776c9cc90db063a8cbbc5f56e5388a67ff398807773", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.147
[INFO] [stderr]    Compiling autocfg v1.1.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.86
[INFO] [stderr]    Compiling unicode-ident v1.0.11
[INFO] [stderr]    Compiling pkg-config v0.3.31
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling memchr v2.7.4
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]    Compiling thiserror v1.0.44
[INFO] [stderr]    Compiling adler2 v2.0.0
[INFO] [stderr]    Compiling allocator-api2 v0.2.18
[INFO] [stderr]    Compiling zstd-safe v7.2.1
[INFO] [stderr]    Compiling version_check v0.9.4
[INFO] [stderr]    Compiling rustix v0.38.4
[INFO] [stderr]    Compiling serde v1.0.210
[INFO] [stderr]    Compiling scopeguard v1.2.0
[INFO] [stderr]    Compiling bitflags v2.3.3
[INFO] [stderr]    Compiling linux-raw-sys v0.4.3
[INFO] [stderr]    Compiling futures-core v0.3.28
[INFO] [stderr]    Compiling utf8parse v0.2.1
[INFO] [stderr]    Compiling once_cell v1.18.0
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[INFO] [stderr]    Compiling aho-corasick v1.1.1
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[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling zerocopy v0.7.35
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[INFO] [stderr]    Compiling anyhow v1.0.89
[INFO] [stderr]    Compiling colorchoice v1.0.0
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[INFO] [stderr]    Compiling hashbrown v0.15.0
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[INFO] [stderr]    Compiling matrixmultiply v0.3.7
[INFO] [stderr]    Compiling jobserver v0.1.32
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[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling cc v1.0.79
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[INFO] [stderr]    Compiling nanorand v0.7.0
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[INFO] [stderr]    Compiling clap_lex v0.7.0
[INFO] [stderr]    Compiling syn v2.0.72
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling lazy_static v1.4.0
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[INFO] [stderr]    Compiling itoa v1.0.9
[INFO] [stderr]    Compiling colored v2.0.4
[INFO] [stderr]    Compiling itertools v0.13.0
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[INFO] [stderr]    Compiling core_affinity v0.8.0
[INFO] [stderr]    Compiling hashbrown v0.14.5
[INFO] [stderr]    Compiling clap_builder v4.5.20
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling csv-core v0.1.11
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling bytes v1.4.0
[INFO] [stderr]    Compiling regex-automata v0.4.8
[INFO] [stderr]    Compiling num-complex v0.4.3
[INFO] [stderr]    Compiling noisy_float v0.2.0
[INFO] [stderr]    Compiling zstd-sys v2.0.13+zstd.1.5.6
[INFO] [stderr]    Compiling liblzma-sys v0.3.9
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling spinoff v0.8.0
[INFO] [stderr]    Compiling disambiseq v0.1.11
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling bzip2 v0.4.4
[INFO] [stderr]    Compiling thiserror-impl v1.0.44
[INFO] [stderr]    Compiling pin-project-internal v1.1.2
[INFO] [stderr]    Compiling serde_derive v1.0.210
[INFO] [stderr]    Compiling clap_derive v4.5.18
[INFO] [stderr]    Compiling liblzma v0.3.4
[INFO] [stderr]    Compiling bstr v1.10.0
[INFO] [stderr]    Compiling regex v1.11.0
[INFO] [stderr]    Compiling ndarray-stats v0.6.0
[INFO] [stderr]    Compiling bgzip v0.3.1
[INFO] [stderr]    Compiling clap v4.5.20
[INFO] [stderr]    Compiling pin-project v1.1.2
[INFO] [stderr]    Compiling flume v0.10.14
[INFO] [stderr]    Compiling gzp v0.11.3
[INFO] [stderr]    Compiling zstd v0.13.2
[INFO] [stderr]    Compiling niffler v2.6.0
[INFO] [stderr]    Compiling fxread v0.2.13
[INFO] [stderr]    Compiling csv v1.3.0
[INFO] [stderr]    Compiling fxtools v0.2.39 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 31.77s
[INFO] running `Command { std: "docker" "inspect" "c414f5b2b50fd0a754396776c9cc90db063a8cbbc5f56e5388a67ff398807773", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c414f5b2b50fd0a754396776c9cc90db063a8cbbc5f56e5388a67ff398807773", kill_on_drop: false }`
[INFO] [stdout] c414f5b2b50fd0a754396776c9cc90db063a8cbbc5f56e5388a67ff398807773
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] df510e29bfaf8f6942d65d00e0835280bf300947a152e85354bc3dc2b66c04bf
[INFO] running `Command { std: "docker" "start" "-a" "df510e29bfaf8f6942d65d00e0835280bf300947a152e85354bc3dc2b66c04bf", kill_on_drop: false }`
[INFO] [stderr]    Compiling fxtools v0.2.39 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 2.99s
[INFO] running `Command { std: "docker" "inspect" "df510e29bfaf8f6942d65d00e0835280bf300947a152e85354bc3dc2b66c04bf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "df510e29bfaf8f6942d65d00e0835280bf300947a152e85354bc3dc2b66c04bf", kill_on_drop: false }`
[INFO] [stdout] df510e29bfaf8f6942d65d00e0835280bf300947a152e85354bc3dc2b66c04bf
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] d44c9d2bc8215af40645897360c6e474d410e1f87b6ff30bd2b9bfb71056f98c
[INFO] running `Command { std: "docker" "start" "-a" "d44c9d2bc8215af40645897360c6e474d410e1f87b6ff30bd2b9bfb71056f98c", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.13s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/fxtools-fb125ac1f58c9ace)
