[INFO] cloning repository https://github.com/ssVyz/oligoscreen_pairwise
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ssVyz/oligoscreen_pairwise" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FssVyz%2Foligoscreen_pairwise", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FssVyz%2Foligoscreen_pairwise'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] cb1bc60567959353990b7a4a02767417b001e0f6
[INFO] checking ssVyz/oligoscreen_pairwise against try#4907eac94165faff6c5e5e015670b1c584275f7b for pr-154149
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FssVyz%2Foligoscreen_pairwise" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/ssVyz/oligoscreen_pairwise
[INFO] finished tweaking git repo https://github.com/ssVyz/oligoscreen_pairwise
[INFO] tweaked toml for git repo https://github.com/ssVyz/oligoscreen_pairwise written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/ssVyz/oligoscreen_pairwise on toolchain 4907eac94165faff6c5e5e015670b1c584275f7b
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4907eac94165faff6c5e5e015670b1c584275f7b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/ssVyz/oligoscreen_pairwise already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4907eac94165faff6c5e5e015670b1c584275f7b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] checking ssVyz/oligoscreen_pairwise against try#4907eac94165faff6c5e5e015670b1c584275f7b for pr-154149
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FssVyz%2Foligoscreen_pairwise" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/ssVyz/oligoscreen_pairwise
[INFO] finished tweaking git repo https://github.com/ssVyz/oligoscreen_pairwise
[INFO] tweaked toml for git repo https://github.com/ssVyz/oligoscreen_pairwise written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/ssVyz/oligoscreen_pairwise on toolchain 4907eac94165faff6c5e5e015670b1c584275f7b
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4907eac94165faff6c5e5e015670b1c584275f7b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/ssVyz/oligoscreen_pairwise already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4907eac94165faff6c5e5e015670b1c584275f7b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] checking ssVyz/oligoscreen_pairwise against try#4907eac94165faff6c5e5e015670b1c584275f7b for pr-154149
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FssVyz%2Foligoscreen_pairwise" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/ssVyz/oligoscreen_pairwise
[INFO] finished tweaking git repo https://github.com/ssVyz/oligoscreen_pairwise
[INFO] tweaked toml for git repo https://github.com/ssVyz/oligoscreen_pairwise written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/ssVyz/oligoscreen_pairwise on toolchain 4907eac94165faff6c5e5e015670b1c584275f7b
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4907eac94165faff6c5e5e015670b1c584275f7b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/ssVyz/oligoscreen_pairwise already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4907eac94165faff6c5e5e015670b1c584275f7b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] checking ssVyz/oligoscreen_pairwise against try#4907eac94165faff6c5e5e015670b1c584275f7b for pr-154149
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FssVyz%2Foligoscreen_pairwise" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/ssVyz/oligoscreen_pairwise
[INFO] finished tweaking git repo https://github.com/ssVyz/oligoscreen_pairwise
[INFO] tweaked toml for git repo https://github.com/ssVyz/oligoscreen_pairwise written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/ssVyz/oligoscreen_pairwise on toolchain 4907eac94165faff6c5e5e015670b1c584275f7b
