[INFO] cloning repository https://github.com/kgori/alignomatic
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/kgori/alignomatic" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkgori%2Falignomatic", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkgori%2Falignomatic'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 88416e910ebe416a73bd4e9ff82db3ecd875f0b1
[INFO] testing kgori/alignomatic against master#1f7f8ea0721a3b1eb73e6c6d25cccb371434b320 for pr-154065
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkgori%2Falignomatic" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/kgori/alignomatic
[INFO] finished tweaking git repo https://github.com/kgori/alignomatic
[INFO] tweaked toml for git repo https://github.com/kgori/alignomatic written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/kgori/alignomatic on toolchain 1f7f8ea0721a3b1eb73e6c6d25cccb371434b320
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/kgori/alignomatic already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/kgori/rust-bwa.git`
[INFO] [stderr]     Updating git submodule `https://github.com/10XGenomics/bwa.git`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded serde_bytes v0.11.19
[INFO] [stderr]   Downloaded derive-new v0.7.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded bgzf v0.2.0
[INFO] [stderr]   Downloaded enum-map v2.7.3
[INFO] [stderr]   Downloaded blake3 v1.8.3
[INFO] [stderr]   Downloaded libdeflater v0.7.5
[INFO] [stderr]   Downloaded zerocopy v0.8.38
[INFO] [stderr]   Downloaded portable-atomic-util v0.2.5
[INFO] [stderr]   Downloaded bgzip v0.3.1
[INFO] [stderr]   Downloaded liblzma v0.3.6
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded derefable v0.1.0
[INFO] [stderr]   Downloaded enum-map-derive v0.17.0
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded rust-htslib v1.0.0
[INFO] [stderr]   Downloaded constant_time_eq v0.4.2
[INFO] [stderr]   Downloaded getset v0.1.6
[INFO] [stderr]   Downloaded ordered-float v5.1.0
[INFO] [stderr]   Downloaded zerocopy-derive v0.8.38
[INFO] [stderr]   Downloaded libdeflate-sys v0.7.5
[INFO] [stderr]   Downloaded statrs v0.18.0
[INFO] [stderr]   Downloaded bio v3.0.0
[INFO] [stderr]   Downloaded petgraph v0.8.3
[INFO] [stderr]   Downloaded liblzma-sys v0.3.13
[INFO] [stderr]   Downloaded niffler v2.7.0
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ae85b43758d3a80a43ce741e5dbae163855e357a5a98375ca098c32d1ceaff04
[INFO] running `Command { std: "docker" "start" "-a" "ae85b43758d3a80a43ce741e5dbae163855e357a5a98375ca098c32d1ceaff04", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ae85b43758d3a80a43ce741e5dbae163855e357a5a98375ca098c32d1ceaff04", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ae85b43758d3a80a43ce741e5dbae163855e357a5a98375ca098c32d1ceaff04", kill_on_drop: false }`
[INFO] [stdout] ae85b43758d3a80a43ce741e5dbae163855e357a5a98375ca098c32d1ceaff04
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] b6991284554de976332d7772da30d39bc8e9cd84306765ed916c1b81031f5cc4
[INFO] running `Command { std: "docker" "start" "-a" "b6991284554de976332d7772da30d39bc8e9cd84306765ed916c1b81031f5cc4", kill_on_drop: false }`
[INFO] [stderr]    Compiling pkg-config v0.3.32
[INFO] [stderr]    Compiling memchr v2.7.6
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling glob v0.3.3
[INFO] [stderr]    Compiling zerocopy v0.8.38
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling regex-syntax v0.8.9
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling zerovec-derive v0.11.2
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling bytemuck v1.25.0
[INFO] [stderr]    Compiling cc v1.2.55
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling aho-corasick v1.1.4
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling cmake v0.1.57
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.8.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling safe_arch v0.7.4
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling bitflags v2.10.0
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling libz-sys v1.1.23
[INFO] [stderr]    Compiling wide v0.7.33
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling zerofrom v0.1.6
[INFO] [stderr]    Compiling yoke v0.8.1
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling zerovec v0.11.5
[INFO] [stderr]    Compiling zerotrie v0.2.3
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]    Compiling anstyle-parse v0.2.7
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling liblzma-sys v0.3.13
[INFO] [stderr]    Compiling tinystr v0.8.2
[INFO] [stderr]    Compiling potential_utf v0.1.4
