[INFO] fetching crate mzalign 0.1.0... [INFO] checking mzalign-0.1.0 against master#8a703520e80d87d4423c01f9d4fbc9e5f6533a02 for pr-154205-1 [INFO] extracting crate mzalign 0.1.0 into /workspace/builds/worker-5-tc1/source [INFO] started tweaking crates.io crate mzalign 0.1.0 [INFO] removed 0 missing tests [INFO] finished tweaking crates.io crate mzalign 0.1.0 [INFO] tweaked toml for crates.io crate mzalign 0.1.0 written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate mzalign 0.1.0 on toolchain 8a703520e80d87d4423c01f9d4fbc9e5f6533a02 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8a703520e80d87d4423c01f9d4fbc9e5f6533a02" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate mzalign 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8a703520e80d87d4423c01f9d4fbc9e5f6533a02" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded flate2 v1.1.5 [INFO] [stderr] Downloaded context_error v0.2.0 [INFO] [stderr] Downloaded mzcv v0.1.0 [INFO] [stderr] Downloaded roxmltree v0.21.1 [INFO] [stderr] Downloaded directories v6.0.0 [INFO] [stderr] Downloaded ordered-float v5.1.0 [INFO] [stderr] Downloaded serde_json v1.0.145 [INFO] [stderr] Downloaded uom v0.37.0 [INFO] [stderr] Downloaded chrono v0.4.42 [INFO] [stderr] Downloaded imgt v0.1.0 [INFO] [stderr] Downloaded mzcore v0.1.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+8a703520e80d87d4423c01f9d4fbc9e5f6533a02" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f098c1308ec2686d1b259350f2fcce8284a8c7217840ca74d3218a24ba8cdfb3 [INFO] running `Command { std: "docker" "start" "-a" "f098c1308ec2686d1b259350f2fcce8284a8c7217840ca74d3218a24ba8cdfb3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f098c1308ec2686d1b259350f2fcce8284a8c7217840ca74d3218a24ba8cdfb3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f098c1308ec2686d1b259350f2fcce8284a8c7217840ca74d3218a24ba8cdfb3", kill_on_drop: false }` [INFO] [stdout] f098c1308ec2686d1b259350f2fcce8284a8c7217840ca74d3218a24ba8cdfb3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+8a703520e80d87d4423c01f9d4fbc9e5f6533a02" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 13c1efb820672c7f4b9f4b0be3538da65ecdc32794dacccf8223ff10c1b55767 [INFO] running `Command { std: "docker" "start" "-a" "13c1efb820672c7f4b9f4b0be3538da65ecdc32794dacccf8223ff10c1b55767", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.103 [INFO] [stderr] Compiling quote v1.0.42 [INFO] [stderr] Compiling unicode-ident v1.0.22 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling typenum v1.19.0 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling generic-array v0.14.7 [INFO] [stderr] Checking memchr v2.7.6 [INFO] [stderr] Compiling libc v0.2.177 [INFO] [stderr] Compiling crc32fast v1.5.0 [INFO] [stderr] Checking option-ext v0.2.0 [INFO] [stderr] Checking simd-adler32 v0.3.7 [INFO] [stderr] Compiling virtue v0.0.18 [INFO] [stderr] Checking miniz_oxide v0.8.9 [INFO] [stderr] Checking aho-corasick v1.1.4 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Compiling syn v2.0.110 [INFO] [stderr] Compiling bincode_derive v2.0.1 [INFO] [stderr] Checking iana-time-zone v0.1.64 [INFO] [stderr] Checking cpufeatures v0.2.17 [INFO] [stderr] Compiling serde_json v1.0.145 [INFO] [stderr] Checking regex-syntax v0.8.8 [INFO] [stderr] Checking unty v0.0.4 [INFO] [stderr] Checking chrono v0.4.42 [INFO] [stderr] Checking dirs-sys v0.5.0 [INFO] [stderr] Checking directories v6.0.0 [INFO] [stderr] Checking flate2 v1.1.5 [INFO] [stderr] Checking ryu v1.0.20 [INFO] [stderr] Checking itoa v1.0.15 [INFO] [stderr] Checking crypto-common v0.1.7 [INFO] [stderr] Checking block-buffer v0.10.4 [INFO] [stderr] Checking either v1.15.0 [INFO] [stderr] Checking roxmltree v0.21.1 [INFO] [stderr] Checking digest v0.10.7 [INFO] [stderr] Checking itertools v0.14.0 [INFO] [stderr] Checking sha2 v0.10.9 [INFO] [stderr] Checking regex-automata v0.4.13 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Checking regex v1.12.2 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking bincode v2.0.1 [INFO] [stderr] Checking context_error v0.2.0 [INFO] [stderr] Checking ordered-float v5.1.0 [INFO] [stderr] Checking thin-vec v0.2.14 [INFO] [stderr] Checking uom v0.37.0 [INFO] [stderr] Checking mzcv v0.1.0 [INFO] [stderr] Checking mzcore v0.1.0 [INFO] [stderr] Checking mzalign v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: extern crate `context_error` is unused in crate `mzalign` [INFO] [stdout] | [INFO] [stdout] = help: remove the dependency or add `use context_error as _;` to the crate root [INFO] [stdout] = note: requested on the command line with `-W unused-crate-dependencies` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: cannot find module or crate `mzident` in this scope [INFO] [stdout] --> tests/alignment.