[INFO] fetching crate ugv 0.1.2... [INFO] checking ugv-0.1.2 against master#8a703520e80d87d4423c01f9d4fbc9e5f6533a02 for pr-154205-1 [INFO] extracting crate ugv 0.1.2 into /workspace/builds/worker-5-tc1/source [INFO] started tweaking crates.io crate ugv 0.1.2 [INFO] finished tweaking crates.io crate ugv 0.1.2 [INFO] tweaked toml for crates.io crate ugv 0.1.2 written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate ugv 0.1.2 on toolchain 8a703520e80d87d4423c01f9d4fbc9e5f6533a02 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8a703520e80d87d4423c01f9d4fbc9e5f6533a02" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate ugv 0.1.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8a703520e80d87d4423c01f9d4fbc9e5f6533a02" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded libloading v0.8.9 [INFO] [stderr] Downloaded dlib v0.5.2 [INFO] [stderr] Downloaded gloo-events v0.2.0 [INFO] [stderr] Downloaded rfd v0.17.2 [INFO] [stderr] Downloaded rustls-platform-verifier-android v0.1.1 [INFO] [stderr] Downloaded gloo-file v0.3.0 [INFO] [stderr] Downloaded objc2-core-image v0.2.2 [INFO] [stderr] Downloaded objc2-symbols v0.2.2 [INFO] [stderr] Downloaded objc2-link-presentation v0.2.2 [INFO] [stderr] Downloaded pin-project-internal v1.1.10 [INFO] [stderr] Downloaded wayland-scanner v0.31.8 [INFO] [stderr] Downloaded objc2-uniform-type-identifiers v0.2.2 [INFO] [stderr] Downloaded objc2-core-data v0.2.2 [INFO] [stderr] Downloaded foreign-types-shared v0.3.1 [INFO] [stderr] Downloaded zbus-lockstep-macros v0.5.2 [INFO] [stderr] Downloaded calloop-wayland-source v0.4.1 [INFO] [stderr] Downloaded type-map v0.5.1 [INFO] [stderr] Downloaded gpu-descriptor-types v0.2.0 [INFO] [stderr] Downloaded wgpu-core-deps-apple v27.0.0 [INFO] [stderr] 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[INFO] [stderr] Downloaded windows-result v0.2.0 [INFO] [stderr] Downloaded zbus-lockstep v0.5.2 [INFO] [stderr] Downloaded piper v0.2.4 [INFO] [stderr] Downloaded wayland-protocols-misc v0.3.10 [INFO] [stderr] Downloaded glutin_wgl_sys v0.6.1 [INFO] [stderr] Downloaded xkeysym v0.2.1 [INFO] [stderr] Downloaded epaint v0.33.3 [INFO] [stderr] Downloaded png v0.18.0 [INFO] [stderr] Downloaded noodles-sam v0.81.0 [INFO] [stderr] Downloaded jni v0.21.1 [INFO] [stderr] Downloaded core-graphics-types v0.2.0 [INFO] [stderr] Downloaded cgl v0.3.2 [INFO] [stderr] Downloaded glutin_egl_sys v0.7.1 [INFO] [stderr] Downloaded glutin_glx_sys v0.6.1 [INFO] [stderr] Downloaded ndk v0.9.0 [INFO] [stderr] Downloaded objc2-metal v0.2.2 [INFO] [stderr] Downloaded calloop v0.13.0 [INFO] [stderr] Downloaded wayland-protocols-plasma v0.3.10 [INFO] [stderr] Downloaded security-framework v3.5.1 [INFO] [stderr] Downloaded cc v1.2.51 [INFO] [stderr] Downloaded wayland-backend v0.3.12 [INFO] [stderr] Downloaded core-graphics v0.23.2 [INFO] [stderr] Downloaded num_enum_derive v0.7.5 [INFO] [stderr] Downloaded num_enum v0.7.5 [INFO] [stderr] Downloaded tiny-skia-path v0.11.4 [INFO] [stderr] Downloaded sctk-adwaita v0.10.1 [INFO] [stderr] Downloaded accesskit v0.21.1 [INFO] [stderr] Downloaded emath v0.33.3 [INFO] [stderr] Downloaded ureq-proto v0.5.3 [INFO] [stderr] Downloaded pin-project v1.1.10 [INFO] [stderr] Downloaded zune-jpeg v0.4.21 [INFO] [stderr] Downloaded noodles-bam v0.85.0 [INFO] [stderr] Downloaded libz-rs-sys v0.5.5 [INFO] [stderr] Downloaded noodles-csi v0.53.0 [INFO] [stderr] Downloaded wayland-client v0.31.12 [INFO] [stderr] Downloaded foreign-types v0.5.0 [INFO] [stderr] Downloaded dpi v0.1.2 [INFO] [stderr] Downloaded objc2-cloud-kit v0.2.2 [INFO] [stderr] Downloaded objc-sys v0.3.5 [INFO] [stderr] Downloaded noodles-bgzf v0.45.0 [INFO] [stderr] Downloaded poll-promise v0.3.0 [INFO] [stderr] Downloaded find-msvc-tools v0.1.6 [INFO] [stderr] Downloaded objc2-quartz-core v0.2.2 [INFO] [stderr] Downloaded objc2-contacts v0.2.2 [INFO] [stderr] Downloaded block2 v0.5.1 [INFO] [stderr] Downloaded redox_syscall v0.7.0 [INFO] [stderr] Downloaded redox_syscall v0.4.1 [INFO] [stderr] Downloaded windows-sys v0.45.0 [INFO] [stderr] Downloaded strict-num v0.1.1 [INFO] [stderr] Downloaded wayland-protocols-wlr v0.3.10 [INFO] [stderr] Downloaded smol_str v0.2.2 [INFO] [stderr] Downloaded ecolor v0.33.3 [INFO] [stderr] Downloaded fastx v0.6.1 [INFO] [stderr] Downloaded memmap2 v0.9.9 [INFO] [stderr] Downloaded objc2-user-notifications v0.2.2 [INFO] [stderr] Downloaded cursor-icon v1.2.0 [INFO] [stderr] Downloaded xcursor v0.3.10 [INFO] [stderr] Downloaded as-raw-xcb-connection v1.0.1 [INFO] [stderr] Downloaded xkbcommon-dl v0.4.2 [INFO] [stderr] Downloaded ab_glyph_rasterizer v0.1.10 [INFO] [stderr] Downloaded owned_ttf_parser v0.25.1 [INFO] [stderr] Downloaded ab_glyph v0.2.32 [INFO] [stderr] Downloaded nohash-hasher v0.2.0 [INFO] [stderr] Downloaded profiling v1.0.17 [INFO] [stderr] Downloaded noodles-core v0.18.0 [INFO] [stderr] Downloaded pollster v0.4.0 [INFO] [stderr] Downloaded zune-core v0.4.12 [INFO] [stderr] Downloaded gloo-net v0.6.0 [INFO] [stderr] Downloaded noodles v0.104.0 [INFO] [stderr] Downloaded jni-sys v0.3.0 [INFO] [stderr] Downloaded windows-targets v0.42.2 [INFO] [stderr] Downloaded raw-window-handle v0.6.2 [INFO] [stderr] Downloaded calloop-wayland-source v0.3.0 [INFO] [stderr] Downloaded wayland-csd-frame v0.3.0 [INFO] [stderr] Downloaded wayland-cursor v0.31.12 [INFO] [stderr] Downloaded wayland-sys v0.31.8 [INFO] [stderr] Downloaded objc2-core-location v0.2.2 [INFO] [stderr] Downloaded socks v0.3.4 [INFO] [stderr] Downloaded gloo-utils v0.2.0 [INFO] [stderr] Downloaded metal v0.32.0 [INFO] [stderr] Downloaded aws-lc-sys v0.37.1 [INFO] [stderr] Downloaded windows v0.58.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+8a703520e80d87d4423c01f9d4fbc9e5f6533a02" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 5f5c72808b692a673261461b04e0f3f21b0f065a777eb68e419f69d0763e8b08 [INFO] running `Command { std: "docker" "start" "-a" "5f5c72808b692a673261461b04e0f3f21b0f065a777eb68e419f69d0763e8b08", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "5f5c72808b692a673261461b04e0f3f21b0f065a777eb68e419f69d0763e8b08", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5f5c72808b692a673261461b04e0f3f21b0f065a777eb68e419f69d0763e8b08", kill_on_drop: false }` [INFO] [stdout] 5f5c72808b692a673261461b04e0f3f21b0f065a777eb68e419f69d0763e8b08 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+8a703520e80d87d4423c01f9d4fbc9e5f6533a02" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e315e80dee78b17d28a5bf7a44d3849aaae5f3e286a9e6a73f9d76d6a446edea [INFO] running `Command { std: "docker" "start" "-a" "e315e80dee78b17d28a5bf7a44d3849aaae5f3e286a9e6a73f9d76d6a446edea", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.105 [INFO] [stderr] Compiling quote v1.0.43 [INFO] [stderr] Compiling unicode-ident v1.0.22 [INFO] [stderr] Compiling libc v0.2.179 [INFO] [stderr] Checking once_cell v1.21.3 [INFO] [stderr] Checking bitflags v2.10.0 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling find-msvc-tools v0.1.6 [INFO] [stderr] Checking pin-project-lite v0.2.16 [INFO] [stderr] Compiling rustix v1.1.3 [INFO] [stderr] Checking linux-raw-sys v0.11.0 [INFO] [stderr] Checking smallvec v1.15.1 [INFO] [stderr] Checking slab v0.4.11 [INFO] [stderr] Compiling memchr v2.7.6 [INFO] [stderr] Checking futures-core v0.3.31 [INFO] [stderr] Compiling pkg-config v0.3.32 [INFO] [stderr] Checking libloading v0.8.9 [INFO] [stderr] Compiling autocfg v1.5.0 [INFO] [stderr] Compiling syn v2.0.114 [INFO] [stderr] Compiling winnow v0.7.14 [INFO] [stderr] Compiling