[INFO] [stdout] 
[INFO] [stdout] running 63 tests
[INFO] [stdout] test commands::clip::test::fasta_clip_range_left ... ok
[INFO] [stdout] test commands::clip::test::fasta_clip_range_right ... ok
[INFO] [stdout] test commands::clip::test::fastq_clip_range_both ... ok
[INFO] [stdout] test commands::clip::test::fastq_clip_range_right ... ok
[INFO] [stdout] test commands::clip::test::fastq_no_clip ... ok
[INFO] [stdout] test commands::clip::test::fastq_clip_right ... ok
[INFO] [stdout] test commands::extract::testing::test_border ... ok
[INFO] [stdout] test commands::extract::testing::test_high_entropy_positions ... ok
[INFO] [stdout] test commands::extract::testing::test_longest_contiguous ... ok
[INFO] [stdout] test commands::extract::testing::test_position_counts ... ok
[INFO] [stdout] test commands::extract::testing::test_position_frequency ... ok
[INFO] [stdout] test commands::extract::testing::test_positional_entropy_none ... ok
[INFO] [stdout] test commands::extract::testing::test_positional_entropy_high ... ok
[INFO] [stdout] test commands::filter::test::test_fasta_header_inverse ... ok
[INFO] [stdout] test commands::filter::test::test_fasta_sequence ... ok
[INFO] [stdout] test commands::filter::test::test_fasta_sequence_inverse ... ok
[INFO] [stdout] test commands::filter::test::test_fastq_header_inverse ... ok
[INFO] [stdout] test commands::filter::test::test_fastq_sequence ... ok
[INFO] [stdout] test commands::filter::test::test_fastq_sequence_inverse ... ok
[INFO] [stdout] test commands::fix::test::run_fasta_nochange ... ok
[INFO] [stdout] test commands::fix::test::run_fastq ... ok
[INFO] [stdout] test commands::clip::test::fasta_clip_right ... ok
[INFO] [stdout] test commands::count::test::test_count_fasta ... ok
[INFO] [stdout] test commands::fix::test::run_fasta ... ok
[INFO] [stdout] test commands::count::test::test_count_fastq ... ok
[INFO] [stdout] test commands::extract::testing::test_base_map ... ok
[INFO] [stdout] test commands::clip::test::fasta_no_clip ... ok
[INFO] [stdout] test commands::clip::test::test_parse_range ... ok
[INFO] [stdout] test commands::clip::test::fastq_clip_left ... ok
[INFO] [stdout] test commands::fix::test::run_invalid_fastq_allow_invalid ... ok
[INFO] [stdout] test commands::sort::testing::sort_paired_fasta_by_r1 ... ok
[INFO] [stdout] test commands::sgrna_table::test::table_fasta ... ok
[INFO] [stdout] test commands::sort::testing::sort_paired_fasta_by_r2 ... ok
[INFO] [stdout] test commands::reverse::test::run_fasta ... ok
[INFO] [stdout] test commands::reverse::test::run_fastq ... ok
[INFO] [stdout] test commands::sgrna_table::test::table_fastq ... ok
[INFO] [stdout] test commands::sort::testing::sort_paired_fastq_by_r1 ... ok
[INFO] [stdout] test commands::t2g::testing::run_fasta_dot_gene_id ... ok
[INFO] [stdout] test commands::sort::testing::sort_paired_fastq_by_r2 ... ok
[INFO] [stdout] test commands::t2g::testing::run_fasta_nodot_gene_symbol ... ok
[INFO] [stdout] test commands::sort::testing::sort_single_fasta ... ok
[INFO] [stdout] test commands::sort::testing::sort_single_fastq ... ok
[INFO] [stdout] test commands::t2g::testing::run_fasta_dot_missing_gene_name ... ok
[INFO] [stdout] test commands::unique::test::unique_fastq ... ok
[INFO] [stdout] test commands::upper::test::run_fasta ... ok
[INFO] [stdout] test commands::clip::test::fasta_clip_left ... ok
[INFO] [stdout] test commands::upper::test::run_invalid_fasta_allow_invalid ... ok
[INFO] [stdout] test commands::upper::test::run_invalid_fastq_allow_invalid ... ok
[INFO] [stdout] test commands::filter::test::test_fasta_header ... ok
[INFO] [stdout] test commands::t2g::testing::run_fasta_nodot_missing_gene_name ... ok
[INFO] [stdout] test commands::clip::test::fastq_clip_range_left ... ok
[INFO] [stdout] test commands::filter::test::test_fastq_header ... ok
[INFO] [stdout] test commands::fix::test::run_fastq_nochange ... ok
[INFO] [stdout] test commands::fix::test::run_invalid_fasta_allow_invalid ... ok
[INFO] [stdout] test commands::t2g::testing::run_fasta_nodot_gene_id ... ok
[INFO] [stdout] test commands::unique::test::unique_fasta ... ok
[INFO] [stdout] test commands::upper::test::run_fastq ... ok
[INFO] [stdout] test commands::reverse::test::run_invalid_fasta - should panic ... ok
[INFO] [stdout] test commands::reverse::test::run_invalid_fastq - should panic ... ok
[INFO] [stdout] test commands::upper::test::run_invalid_fasta - should panic ... ok
[INFO] [stdout] test commands::upper::test::run_invalid_fastq - should panic ... ok
[INFO] [stdout] test commands::clip::test::fasta_clip_range_both ... ok
[INFO] [stdout] test commands::extract::testing::test_contiguous ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 63 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.11s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "d44c9d2bc8215af40645897360c6e474d410e1f87b6ff30bd2b9bfb71056f98c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d44c9d2bc8215af40645897360c6e474d410e1f87b6ff30bd2b9bfb71056f98c", kill_on_drop: false }`
[INFO] [stdout] d44c9d2bc8215af40645897360c6e474d410e1f87b6ff30bd2b9bfb71056f98c