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4907eac94165faff6c5e5e015670b1c584275f7b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/ssVyz/oligoscreen_pairwise already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4907eac94165faff6c5e5e015670b1c584275f7b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] checking ssVyz/oligoscreen_pairwise against try#4907eac94165faff6c5e5e015670b1c584275f7b for pr-154149
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FssVyz%2Foligoscreen_pairwise" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/ssVyz/oligoscreen_pairwise
[INFO] finished tweaking git repo https://github.com/ssVyz/oligoscreen_pairwise
[INFO] tweaked toml for git repo https://github.com/ssVyz/oligoscreen_pairwise written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/ssVyz/oligoscreen_pairwise on toolchain 4907eac94165faff6c5e5e015670b1c584275f7b
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4907eac94165faff6c5e5e015670b1c584275f7b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/ssVyz/oligoscreen_pairwise already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4907eac94165faff6c5e5e015670b1c584275f7b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded mimalloc v0.1.48
[INFO] [stderr]   Downloaded egui_glow v0.31.1
[INFO] [stderr]   Downloaded wayland-cursor v0.31.12
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded wayland-protocols-wlr v0.3.10
[INFO] [stderr]   Downloaded accesskit_unix v0.13.1
[INFO] [stderr]   Downloaded enum-map-derive v0.17.0
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded zbus-lockstep v0.4.4
[INFO] [stderr]   Downloaded zbus_xml v4.0.0
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded atspi-connection v0.6.0
[INFO] [stderr]   Downloaded wayland-protocols-misc v0.3.10
[INFO] [stderr]   Downloaded atspi-proxies v0.6.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded rfd v0.15.4
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded simba v0.9.1
[INFO] [stderr]   Downloaded safe_arch v0.7.4
[INFO] [stderr]   Downloaded wide v0.7.33
[INFO] [stderr]   Downloaded calloop v0.14.4
[INFO] [stderr]   Downloaded ashpd v0.11.1
[INFO] [stderr]   Downloaded statrs v0.18.0
[INFO] [stderr]   Downloaded quick-xml v0.30.0
[INFO] [stderr]   Downloaded smithay-client-toolkit v0.20.0
[INFO] [stderr]   Downloaded atspi-common v0.6.0
[INFO] [stderr]   Downloaded bio v2.3.0
[INFO] [stderr]   Downloaded eframe v0.31.1
[INFO] [stderr]   Downloaded wayland-protocols-experimental v20250721.0.1
[INFO] [stderr]   Downloaded wayland-protocols-plasma v0.3.10
[INFO] [stderr]   Downloaded enum-map v2.7.3
[INFO] [stderr]   Downloaded egui-wgpu v0.31.1
[INFO] [stderr]   Downloaded accesskit_atspi_common v0.10.1
[INFO] [stderr]   Downloaded atspi v0.22.0
[INFO] [stderr]   Downloaded libmimalloc-sys v0.1.44
[INFO] [stderr]   Downloaded smithay-clipboard v0.7.3
[INFO] [stderr]   Downloaded egui-winit v0.31.1
[INFO] [stderr]   Downloaded zbus-lockstep-macros v0.4.4
[INFO] [stderr]   Downloaded calloop-wayland-source v0.4.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+4907eac94165faff6c5e5e015670b1c584275f7b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] b1633c585ebb6f7c04946b80ba446a98d0eeb9258626bd53bb9acfe9bcc93a3f
[INFO] running `Command { std: "docker" "start" "-a" "b1633c585ebb6f7c04946b80ba446a98d0eeb9258626bd53bb9acfe9bcc93a3f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b1633c585ebb6f7c04946b80ba446a98d0eeb9258626bd53bb9acfe9bcc93a3f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b1633c585ebb6f7c04946b80ba446a98d0eeb9258626bd53bb9acfe9bcc93a3f", kill_on_drop: false }`