wayland-sys v0.31.8 [INFO] [stderr] Checking dlib v0.5.2 [INFO] [stderr] Compiling toml_datetime v0.7.5+spec-1.1.0 [INFO] [stderr] Checking futures-io v0.3.31 [INFO] [stderr] Checking scoped-tls v1.0.1 [INFO] [stderr] Checking downcast-rs v1.2.1 [INFO] [stderr] Compiling jobserver v0.1.34 [INFO] [stderr] Checking concurrent-queue v2.5.0 [INFO] [stderr] Checking tracing-core v0.1.36 [INFO] [stderr] Compiling wayland-client v0.31.12 [INFO] [stderr] Compiling cc v1.2.51 [INFO] [stderr] Checking bytes v1.11.0 [INFO] [stderr] Checking fastrand v2.3.0 [INFO] [stderr] Checking event-listener v5.4.1 [INFO] [stderr] Compiling endi v1.1.1 [INFO] [stderr] Checking event-listener-strategy v0.5.4 [INFO] [stderr] Checking futures-lite v2.6.1 [INFO] [stderr] Compiling cmake v0.1.57 [INFO] [stderr] Compiling async-io v2.6.0 [INFO] [stderr] Compiling toml_parser v1.0.6+spec-1.1.0 [INFO] [stderr] Compiling memoffset v0.9.1 [INFO] [stderr] Checking simd-adler32 v0.3.8 [INFO] [stderr] Compiling crc32fast v1.5.0 [INFO] [stderr] Compiling dunce v1.0.5 [INFO] [stderr] Compiling wayland-backend v0.3.12 [INFO] [stderr] Compiling fs_extra v1.3.0 [INFO] [stderr] Compiling toml_edit v0.23.10+spec-1.0.0 [INFO] [stderr] Compiling aws-lc-sys v0.37.1 [INFO] [stderr] Checking errno v0.3.14 [INFO] [stderr] Checking adler2 v2.0.1 [INFO] [stderr] Checking async-task v4.7.1 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Checking zlib-rs v0.5.5 [INFO] [stderr] Checking miniz_oxide v0.8.9 [INFO] [stderr] Checking signal-hook-registry v1.4.8 [INFO] [stderr] Checking async-channel v2.5.0 [INFO] [stderr] Compiling proc-macro-crate v3.4.0 [INFO] [stderr] Compiling nix v0.30.1 [INFO] [stderr] Checking libz-rs-sys v0.5.5 [INFO] [stderr] Checking futures-sink v0.3.31 [INFO] [stderr] Checking zeroize v1.8.2 [INFO] [stderr] Checking itoa v1.0.17 [INFO] [stderr] Compiling khronos_api v3.1.0 [INFO] [stderr] Checking flate2 v1.1.5 [INFO] [stderr] Compiling ring v0.17.14 [INFO] [stderr] Checking async-lock v3.4.2 [INFO] [stderr] Checking piper v0.2.4 [INFO] [stderr] Compiling rustix v0.38.44 [INFO] [stderr] Checking polling v3.11.0 [INFO] [stderr] Compiling zerocopy v0.8.33 [INFO] [stderr] Compiling getrandom v0.3.4 [INFO] [stderr] Checking ttf-parser v0.25.1 [INFO] [stderr] Compiling synstructure v0.13.2 [INFO] [stderr] Compiling aws-lc-rs v1.15.4 [INFO] [stderr] Checking async-signal v0.2.13 [INFO] [stderr] Checking async-process v2.5.0 [INFO] [stderr] Compiling ahash v0.8.12 [INFO] [stderr] Checking blocking v1.6.2 [INFO] [stderr] Checking http v1.4.0 [INFO] [stderr] Checking rustls-pki-types v1.13.2 [INFO] [stderr] Checking async-executor v1.13.3 [INFO] [stderr] Checking async-broadcast v0.7.2 [INFO] [stderr] Checking uuid v1.19.0 [INFO] [stderr] Checking ordered-stream v0.2.0 [INFO] [stderr] Checking linux-raw-sys v0.4.15 [INFO] [stderr] Compiling wasm-bindgen-shared v0.2.106 [INFO] [stderr] Checking cursor-icon v1.2.0 [INFO] [stderr] Checking hex v0.4.3 [INFO] [stderr] Compiling log v0.4.29 [INFO] [stderr] Compiling xml-rs v0.8.28 [INFO] [stderr] Checking static_assertions v1.1.0 [INFO] [stderr] Checking futures-task v0.3.31 [INFO] [stderr] Checking xcursor v0.3.10 [INFO] [stderr] Checking xkeysym v0.2.1 [INFO] [stderr] Checking ab_glyph_rasterizer v0.1.10 [INFO] [stderr] Checking wayland-csd-frame v0.3.0 [INFO] [stderr] Compiling gl_generator v0.14.0 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling enumflags2_derive v0.7.12 [INFO] [stderr] Compiling tracing-attributes v0.1.31 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] Compiling yoke-derive v0.8.1 [INFO] [stderr] Compiling bytemuck_derive v1.10.2 [INFO] [stderr] Compiling zerovec-derive v0.11.2 [INFO] [stderr] Checking tracing v0.1.44 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Checking