[INFO] cloning repository https://github.com/geokousis/Sanger-Analysis-Tool
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/geokousis/Sanger-Analysis-Tool" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgeokousis%2FSanger-Analysis-Tool", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgeokousis%2FSanger-Analysis-Tool'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 3046f27057965f26822231e8f37aef9711042cd9
[INFO] testing geokousis/Sanger-Analysis-Tool against master#562dee4820c458d823175268e41601d4c060588a for pr-154210-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgeokousis%2FSanger-Analysis-Tool" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/geokousis/Sanger-Analysis-Tool
[INFO] finished tweaking git repo https://github.com/geokousis/Sanger-Analysis-Tool
[INFO] tweaked toml for git repo https://github.com/geokousis/Sanger-Analysis-Tool written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/geokousis/Sanger-Analysis-Tool on toolchain 562dee4820c458d823175268e41601d4c060588a
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/geokousis/Sanger-Analysis-Tool already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 25cd903ab11509217cc5c07805b7dbba34647e381eb46f5cc9daa9ecfa291916
[INFO] running `Command { std: "docker" "start" "-a" "25cd903ab11509217cc5c07805b7dbba34647e381eb46f5cc9daa9ecfa291916", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "25cd903ab11509217cc5c07805b7dbba34647e381eb46f5cc9daa9ecfa291916", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "25cd903ab11509217cc5c07805b7dbba34647e381eb46f5cc9daa9ecfa291916", kill_on_drop: false }`
[INFO] [stdout] 25cd903ab11509217cc5c07805b7dbba34647e381eb46f5cc9daa9ecfa291916
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 8b0eab155030d75ad27ce252ed32ff6afb6b671f184586a4ea1a342cd8f9b711
[INFO] running `Command { std: "docker" "start" "-a" "8b0eab155030d75ad27ce252ed32ff6afb6b671f184586a4ea1a342cd8f9b711", kill_on_drop: false }`
[INFO] [stderr]    Compiling N-credible v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1.68s
[INFO] running `Command { std: "docker" "inspect" "8b0eab155030d75ad27ce252ed32ff6afb6b671f184586a4ea1a342cd8f9b711", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8b0eab155030d75ad27ce252ed32ff6afb6b671f184586a4ea1a342cd8f9b711", kill_on_drop: false }`
[INFO] [stdout] 8b0eab155030d75ad27ce252ed32ff6afb6b671f184586a4ea1a342cd8f9b711
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 82245107e84d0bc7fbe476989c4e7a444cade533eea225389af94236fbf032e0
[INFO] running `Command { std: "docker" "start" "-a" "82245107e84d0bc7fbe476989c4e7a444cade533eea225389af94236fbf032e0", kill_on_drop: false }`
[INFO] [stderr]    Compiling N-credible v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1.56s
[INFO] running `Command { std: "docker" "inspect" "82245107e84d0bc7fbe476989c4e7a444cade533eea225389af94236fbf032e0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "82245107e84d0bc7fbe476989c4e7a444cade533eea225389af94236fbf032e0", kill_on_drop: false }`
[INFO] [stdout] 82245107e84d0bc7fbe476989c4e7a444cade533eea225389af94236fbf032e0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+562dee4820c458d823175268e41601d4c060588a" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] c50ce6f9a5c8e0fca430412a4c8badb504d78b46d2398f94cb1528d07d776486
[INFO] running `Command { std: "docker" "start" "-a" "c50ce6f9a5c8e0fca430412a4c8badb504d78b46d2398f94cb1528d07d776486", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.03s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/N_credible-4fe49b12fad9e7f2)
[INFO] [stdout] 
[INFO] [stdout] running 15 tests
[INFO] [stdout] test tests::candidate_windows_find_expected_region ... ok
[INFO] [stdout] test tests::best_reference_is_selected_per_query ... ok
[INFO] [stdout] test tests::genbank_parser_reads_record_and_features ... ok
[INFO] [stdout] test tests::indels_are_reported ... ok
[INFO] [stdout] test tests::iupac_het_variant_is_reported_as_0_1 ... ok
[INFO] [stdout] test tests::iupac_matching_works ... ok
[INFO] [stdout] test tests::ambiguous_iupac_is_not_counted_as_mismatch ... ok
[INFO] [stdout] test tests::exhaustive_mode_bypasses_seeding ... ok
[INFO] [stdout] test tests::effect_vcf_contains_only_effect_sites ... ok
[INFO] [stdout] test tests::fasta_parser_reads_multiple_records ... ok
[INFO] [stdout] test tests::reverse_complement_works ... ok
[INFO] [stdout] test tests::non_iupac_mismatch_is_reported_as_homozygous_alt ... ok
[INFO] [stdout] test tests::merged_vcf_contains_all_samples_per_site ... ok
[INFO] [stdout] test tests::semiglobal_maps_query_to_reference_window ... ok
[INFO] [stdout] test tests::soft_clip_query_ends_changes_terminal_insertions_to_s ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "c50ce6f9a5c8e0fca430412a4c8badb504d78b46d2398f94cb1528d07d776486", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c50ce6f9a5c8e0fca430412a4c8badb504d78b46d2398f94cb1528d07d776486", kill_on_drop: false }`
[INFO] [stdout] c50ce6f9a5c8e0fca430412a4c8badb504d78b46d2398f94cb1528d07d776486