[INFO] [stdout] b1633c585ebb6f7c04946b80ba446a98d0eeb9258626bd53bb9acfe9bcc93a3f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+4907eac94165faff6c5e5e015670b1c584275f7b" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 59708fde2e3412ef760004de7171a3e47d2c1ea8936bc958745187eb1c6044fa
[INFO] running `Command { std: "docker" "start" "-a" "59708fde2e3412ef760004de7171a3e47d2c1ea8936bc958745187eb1c6044fa", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.106
[INFO] [stderr]    Compiling quote v1.0.44
[INFO] [stderr]    Compiling rustix v1.1.3
[INFO] [stderr]     Checking linux-raw-sys v0.11.0
[INFO] [stderr]     Checking smallvec v1.15.1
[INFO] [stderr]    Compiling memchr v2.8.0
[INFO] [stderr]    Compiling find-msvc-tools v0.1.9
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]     Checking libloading v0.8.9
[INFO] [stderr]     Checking dlib v0.5.2
[INFO] [stderr]     Checking concurrent-queue v2.5.0
[INFO] [stderr]    Compiling wayland-sys v0.31.8
[INFO] [stderr]    Compiling cc v1.2.56
[INFO] [stderr]    Compiling syn v2.0.116
[INFO] [stderr]     Checking downcast-rs v1.2.1
[INFO] [stderr]     Checking scoped-tls v1.0.1
[INFO] [stderr]    Compiling quick-xml v0.38.4
[INFO] [stderr]     Checking event-listener v5.4.1
[INFO] [stderr]    Compiling wayland-client v0.31.12
[INFO] [stderr]    Compiling libm v0.2.16
[INFO] [stderr]     Checking futures-lite v2.6.1
[INFO] [stderr]     Checking event-listener-strategy v0.5.4
[INFO] [stderr]     Checking tracing-core v0.1.36
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling endi v1.1.1
[INFO] [stderr]    Compiling async-io v2.6.0
[INFO] [stderr]     Checking async-channel v2.5.0
[INFO] [stderr]    Compiling wayland-scanner v0.31.8
[INFO] [stderr]     Checking async-lock v3.4.2
[INFO] [stderr]    Compiling wayland-backend v0.3.12
[INFO] [stderr]     Checking blocking v1.6.2
[INFO] [stderr]     Checking getrandom v0.3.4
[INFO] [stderr]    Compiling memoffset v0.9.1
[INFO] [stderr]    Compiling static_assertions v1.1.0
[INFO] [stderr]     Checking async-executor v1.14.0
[INFO] [stderr]     Checking async-broadcast v0.7.2
[INFO] [stderr]     Checking async-fs v2.2.0
[INFO] [stderr]    Compiling nix v0.29.0
[INFO] [stderr]    Compiling rustix v0.38.44
[INFO] [stderr]     Checking ttf-parser v0.25.1
[INFO] [stderr]    Compiling ahash v0.8.12
[INFO] [stderr]     Checking xcursor v0.3.10
[INFO] [stderr]     Checking linux-raw-sys v0.4.15
[INFO] [stderr]     Checking ab_glyph_rasterizer v0.1.10
[INFO] [stderr]    Compiling xml-rs v0.8.28
[INFO] [stderr]     Checking cursor-icon v1.2.0
[INFO] [stderr]     Checking xkeysym v0.2.1
[INFO] [stderr]     Checking form_urlencoded v1.2.2
[INFO] [stderr]    Compiling gl_generator v0.14.0
[INFO] [stderr]    Compiling x11-dl v2.21.0
[INFO] [stderr]     Checking memmap2 v0.9.10
[INFO] [stderr]     Checking unicode-ident v1.0.24
[INFO] [stderr]     Checking hashbrown v0.15.5
[INFO] [stderr]    Compiling smithay-client-toolkit v0.19.2
[INFO] [stderr]     Checking strict-num v0.1.1
[INFO] [stderr]     Checking raw-window-handle v0.6.2
[INFO] [stderr]     Checking accesskit v0.17.1
[INFO] [stderr]     Checking parking_lot_core v0.9.12
[INFO] [stderr]     Checking owned_ttf_parser v0.25.1
[INFO] [stderr]     Checking x11rb-protocol v0.13.2
[INFO] [stderr]     Checking as-raw-xcb-connection v1.0.1
[INFO] [stderr]     Checking ab_glyph v0.2.32
[INFO] [stderr]     Checking parking_lot v0.12.5
[INFO] [stderr]     Checking immutable-chunkmap v2.1.2
[INFO] [stderr]    Compiling winit v0.30.12
[INFO] [stderr]     Checking polling v3.11.0
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling zvariant_utils v2.1.0
[INFO] [stderr]     Checking gethostname v1.1.0