zerofrom v0.1.6 [INFO] [stderr] Checking bytemuck v1.24.0 [INFO] [stderr] Checking yoke v0.8.1 [INFO] [stderr] Checking owned_ttf_parser v0.25.1 [INFO] [stderr] Compiling serde_repr v0.1.20 [INFO] [stderr] Checking zerovec v0.11.5 [INFO] [stderr] Checking zerotrie v0.2.3 [INFO] [stderr] Compiling async-trait v0.1.89 [INFO] [stderr] Compiling futures-macro v0.3.31 [INFO] [stderr] Checking ab_glyph v0.2.32 [INFO] [stderr] Checking getrandom v0.2.16 [INFO] [stderr] Checking memmap2 v0.9.9 [INFO] [stderr] Compiling 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[stderr] Checking accesskit_unix v0.17.2 [INFO] [stderr] Checking accesskit_winit v0.29.2 [INFO] [stderr] Checking egui-winit v0.33.3 [INFO] [stderr] Checking eframe v0.33.3 [INFO] [stderr] Checking rustls-webpki v0.103.8 [INFO] [stderr] Checking tokio-rustls v0.26.4 [INFO] [stderr] Checking ureq v3.1.4 [INFO] [stderr] Checking rustls-platform-verifier v0.6.2 [INFO] [stderr] Checking hyper-rustls v0.27.7 [INFO] [stderr] Checking reqwest v0.13.2 [INFO] [stderr] Checking fastx v0.6.1 [INFO] [stderr] Checking ugv v0.1.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused imports: `FaiEntry` and `FaiIndex` [INFO] [stdout] --> src/fasta.rs:3:18 [INFO] [stdout] | [INFO] [stdout] 3 | use fastx::fai::{FaiEntry, FaiIndex}; [INFO] [stdout] | ^^^^^^^^ ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `FaiEntry` and `FaiIndex` [INFO] [stdout] --> src/fasta.rs:3:18 [INFO] [stdout] | [INFO] [stdout] 3 | use fastx::fai::{FaiEntry, FaiIndex}; [INFO] [stdout] | ^^^^^^^^ ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias `GenomePromise` is never used [INFO] [stdout] --> src/main.rs:143:6 [INFO] [stdout] | [INFO] [stdout] 143 | type GenomePromise = egui::mutex::Mutex>>>; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias `FeaturesPromise` is never used [INFO] [stdout] --> src/main.rs:144:6 [INFO] [stdout] | [INFO] [stdout] 144 | type FeaturesPromise = egui::mutex::Mutex>>>>; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias `BamPromise` is never used [INFO] [stdout] --> src/main.rs:145:6 [INFO] [stdout] | [INFO] [stdout] 145 | type BamPromise = egui::mutex::Mutex>>>; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `track_type` is never read [INFO] [stdout] --> src/main.rs:171:5 [INFO] [stdout] | [INFO] [stdout] 169 | struct TrackConfig [INFO] [stdout] | ----------- field in this struct [INFO] [stdout] 170 | { [INFO] [stdout] 171 | track_type: TrackType, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `TrackConfig` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `ref_base`, `alt_base`, and `quality` are never read [INFO] [stdout] --> src/bam.rs:58:9 [INFO] [stdout] | [INFO] [stdout] 54 | pub struct Variant [INFO] [stdout] | ------- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 58 | pub ref_base: Option, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] 59 | pub alt_base: Option, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] 60 | pub quality: u8, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Variant` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `read_position`, `modification`, and `strand` are never read [INFO] [stdout] --> src/bam.rs:78:9 [INFO] [stdout] | [INFO] [stdout] 75 | pub struct MethylationCall [INFO] [stdout] | --------------- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 78 | pub read_position: usize, // Position in read sequence [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] 79 | pub modification: ModificationType, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] 80 | pub probability: u8, // 0-255 (ML tag value) [INFO] [stdout] 81 | pub strand: Strand, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `MethylationCall` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `flags` is