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use mzident::{PeptidoformPresent, prelude::*}; [INFO] [stdout] | ^^^^^^^ use of unresolved module or unlinked crate `mzident` [INFO] [stdout] | [INFO] [stdout] = help: if you wanted to use a crate named `mzident`, use `cargo add mzident` to add it to your `Cargo.toml` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0432]: unresolved import `mzident` [INFO] [stdout] --> tests/alignment.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use mzident::{PeptidoformPresent, prelude::*}; [INFO] [stdout] | ^^^^^^^ use of unresolved module or unlinked crate `mzident` [INFO] [stdout] | [INFO] [stdout] = help: if you wanted to use a crate named `mzident`, use `cargo add mzident` to add it to your `Cargo.toml` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0425]: cannot find type `IdentifiedPeptidoform` in this scope [INFO] [stdout] --> tests/alignment.rs:25:14 [INFO] [stdout] | [INFO] [stdout] 25 | &IdentifiedPeptidoform, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ not found in this scope [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0425]: cannot find type `IdentifiedPeptidoform` in this scope [INFO] [stdout] --> tests/alignment.rs:26:14 [INFO] [stdout] | [INFO] [stdout] 26 | &IdentifiedPeptidoform, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ not found in this scope [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: extern crate `context_error` is unused in crate `alignment` [INFO] [stdout] | [INFO] [stdout] = help: remove the dependency or add `use context_error as _;` to the crate root [INFO] [stdout] = note: requested on the command line with `-W unused-crate-dependencies` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: extern crate `itertools` is unused in crate `alignment` [INFO] [stdout] | [INFO] [stdout] = help: remove the dependency or add `use itertools as _;` to the crate root [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: extern crate `mzcv` is unused in crate `alignment` [INFO] [stdout] | [INFO] [stdout] = help: remove the dependency or add `use mzcv as _;` to the crate root [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: extern crate `ordered_float` is unused in crate `alignment` [INFO] [stdout] | [INFO] [stdout] = help: remove the dependency or add `use ordered_float as _;` to the crate root [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: extern crate `serde` is unused in crate `alignment` [INFO] [stdout] | [INFO] [stdout] = help: remove the dependency or add `use serde as _;` to the crate root [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0425]: cannot find function `open_identified_peptidoforms_file` in this scope [INFO] [stdout] --> tests/alignment.rs:12:32 [INFO] [stdout] | [INFO] [stdout] 12 | let peptidoforms: Vec<_> = open_identified_peptidoforms_file( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ not found in this scope [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: cannot find type `IdentifiedPeptidoform` in this scope [INFO] [stdout] --> tests/alignment.rs:19:17 [INFO] [stdout] | [INFO] [stdout] 19 | .filter_map(IdentifiedPeptidoform::into_simple_linear) [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ use of undeclared type `IdentifiedPeptidoform` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0425]: cannot find function `open_identified_peptidoforms_file` in this scope [INFO] [stdout] --> tests/alignment.rs:41:32 [INFO] [stdout] | [INFO] [stdout] 41 | let peptidoforms: Vec<_> = open_identified_peptidoforms_file( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ not found in this scope [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: cannot find type `IdentifiedPeptidoform` in this scope [INFO] [stdout] --> tests/alignment.rs:48:17 [INFO] [stdout] | [INFO] [stdout] 48 | .filter_map(IdentifiedPeptidoform::into_simple_linear) [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ use of undeclared type `IdentifiedPeptidoform` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0425, E0432, E0433. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0425`. [INFO] [stdout] [INFO] [stderr] error: could not compile `mzalign` (test "alignment") due to 8 previous errors; 5 warnings emitted [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "13c1efb820672c7f4b9f4b0be3538da65ecdc32794dacccf8223ff10c1b55767", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "13c1efb820672c7f4b9f4b0be3538da65ecdc32794dacccf8223ff10c1b55767", kill_on_drop: false }` [INFO] [stdout] 13c1efb820672c7f4b9f4b0be3538da65ecdc32794dacccf8223ff10c1b55767