[INFO] cloning repository https://github.com/omicstools/seqrs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/omicstools/seqrs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fomicstools%2Fseqrs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fomicstools%2Fseqrs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 0781ea7efc509459c7184d7eab1880951340615f
[INFO] testing omicstools/seqrs against master#562dee4820c458d823175268e41601d4c060588a for pr-154210-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fomicstools%2Fseqrs" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/omicstools/seqrs
[INFO] finished tweaking git repo https://github.com/omicstools/seqrs
[INFO] tweaked toml for git repo https://github.com/omicstools/seqrs written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/omicstools/seqrs on toolchain 562dee4820c458d823175268e41601d4c060588a
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/omicstools/seqrs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded float-cmp v0.8.0
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded escargot v0.3.1
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded rand_distr v0.4.3
[INFO] [stderr]   Downloaded ferris-says v0.3.2
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded assert_cmd v0.10.2
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded predicates v1.0.8
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded derefable v0.1.0
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded kseq v0.5.3
[INFO] [stderr]   Downloaded bio v3.0.0
[INFO] [stderr]   Downloaded libz-sys v1.1.23
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 971d541a027b5e54d067be4b9bd157dd2790d5ab07916be6d5c8a155b6e25714
[INFO] running `Command { std: "docker" "start" "-a" "971d541a027b5e54d067be4b9bd157dd2790d5ab07916be6d5c8a155b6e25714", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "971d541a027b5e54d067be4b9bd157dd2790d5ab07916be6d5c8a155b6e25714", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "971d541a027b5e54d067be4b9bd157dd2790d5ab07916be6d5c8a155b6e25714", kill_on_drop: false }`
[INFO] [stdout] 971d541a027b5e54d067be4b9bd157dd2790d5ab07916be6d5c8a155b6e25714
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 647e9657880a7ffb098156cf72023f9696f931d25180e6018463cd67748ba62f
[INFO] running `Command { std: "docker" "start" "-a" "647e9657880a7ffb098156cf72023f9696f931d25180e6018463cd67748ba62f", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.103
[INFO] [stderr]    Compiling quote v1.0.42
[INFO] [stderr]    Compiling unicode-ident v1.0.22
[INFO] [stderr]    Compiling libm v0.2.15
[INFO] [stderr]    Compiling libc v0.2.178
[INFO] [stderr]    Compiling memchr v2.7.6
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling zerocopy v0.8.31
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling find-msvc-tools v0.1.5
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling cc v1.2.49
[INFO] [stderr]    Compiling paste v1.0.15
[INFO] [stderr]    Compiling bytemuck v1.24.0
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling syn v2.0.111
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling getrandom v0.2.16
[INFO] [stderr]    Compiling safe_arch v0.7.4
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling cmake v0.1.54
[INFO] [stderr]    Compiling aho-corasick v1.1.4
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling num-integer v0.1.46
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[INFO] [stderr]    Compiling libz-sys v1.1.23
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling rand_chacha v0.3.1
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[INFO] [stderr]    Compiling rand v0.8.5
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[INFO] [stderr]    Compiling syn v0.15.44
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[INFO] [stderr]    Compiling bv v0.11.1
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[INFO] [stderr]    Compiling proc-macro-error-attr2 v2.0.0
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[INFO] [stderr]    Compiling smawk v0.3.2
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[INFO] [stderr]    Compiling clap_lex v0.7.6
[INFO] [stderr]    Compiling fixedbitset v0.5.7
[INFO] [stderr]    Compiling textwrap v0.16.2
[INFO] [stderr]    Compiling petgraph v0.8.3
[INFO] [stderr]    Compiling clap_builder v4.5.53
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling csv v1.4.0
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling regex v1.12.2
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling thiserror-impl v2.0.17
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]    Compiling clap_derive v4.5.49
[INFO] [stderr]    Compiling getset v0.1.6
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling plotters-svg v0.3.7
[INFO] [stderr]    Compiling console v0.15.11
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling multimap v0.10.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling itertools v0.14.0
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v5.1.0
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling number_prefix v0.4.0
[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling smallvec v1.15.1
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling unicode-width v0.1.14
[INFO] [stderr]    Compiling clap v4.5.53
[INFO] [stderr]    Compiling indicatif v0.17.11
[INFO] [stderr]    Compiling rayon v1.11.0
[INFO] [stderr]    Compiling ferris-says v0.3.2
[INFO] [stderr]    Compiling plotters v0.3.7
[INFO] [stderr]    Compiling flate2 v1.1.5
[INFO] [stderr]    Compiling kseq v0.5.3
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v3.0.0
[INFO] [stderr]    Compiling seqrs v1.0.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 04s
[INFO] running `Command { std: "docker" "inspect" "647e9657880a7ffb098156cf72023f9696f931d25180e6018463cd67748ba62f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "647e9657880a7ffb098156cf72023f9696f931d25180e6018463cd67748ba62f", kill_on_drop: false }`
[INFO] [stdout] 647e9657880a7ffb098156cf72023f9696f931d25180e6018463cd67748ba62f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] cac73e47e208ecfcb9b83bc919744a33ed16516356021e2d327fc916abfa7772
[INFO] running `Command { std: "docker" "start" "-a" "cac73e47e208ecfcb9b83bc919744a33ed16516356021e2d327fc916abfa7772", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde_json v1.0.145
[INFO] [stderr]    Compiling escargot v0.3.1
[INFO] [stderr]    Compiling predicates-core v1.0.9
[INFO] [stderr]    Compiling float-cmp v0.8.0
[INFO] [stderr]    Compiling difference v2.0.0
[INFO] [stderr]    Compiling termtree v0.5.1
[INFO] [stderr]    Compiling normalize-line-endings v0.3.0
[INFO] [stderr]    Compiling predicates-tree v1.0.12
[INFO] [stderr]    Compiling predicates v1.0.8
[INFO] [stderr]    Compiling assert_cmd v0.10.2
[INFO] [stderr]    Compiling seqrs v1.0.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 4.81s
[INFO] running `Command { std: "docker" "inspect" "cac73e47e208ecfcb9b83bc919744a33ed16516356021e2d327fc916abfa7772", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "cac73e47e208ecfcb9b83bc919744a33ed16516356021e2d327fc916abfa7772", kill_on_drop: false }`
[INFO] [stdout] cac73e47e208ecfcb9b83bc919744a33ed16516356021e2d327fc916abfa7772
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] babbf78f2ee5b53833416d3d9ac6e576d85135850fee661518677d6d0ec1670d
[INFO] running `Command { std: "docker" "start" "-a" "babbf78f2ee5b53833416d3d9ac6e576d85135850fee661518677d6d0ec1670d", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.27s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/seqrs-58e16831154aa1ea)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "babbf78f2ee5b53833416d3d9ac6e576d85135850fee661518677d6d0ec1670d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "babbf78f2ee5b53833416d3d9ac6e576d85135850fee661518677d6d0ec1670d", kill_on_drop: false }`
[INFO] [stdout] babbf78f2ee5b53833416d3d9ac6e576d85135850fee661518677d6d0ec1670d