never read [INFO] [stdout] --> src/bam.rs:104:9 [INFO] [stdout] | [INFO] [stdout] 96 | pub struct AlignmentRecord [INFO] [stdout] | --------------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 104 | pub flags: u16, // SAM flags [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `AlignmentRecord` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `is_mapped` and `is_reverse` are never used [INFO] [stdout] --> src/bam.rs:126:12 [INFO] [stdout] | [INFO] [stdout] 111 | impl AlignmentRecord [INFO] [stdout] | -------------------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 126 | pub fn is_mapped(&self) -> bool [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 132 | pub fn is_reverse(&self) -> bool [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `reference_name` is never read [INFO] [stdout] --> src/bam.rs:251:9 [INFO] [stdout] | [INFO] [stdout] 249 | pub struct AlignmentTrack [INFO] [stdout] | -------------- field in this struct [INFO] [stdout] 250 | { [INFO] [stdout] 251 | pub reference_name: String, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `AlignmentTrack` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `clear` is never used [INFO] [stdout] --> src/bam.rs:368:12 [INFO] [stdout] | [INFO] [stdout] 259 | impl AlignmentTrack [INFO] [stdout] | ------------------- method in this implementation [INFO] [stdout] ... [INFO] [stdout] 368 | pub fn clear(&mut self) [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `header` is never read [INFO] [stdout] --> src/bam.rs:391:9 [INFO] [stdout] | [INFO] [stdout] 379 | pub struct AlignmentData [INFO] [stdout] | ------------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 391 | pub header: sam::Header, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `AlignmentData` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `clear_all` and `clear_chromosome` are never used [INFO] [stdout] --> src/bam.rs:1547:12 [INFO] [stdout] | [INFO] [stdout] 569 | impl AlignmentData [INFO] [stdout] | ------------------ methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 1547 | pub fn clear_all(&mut self) [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 1553 | pub fn clear_chromosome(&mut self, chromosome: &str) [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `name` is never read [INFO] [stdout] --> src/fasta.rs:36:9 [INFO] [stdout] | [INFO] [stdout] 34 | pub struct ChromosomeInfo [INFO] [stdout] | -------------- field in this struct [INFO] [stdout] 35 | { [INFO] [stdout] 36 | pub name: String, [INFO] [stdout] | ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `ChromosomeInfo` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple associated items are never used [INFO] [stdout] --> src/fasta.rs:124:12 [INFO] [stdout] | [INFO] [stdout] 121 | impl Genome [INFO] [stdout] | ----------- associated items in this implementation [INFO] [stdout] ... [INFO] [stdout] 124 | pub fn from_bytes(data: Vec, is_gzipped: bool) -> Result [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 543 | pub fn from_url_unindexed(url: &str, block_size: Option) -> Result [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 614 | pub fn is_indexed(&self) -> bool [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 707 | pub fn get_full_sequence(&mut self, chr_name: &str) -> Result<&[u8]> [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 792 | pub fn clear_cache(&mut self) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 797 | pub fn get_sequence(&self, chr: &str, start: usize, end: usize) -> Option<&[u8]> [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 811 | pub fn has_sequence(&self, seq_id: &str) -> bool [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 816 | pub fn sequence_names(&self) -> Vec [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 821 | pub fn sequence_count(&self) -> usize [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `load_file` is never used [INFO] [stdout] --> src/file_loader.rs:5:8 [INFO] [stdout] | [INFO] [stdout] 5 | pub fn load_file(path: &str) -> Result> [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `load_file_native` is never used [INFO] [stdout] --> src/file_loader.rs:21:4 [INFO] [stdout] | [INFO] [stdout] 21 | fn load_file_native(path: &str) -> Result> [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `source`, `score`, and `phase` are never read [INFO] [stdout] --> src/gff.rs:18:9 [INFO] [stdout] | [INFO] [stdout] 15 | pub struct Feature [INFO] [stdout] | ------- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 18 | pub source: String, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 22 | pub score: Option, [INFO] [stdout] | ^^^^^ [INFO] [stdout] 23 | pub strand: Strand, [INFO] [stdout] 24 | pub phase: Option, [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Feature` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `parse_gff_bytes` is never used [INFO] [stdout] --> src/gff.rs:59:8 [INFO] [stdout] | [INFO] [stdout] 59 | pub fn parse_gff_bytes(data: Vec, is_gzipped: bool) -> Result> [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `circle_filled` is never used [INFO] [stdout] --> src/renderer.rs:23:8 [INFO] [stdout] | [INFO] [stdout] 17 | pub trait TrackPainter [INFO] [stdout] | ------------ method in this trait [INFO] [stdout] ... [INFO] [stdout] 23 | fn circle_filled(&self, center: Pos2, radius: f32, color: Color32); [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `chromosome` is never read [INFO] [stdout] --> src/tsv.rs:9:9 [INFO] [stdout] | [INFO] [stdout] 7 | pub struct TsvPoint [INFO] [stdout] | -------- field in this struct [INFO] [stdout] 8 | { [INFO] [stdout] 9 | pub chromosome: String, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `TsvPoint` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `track_name` is never read [INFO] [stdout] --> src/tsv.rs:56:9 [INFO] [stdout] | [INFO] [stdout] 53 | pub struct TsvData [INFO] [stdout] | ------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 56 | pub track_name: String, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `TsvData` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `from_bytes` is never used [INFO] [stdout] --> src/tsv.rs:88:12 [INFO] [stdout] | [INFO] [stdout] 59 | impl TsvData [INFO] [stdout] | ------------ associated function in this implementation [INFO] [stdout] ... [INFO] [stdout] 88 | pub fn from_bytes(data: Vec, track_name: String) -> Result [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias `GenomePromise` is never used [INFO] [stdout] --> src/main.rs:143:6 [INFO] [stdout] | [INFO] [stdout] 143 | type GenomePromise = egui::mutex::Mutex>>>; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias `FeaturesPromise` is never used [INFO] [stdout] --> src/main.rs:144:6 [INFO] [stdout] | [INFO] [stdout] 144 | type FeaturesPromise = egui::mutex::Mutex>>>>; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias `BamPromise` is never used [INFO] [stdout] --> src/main.rs:145:6 [INFO] [stdout] | [INFO] [stdout] 145 | type BamPromise = egui::mutex::Mutex>>>; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `track_type` is never read [INFO] [stdout] --> src/main.rs:171:5 [INFO] [stdout] | [INFO] [stdout] 169 | struct TrackConfig [INFO] [stdout] | ----------- field in this struct [INFO] [stdout] 170 | { [INFO] [stdout] 171 | track_type: TrackType, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `TrackConfig` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `ref_base`, `alt_base`, and `quality` are never read [INFO] [stdout] --> src/bam.rs:58:9 [INFO] [stdout] | [INFO] [stdout] 54 | pub struct Variant [INFO] [stdout] | ------- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 58 | pub ref_base: Option, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] 59 | pub alt_base: Option, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] 60 | pub quality: u8, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Variant` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `read_position`, `modification`, and `strand` are never read [INFO] [stdout] --> src/bam.rs:78:9 [INFO] [stdout] | [INFO] [stdout] 75 | pub struct MethylationCall [INFO] [stdout] | --------------- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 78 | pub read_position: usize, // Position in read sequence [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] 79 | pub modification: ModificationType, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] 80 | pub probability: u8, // 0-255 (ML tag value) [INFO] [stdout] 81 | pub strand: Strand, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `MethylationCall` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `flags` is never read [INFO] [stdout] --> src/bam.rs:104:9 [INFO] [stdout] | [INFO] [stdout] 96 | pub struct AlignmentRecord [INFO] [stdout] | --------------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 104 | pub flags: u16, // SAM flags [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `AlignmentRecord` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `is_mapped` and `is_reverse` are never used [INFO] [stdout] --> src/bam.rs:126:12 [INFO] [stdout] | [INFO] [stdout] 111 | impl AlignmentRecord [INFO] [stdout] | -------------------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 126 | pub fn is_mapped(&self) -> bool [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 132 | pub fn is_reverse(&self) -> bool [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `reference_name` is never read [INFO] [stdout] --> src/bam.rs:251:9 [INFO] [stdout] | [INFO] [stdout] 249 | pub struct AlignmentTrack [INFO] [stdout] | -------------- field in this struct [INFO] [stdout] 250 | { [INFO] [stdout] 251 | pub reference_name: String, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `AlignmentTrack` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `clear` is never used [INFO] [stdout] --> src/bam.rs:368:12 [INFO] [stdout] | [INFO] [stdout] 259 | impl AlignmentTrack [INFO] [stdout] | ------------------- method in this implementation [INFO] [stdout] ... [INFO] [stdout] 368 | pub fn clear(&mut self) [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `header` is never read [INFO] [stdout] --> src/bam.rs:391:9 [INFO] [stdout] | [INFO] [stdout] 379 | pub struct AlignmentData [INFO] [stdout] | ------------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 391 | pub header: sam::Header, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `AlignmentData` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `clear_all` and `clear_chromosome` are never used [INFO] [stdout] --> src/bam.rs:1547:12 [INFO] [stdout] | [INFO] [stdout] 569 | impl AlignmentData [INFO] [stdout] | ------------------ methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 1547 | pub fn clear_all(&mut self) [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 1553 | pub fn clear_chromosome(&mut self, chromosome: &str) [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `name` is never read [INFO] [stdout] --> src/fasta.rs:36:9 [INFO] [stdout] | [INFO] [stdout] 34 | pub struct ChromosomeInfo [INFO] [stdout] | -------------- field in this struct [INFO] [stdout] 35 | { [INFO] [stdout] 36 | pub name: String, [INFO] [stdout] | ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `ChromosomeInfo` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple associated items