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]     Checking accesskit_consumer v0.26.0
[INFO] [stderr]    Compiling glutin_egl_sys v0.7.1
[INFO] [stderr]     Checking wayland-csd-frame v0.3.0
[INFO] [stderr]    Compiling glutin_glx_sys v0.6.1
[INFO] [stderr]     Checking xkbcommon-dl v0.4.2
[INFO] [stderr]     Checking pxfm v0.1.27
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling enumflags2_derive v0.7.12
[INFO] [stderr]    Compiling bytemuck_derive v1.10.2
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.8.1
[INFO] [stderr]    Compiling tracing-attributes v0.1.31
[INFO] [stderr]    Compiling zerovec-derive v0.11.2
[INFO] [stderr]    Compiling zvariant_derive v4.2.0
[INFO] [stderr]     Checking bytemuck v1.25.0
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]     Checking zerofrom v0.1.6
[INFO] [stderr]     Checking tracing v0.1.44
[INFO] [stderr]     Checking wayland-protocols v0.32.10
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]     Checking yoke v0.8.1
[INFO] [stderr]    Compiling async-trait v0.1.89
[INFO] [stderr]    Compiling serde_repr v0.1.20
[INFO] [stderr]     Checking zerovec v0.11.5
[INFO] [stderr]     Checking zerotrie v0.2.3
[INFO] [stderr]    Compiling futures-macro v0.3.32
[INFO] [stderr]     Checking tinystr v0.8.2
[INFO] [stderr]     Checking potential_utf v0.1.4
[INFO] [stderr]    Compiling zbus_macros v4.4.0
[INFO] [stderr]     Checking icu_collections v2.1.1
[INFO] [stderr]     Checking icu_locale_core v2.1.1
[INFO] [stderr]     Checking wayland-cursor v0.31.12
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking tiny-skia-path v0.11.4
[INFO] [stderr]     Checking calloop v0.13.0
[INFO] [stderr]     Checking futures-util v0.3.32
[INFO] [stderr]     Checking icu_provider v2.1.1
[INFO] [stderr]     Checking serde v1.0.228
[INFO] [stderr]     Checking icu_normalizer v2.1.1
[INFO] [stderr]     Checking icu_properties v2.1.2
[INFO] [stderr]     Checking enumflags2 v0.7.12
[INFO] [stderr]     Checking quick-xml v0.30.0
[INFO] [stderr]     Checking zvariant v4.2.0
[INFO] [stderr]     Checking idna_adapter v1.2.1
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]    Compiling zvariant_utils v3.3.0
[INFO] [stderr]    Compiling zvariant_derive v5.9.2
[INFO] [stderr]     Checking url v2.5.8
[INFO] [stderr]     Checking calloop-wayland-source v0.3.0
[INFO] [stderr]     Checking tiny-skia v0.11.4
[INFO] [stderr]     Checking emath v0.31.1
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]     Checking zbus_names v3.0.0
[INFO] [stderr]    Compiling zvariant v5.9.2
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[INFO] [stdout] warning: function `create_consensus_from_seqs` is never used
[INFO] [stdout]    --> src/analysis/analyzer.rs:402:4
[INFO] [stdout]     |
[INFO] [stdout] 402 | fn create_consensus_from_seqs(sequences: &[&str], exclude_n: bool) -> (String, usize, bool) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `analyzer::*`
[INFO] [stdout]   --> src/analysis/mod.rs:16:9
[INFO] [stdout]    |
[INFO] [stdout] 16 | pub use analyzer::*;
[INFO] [stdout]    |         ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `pairwise::*`
[INFO] [stdout]   --> src/analysis/mod.rs:17:9
[INFO] [stdout]    |
[INFO] [stdout] 17 | pub use pairwise::*;
[INFO] [stdout]    |         ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_consensus_from_seqs` is never used
[INFO] [stdout]    --> src/analysis/analyzer.rs:402:4
[INFO] [stdout]     |
[INFO] [stdout] 402 | fn create_consensus_from_seqs(sequences: &[&str], exclude_n: bool) -> (String, usize, bool) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `analyzer::*`
