[INFO] cloning repository https://github.com/mvalorilab/somaticbatch
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/mvalorilab/somaticbatch" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmvalorilab%2Fsomaticbatch", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmvalorilab%2Fsomaticbatch'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 43654256b8b3a5da72ccc8921ca454fea65387eb
[INFO] testing mvalorilab/somaticbatch/43654256b8b3a5da72ccc8921ca454fea65387eb against master#cced03bfd61a304243a34504618ecec86c17063f for pr-154065-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmvalorilab%2Fsomaticbatch" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/mvalorilab/somaticbatch
[INFO] finished tweaking git repo https://github.com/mvalorilab/somaticbatch
[INFO] tweaked toml for git repo https://github.com/mvalorilab/somaticbatch written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/mvalorilab/somaticbatch on toolchain cced03bfd61a304243a34504618ecec86c17063f
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cced03bfd61a304243a34504618ecec86c17063f" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/mvalorilab/somaticbatch already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cced03bfd61a304243a34504618ecec86c17063f" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded nalgebra-macros v0.1.0
[INFO] [stderr]   Downloaded float_extras v0.1.6
[INFO] [stderr]   Downloaded simba v0.5.1
[INFO] [stderr]   Downloaded statrs v0.15.0
[INFO] [stderr]   Downloaded nalgebra v0.27.1
[INFO] [stderr]   Downloaded libc v0.2.118
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+cced03bfd61a304243a34504618ecec86c17063f" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 18edbbf9852902b43c95ceb3f52e537ddb2cc68ee9c40b0cf72be6fed5b5608f
[INFO] running `Command { std: "docker" "start" "-a" "18edbbf9852902b43c95ceb3f52e537ddb2cc68ee9c40b0cf72be6fed5b5608f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "18edbbf9852902b43c95ceb3f52e537ddb2cc68ee9c40b0cf72be6fed5b5608f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "18edbbf9852902b43c95ceb3f52e537ddb2cc68ee9c40b0cf72be6fed5b5608f", kill_on_drop: false }`
[INFO] [stdout] 18edbbf9852902b43c95ceb3f52e537ddb2cc68ee9c40b0cf72be6fed5b5608f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+cced03bfd61a304243a34504618ecec86c17063f" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] d4b4852f2a7eaa706e833a97af7457992e49d20bb53cb8a9586d43caa1cc48d7
[INFO] running `Command { std: "docker" "start" "-a" "d4b4852f2a7eaa706e833a97af7457992e49d20bb53cb8a9586d43caa1cc48d7", kill_on_drop: false }`
[INFO] [stderr]    Compiling libm v0.2.2
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling libc v0.2.118
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling syn v1.0.86
[INFO] [stderr]    Compiling num-rational v0.4.0
[INFO] [stderr]    Compiling paste v1.0.6
[INFO] [stderr]    Compiling matrixmultiply v0.3.2
[INFO] [stderr]    Compiling linked-hash-map v0.5.4
[INFO] [stderr]    Compiling getrandom v0.2.4
[INFO] [stderr]    Compiling float_extras v0.1.6
[INFO] [stderr]    Compiling rand_core v0.6.3
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling num-complex v0.4.0
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling simba v0.5.1
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling nalgebra v0.27.1
[INFO] [stderr]    Compiling statrs v0.15.0
[INFO] [stderr]    Compiling amplicon_caller v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 19.60s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 4`
[INFO] running `Command { std: "docker" "inspect" "d4b4852f2a7eaa706e833a97af7457992e49d20bb53cb8a9586d43caa1cc48d7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d4b4852f2a7eaa706e833a97af7457992e49d20bb53cb8a9586d43caa1cc48d7", kill_on_drop: false }`
[INFO] [stdout] d4b4852f2a7eaa706e833a97af7457992e49d20bb53cb8a9586d43caa1cc48d7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+cced03bfd61a304243a34504618ecec86c17063f" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c80e63b385cc3bd20fcabe494eb2bca35c519eb7c17fdb04332abffc5d6d47c5
[INFO] running `Command { std: "docker" "start" "-a" "c80e63b385cc3bd20fcabe494eb2bca35c519eb7c17fdb04332abffc5d6d47c5", kill_on_drop: false }`
[INFO] [stderr]    Compiling amplicon_caller v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.48s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 4`
[INFO] running `Command { std: "docker" "inspect" "c80e63b385cc3bd20fcabe494eb2bca35c519eb7c17fdb04332abffc5d6d47c5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c80e63b385cc3bd20fcabe494eb2bca35c519eb7c17fdb04332abffc5d6d47c5", kill_on_drop: false }`
[INFO] [stdout] c80e63b385cc3bd20fcabe494eb2bca35c519eb7c17fdb04332abffc5d6d47c5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+cced03bfd61a304243a34504618ecec86c17063f" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 27cee44484a6f87df67b16f50ed16667a5a5cb5c6650cb2c0cb3fc2a6dc69ea0
[INFO] running `Command { std: "docker" "start" "-a" "27cee44484a6f87df67b16f50ed16667a5a5cb5c6650cb2c0cb3fc2a6dc69ea0", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.05s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 4`
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/amplicon_caller-c454f68824a78b3c)
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "27cee44484a6f87df67b16f50ed16667a5a5cb5c6650cb2c0cb3fc2a6dc69ea0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "27cee44484a6f87df67b16f50ed16667a5a5cb5c6650cb2c0cb3fc2a6dc69ea0", kill_on_drop: false }`
[INFO] [stdout] 27cee44484a6f87df67b16f50ed16667a5a5cb5c6650cb2c0cb3fc2a6dc69ea0