[INFO] [stderr]    Compiling icu_locale_core v2.1.1
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]    Compiling icu_collections v2.1.1
[INFO] [stderr]    Compiling libdeflate-sys v0.7.5
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling simba v0.9.1
[INFO] [stderr]    Compiling proc-macro-error-attr2 v2.0.0
[INFO] [stderr]    Compiling anstyle v1.0.13
[INFO] [stderr]    Compiling simd-adler32 v0.3.8
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling percent-encoding v2.3.2
[INFO] [stderr]    Compiling colorchoice v1.0.4
[INFO] [stderr]    Compiling adler2 v2.0.1
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.2
[INFO] [stderr]    Compiling anstyle-query v1.1.5
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]    Compiling anstream v0.6.21
[INFO] [stderr]    Compiling form_urlencoded v1.2.2
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]    Compiling indexmap v2.13.0
[INFO] [stderr]    Compiling hashbrown v0.15.5
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
[INFO] [stderr]    Compiling icu_provider v2.1.1
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling icu_normalizer v2.1.1
[INFO] [stderr]    Compiling icu_properties v2.1.2
[INFO] [stderr]    Compiling bwa-sys v0.1.0 (https://github.com/kgori/rust-bwa.git?tag=v0.1.5#de5e6235)
[INFO] [stderr]    Compiling csv-core v0.1.13
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling zmij v1.0.19
[INFO] [stderr]    Compiling fixedbitset v0.5.7
[INFO] [stderr]    Compiling rustix v1.1.3
[INFO] [stderr]    Compiling idna_adapter v1.2.1
[INFO] [stderr]    Compiling idna v1.1.0
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling csv v1.4.0
[INFO] [stderr]    Compiling itertools v0.14.0
[INFO] [stderr]    Compiling petgraph v0.8.3
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling flate2 v1.1.9
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling getset v0.1.6
[INFO] [stderr]    Compiling url v2.5.8
[INFO] [stderr]    Compiling multimap v0.10.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling serde_bytes v0.11.19
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling blake3 v1.8.3
[INFO] [stderr]    Compiling ordered-float v5.1.0
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling serde_json v1.0.149
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling linux-raw-sys v0.11.0
[INFO] [stderr]    Compiling bytecount v0.6.9
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling clap_lex v0.7.7
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling clap_builder v4.5.57
[INFO] [stderr]    Compiling env_filter v0.1.4
[INFO] [stderr]    Compiling libdeflater v0.7.5
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]    Compiling bgzip v0.3.1
[INFO] [stderr]    Compiling bzip2 v0.4.4
[INFO] [stderr]    Compiling clap_derive v4.5.55
[INFO] [stderr]    Compiling arrayref v0.3.9
[INFO] [stderr]    Compiling arrayvec v0.7.6
[INFO] [stderr]    Compiling fastrand v2.3.0
[INFO] [stderr]    Compiling constant_time_eq v0.4.2
[INFO] [stderr]    Compiling jiff v0.2.18
[INFO] [stderr]    Compiling once_cell v1.21.3
[INFO] [stderr]    Compiling bgzf v0.2.0
[INFO] [stderr]    Compiling num_cpus v1.17.0
[INFO] [stderr] error: could not compile `simba` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/1f7f8ea0721a3b1eb73e6c6d25cccb371434b320/bin/rustc --crate-name simba --edition=2018 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/simba-0.9.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="std"' --cfg 'feature="wide"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("cordic", "decimal", "default", "fixed", "libm", "libm_force", "partial_fixed_point_support", "portable_simd", "rand", "rkyv", "rkyv-serialize", "serde", "serde_serialize", "std", "wide"))' -C metadata=deaa66c9f37380f5 -C extra-filename=-65047ff1ff1628df --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern approx=/opt/rustwide/target/debug/deps/libapprox-607a1bfcf54e8c83.rmeta --extern num_complex=/opt/rustwide/target/debug/deps/libnum_complex-c8a38b35e430f3d1.rmeta --extern num_traits=/opt/rustwide/target/debug/deps/libnum_traits-03fd58aafdbeefe6.rmeta --extern paste=/opt/rustwide/target/debug/deps/libpaste-c5e5e8a2bd161c29.so --extern wide=/opt/rustwide/target/debug/deps/libwide-c39d7a0d7eadf47f.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "b6991284554de976332d7772da30d39bc8e9cd84306765ed916c1b81031f5cc4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b6991284554de976332d7772da30d39bc8e9cd84306765ed916c1b81031f5cc4", kill_on_drop: false }`
[INFO] [stdout] b6991284554de976332d7772da30d39bc8e9cd84306765ed916c1b81031f5cc4