[INFO] [stdout]   --> src/analysis/mod.rs:16:9
[INFO] [stdout]    |
[INFO] [stdout] 16 | pub use analyzer::*;
[INFO] [stdout]    |         ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `pairwise::*`
[INFO] [stdout]   --> src/analysis/mod.rs:17:9
[INFO] [stdout]    |
[INFO] [stdout] 17 | pub use pairwise::*;
[INFO] [stdout]    |         ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `description` is never used
[INFO] [stdout]   --> src/analysis/types.rs:25:12
[INFO] [stdout]    |
[INFO] [stdout] 24 | impl AnalysisMethod {
[INFO] [stdout]    | ------------------- method in this implementation
[INFO] [stdout] 25 |     pub fn description(&self) -> String {
[INFO] [stdout]    |            ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `current_length`, `current_position`, `total_positions`, `lengths_completed`, and `total_lengths` are never read
[INFO] [stdout]    --> src/analysis/types.rs:192:9
[INFO] [stdout]     |
[INFO] [stdout] 191 | pub struct ProgressUpdate {
[INFO] [stdout]     |            -------------- fields in this struct
[INFO] [stdout] 192 |     pub current_length: u32,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^
[INFO] [stdout] 193 |     pub current_position: usize,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^
[INFO] [stdout] 194 |     pub total_positions: usize,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^
[INFO] [stdout] 195 |     pub lengths_completed: u32,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 196 |     pub total_lengths: u32,
[INFO] [stdout]     |         ^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `ProgressUpdate` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `STANDARD_BASES` is never used
[INFO] [stdout]  --> src/analysis/iupac.rs:7:11
[INFO] [stdout]   |
[INFO] [stdout] 7 | pub const STANDARD_BASES: [char; 4] = ['A', 'C', 'G', 'T'];
[INFO] [stdout]   |           ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `AMBIGUOUS_BASES` is never used
[INFO] [stdout]   --> src/analysis/iupac.rs:10:11
[INFO] [stdout]    |
[INFO] [stdout] 10 | pub const AMBIGUOUS_BASES: [char; 11] = ['R', 'Y', 'S', 'W', 'K', 'M', 'B', 'D', 'H', 'V', 'N'];
[INFO] [stdout]    |           ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `GAP_CHARS` is never used
[INFO] [stdout]   --> src/analysis/iupac.rs:13:11
[INFO] [stdout]    |
[INFO] [stdout] 13 | pub const GAP_CHARS: [char; 2] = ['-', '.'];
[INFO] [stdout]    |           ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: static `IUPAC_TO_BASES` is never used
[INFO] [stdout]   --> src/analysis/iupac.rs:16:12
[INFO] [stdout]    |
[INFO] [stdout] 16 | pub static IUPAC_TO_BASES: Lazy<HashMap<char, HashSet<char>>> = Lazy::new(|| {
[INFO] [stdout]    |            ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: static `BASES_TO_IUPAC` is never used
[INFO] [stdout]   --> src/analysis/iupac.rs:37:12
[INFO] [stdout]    |
[INFO] [stdout] 37 | pub static BASES_TO_IUPAC: Lazy<HashMap<Vec<char>, char>> = Lazy::new(|| {
[INFO] [stdout]    |            ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `is_valid_dna` is never used
[INFO] [stdout]   --> src/analysis/iupac.rs:94:8
[INFO] [stdout]    |
[INFO] [stdout] 94 | pub fn is_valid_dna(c: char) -> bool {
[INFO] [stdout]    |        ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `bases_to_iupac` is never used
[INFO] [stdout]   --> src/analysis/iupac.rs:99:8
[INFO] [stdout]    |
[INFO] [stdout] 99 | pub fn bases_to_iupac(bases: &HashSet<char>) -> char {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `iupac_to_bases` is never used
[INFO] [stdout]    --> src/analysis/iupac.rs:106:8
[INFO] [stdout]     |