are never used [INFO] [stdout] --> src/fasta.rs:124:12 [INFO] [stdout] | [INFO] [stdout] 121 | impl Genome [INFO] [stdout] | ----------- associated items in this implementation [INFO] [stdout] ... [INFO] [stdout] 124 | pub fn from_bytes(data: Vec, is_gzipped: bool) -> Result [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 543 | pub fn from_url_unindexed(url: &str, block_size: Option) -> Result [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 614 | pub fn is_indexed(&self) -> bool [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 707 | pub fn get_full_sequence(&mut self, chr_name: &str) -> Result<&[u8]> [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 792 | pub fn clear_cache(&mut self) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 797 | pub fn get_sequence(&self, chr: &str, start: usize, end: usize) -> Option<&[u8]> [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 811 | pub fn has_sequence(&self, seq_id: &str) -> bool [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 816 | pub fn sequence_names(&self) -> Vec [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 821 | pub fn sequence_count(&self) -> usize [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `load_file` is never used [INFO] [stdout] --> src/file_loader.rs:5:8 [INFO] [stdout] | [INFO] [stdout] 5 | pub fn load_file(path: &str) -> Result> [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `load_file_native` is never used [INFO] [stdout] --> src/file_loader.rs:21:4 [INFO] [stdout] | [INFO] [stdout] 21 | fn load_file_native(path: &str) -> Result> [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `source`, `score`, and `phase` are never read [INFO] [stdout] --> src/gff.rs:18:9 [INFO] [stdout] | [INFO] [stdout] 15 | pub struct Feature [INFO] [stdout] | ------- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 18 | pub source: String, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 22 | pub score: Option, [INFO] [stdout] | ^^^^^ [INFO] [stdout] 23 | pub strand: Strand, [INFO] [stdout] 24 | pub phase: Option, [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Feature` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `parse_gff_bytes` is never used [INFO] [stdout] --> src/gff.rs:59:8 [INFO] [stdout] | [INFO] [stdout] 59 | pub fn parse_gff_bytes(data: Vec, is_gzipped: bool) -> Result> [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `circle_filled` is never used [INFO] [stdout] --> src/renderer.rs:23:8 [INFO] [stdout] | [INFO] [stdout] 17 | pub trait TrackPainter [INFO] [stdout] | ------------ method in this trait [INFO] [stdout] ... [INFO] [stdout] 23 | fn circle_filled(&self, center: Pos2, radius: f32, color: Color32); [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `chromosome` is never read [INFO] [stdout] --> src/tsv.rs:9:9 [INFO] [stdout] | [INFO] [stdout] 7 | pub struct TsvPoint [INFO] [stdout] | -------- field in this struct [INFO] [stdout] 8 | { [INFO] [stdout] 9 | pub chromosome: String, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `TsvPoint` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `track_name` is never read [INFO] [stdout] --> src/tsv.rs:56:9 [INFO] [stdout] | [INFO] [stdout] 53 | pub struct TsvData [INFO] [stdout] | ------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 56 | pub track_name: String, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `TsvData` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 31s [INFO] running `Command { std: "docker" "inspect" "e315e80dee78b17d28a5bf7a44d3849aaae5f3e286a9e6a73f9d76d6a446edea", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e315e80dee78b17d28a5bf7a44d3849aaae5f3e286a9e6a73f9d76d6a446edea", kill_on_drop: false }` [INFO] [stdout] e315e80dee78b17d28a5bf7a44d3849aaae5f3e286a9e6a73f9d76d6a446edea