[INFO] [stdout] 106 | pub fn iupac_to_bases(code: char) -> Option<&'static HashSet<char>> {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `sequence_matches_consensus` is never used
[INFO] [stdout]    --> src/analysis/iupac.rs:111:8
[INFO] [stdout]     |
[INFO] [stdout] 111 | pub fn sequence_matches_consensus(seq: &str, consensus: &str) -> bool {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_consensus` is never used
[INFO] [stdout]    --> src/analysis/iupac.rs:131:8
[INFO] [stdout]     |
[INFO] [stdout] 131 | pub fn create_consensus(sequences: &[&str], exclude_n: bool) -> (String, usize, bool) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `count_ambiguities` is never used
[INFO] [stdout]    --> src/analysis/iupac.rs:172:8
[INFO] [stdout]     |
[INFO] [stdout] 172 | pub fn count_ambiguities(seq: &str) -> usize {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `is_empty` is never used
[INFO] [stdout]   --> src/analysis/fasta.rs:27:12
[INFO] [stdout]    |
[INFO] [stdout] 19 | impl ReferenceData {
[INFO] [stdout]    | ------------------ method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 27 |     pub fn is_empty(&self) -> bool {
[INFO] [stdout]    |            ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_consensus_from_seqs` is never used
[INFO] [stdout]    --> src/analysis/analyzer.rs:402:4
[INFO] [stdout]     |
[INFO] [stdout] 402 | fn create_consensus_from_seqs(sequences: &[&str], exclude_n: bool) -> (String, usize, bool) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `score` is never read
[INFO] [stdout]   --> src/analysis/pairwise.rs:36:9
[INFO] [stdout]    |
[INFO] [stdout] 32 | pub struct PairwiseMatch {
[INFO] [stdout]    |            ------------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 36 |     pub score: i32,
[INFO] [stdout]    |         ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `PairwiseMatch` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `align_oligo_to_reference` is never used
[INFO] [stdout]   --> src/analysis/pairwise.rs:90:8
[INFO] [stdout]    |
[INFO] [stdout] 90 | pub fn align_oligo_to_reference(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `collect_matches` is never used
[INFO] [stdout]    --> src/analysis/pairwise.rs:121:8
[INFO] [stdout]     |
[INFO] [stdout] 121 | pub fn collect_matches(
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `description` is never used
[INFO] [stdout]   --> src/analysis/types.rs:25:12
[INFO] [stdout]    |
[INFO] [stdout] 24 | impl AnalysisMethod {
[INFO] [stdout]    | ------------------- method in this implementation
[INFO] [stdout] 25 |     pub fn description(&self) -> String {
[INFO] [stdout]    |            ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `current_length`, `current_position`, `total_positions`, `lengths_completed`, and `total_lengths` are never read
[INFO] [stdout]    --> src/analysis/types.rs:192:9
[INFO] [stdout]     |
[INFO] [stdout] 191 | pub struct ProgressUpdate {
[INFO] [stdout]     |            -------------- fields in this struct
[INFO] [stdout] 192 |     pub current_length: u32,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^
[INFO] [stdout] 193 |     pub current_position: usize,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^
[INFO] [stdout] 194 |     pub total_positions: usize,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^
[INFO] [stdout] 195 |     pub lengths_completed: u32,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 196 |     pub total_lengths: u32,
[INFO] [stdout]     |         ^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `ProgressUpdate` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `STANDARD_BASES` is never used
[INFO] [stdout]  --> src/analysis/iupac.rs:7:11
[INFO] [stdout]   |
[INFO] [stdout] 7 | pub const STANDARD_BASES: [char; 4] = ['A', 'C', 'G', 'T'];
[INFO] [stdout]   |           ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `AMBIGUOUS_BASES` is never used
[INFO] [stdout]   --> src/analysis/iupac.rs:10:11
[INFO] [stdout]    |
[INFO] [stdout] 10 | pub const AMBIGUOUS_BASES: [char; 11] = ['R', 'Y', 'S', 'W', 'K', 'M', 'B', 'D', 'H', 'V', 'N'];
[INFO] [stdout]    |           ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `GAP_CHARS` is never used
[INFO] [stdout]   --> src/analysis/iupac.rs:13:11
[INFO] [stdout]    |
[INFO] [stdout] 13 | pub const GAP_CHARS: [char; 2] = ['-', '.'];
[INFO] [stdout]    |           ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: static `BASES_TO_IUPAC` is never used
[INFO] [stdout]   --> src/analysis/iupac.rs:37:12
[INFO] [stdout]    |
[INFO] [stdout] 37 | pub static BASES_TO_IUPAC: Lazy<HashMap<Vec<char>, char>> = Lazy::new(|| {
[INFO] [stdout]    |            ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `is_valid_dna` is never used
[INFO] [stdout]   --> src/analysis/iupac.rs:94:8
[INFO] [stdout]    |
[INFO] [stdout] 94 | pub fn is_valid_dna(c: char) -> bool {
[INFO] [stdout]    |        ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `bases_to_iupac` is never used
[INFO] [stdout]   --> src/analysis/iupac.rs:99:8
[INFO] [stdout]    |
[INFO] [stdout] 99 | pub fn bases_to_iupac(bases: &HashSet<char>) -> char {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `iupac_to_bases` is never used
[INFO] [stdout]    --> src/analysis/iupac.rs:106:8
[INFO] [stdout]     |
[INFO] [stdout] 106 | pub fn iupac_to_bases(code: char) -> Option<&'static HashSet<char>> {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_consensus` is never used
[INFO] [stdout]    --> src/analysis/iupac.rs:131:8
[INFO] [stdout]     |
[INFO] [stdout] 131 | pub fn create_consensus(sequences: &[&str], exclude_n: bool) -> (String, usize, bool) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `count_ambiguities` is never used
[INFO] [stdout]    --> src/analysis/iupac.rs:172:8
[INFO] [stdout]     |
[INFO] [stdout] 172 | pub fn count_ambiguities(seq: &str) -> usize {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `is_empty` is never used
[INFO] [stdout]   --> src/analysis/fasta.rs:27:12
[INFO] [stdout]    |
[INFO] [stdout] 19 | impl ReferenceData {
[INFO] [stdout]    | ------------------ method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 27 |     pub fn is_empty(&self) -> bool {
[INFO] [stdout]    |            ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_consensus_from_seqs` is never used
[INFO] [stdout]    --> src/analysis/analyzer.rs:402:4
[INFO] [stdout]     |
[INFO] [stdout] 402 | fn create_consensus_from_seqs(sequences: &[&str], exclude_n: bool) -> (String, usize, bool) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `score` is never read
[INFO] [stdout]   --> src/analysis/pairwise.rs:36:9
[INFO] [stdout]    |
[INFO] [stdout] 32 | pub struct PairwiseMatch {
[INFO] [stdout]    |            ------------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 36 |     pub score: i32,
[INFO] [stdout]    |         ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `PairwiseMatch` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 27s
[INFO] running `Command { std: "docker" "inspect" "59708fde2e3412ef760004de7171a3e47d2c1ea8936bc958745187eb1c6044fa", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "59708fde2e3412ef760004de7171a3e47d2c1ea8936bc958745187eb1c6044fa", kill_on_drop: false }`
[INFO] [stdout] 59708fde2e3412ef760004de7171a3e47d2c1ea8936bc958745187eb1c6044fa