[INFO] cloning repository https://github.com/skilltron/reaction_modeler
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/skilltron/reaction_modeler" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fskilltron%2Freaction_modeler", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fskilltron%2Freaction_modeler'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 6f69375e1072b006826f1eef9a5f0f5bc805aee9
[INFO] testing skilltron/reaction_modeler against master#1f7f8ea0721a3b1eb73e6c6d25cccb371434b320 for pr-154065-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fskilltron%2Freaction_modeler" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/skilltron/reaction_modeler
[INFO] finished tweaking git repo https://github.com/skilltron/reaction_modeler
[INFO] tweaked toml for git repo https://github.com/skilltron/reaction_modeler written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/skilltron/reaction_modeler on toolchain 1f7f8ea0721a3b1eb73e6c6d25cccb371434b320
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/skilltron/reaction_modeler already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 8cd6fc8111ed506fa29dbbbd707fbc54aa9c768f21c3e71fef044737a3c30e6e
[INFO] running `Command { std: "docker" "start" "-a" "8cd6fc8111ed506fa29dbbbd707fbc54aa9c768f21c3e71fef044737a3c30e6e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "8cd6fc8111ed506fa29dbbbd707fbc54aa9c768f21c3e71fef044737a3c30e6e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8cd6fc8111ed506fa29dbbbd707fbc54aa9c768f21c3e71fef044737a3c30e6e", kill_on_drop: false }`
[INFO] [stdout] 8cd6fc8111ed506fa29dbbbd707fbc54aa9c768f21c3e71fef044737a3c30e6e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 6c965c050eb3e087630e97ef6e73f675630abe83a5074a7dae6bf2ed3f62b362
[INFO] running `Command { std: "docker" "start" "-a" "6c965c050eb3e087630e97ef6e73f675630abe83a5074a7dae6bf2ed3f62b362", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.106
[INFO] [stderr]    Compiling quote v1.0.45
[INFO] [stderr]    Compiling unicode-ident v1.0.24
[INFO] [stderr]    Compiling zmij v1.0.21
[INFO] [stderr]    Compiling simd-adler32 v0.3.8
[INFO] [stderr]    Compiling serde_json v1.0.149
[INFO] [stderr]    Compiling memchr v2.8.0
[INFO] [stderr]    Compiling itoa v1.0.17
[INFO] [stderr]    Compiling iana-time-zone v0.1.65
[INFO] [stderr]    Compiling chrono v0.4.44
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling flate2 v1.1.9
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling shard_db v0.1.0 (/opt/rustwide/workdir/crates/shard_db)
[INFO] [stderr]    Compiling genetic_conditions v0.1.0 (/opt/rustwide/workdir/crates/genetic_conditions)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 18.37s
[INFO] running `Command { std: "docker" "inspect" "6c965c050eb3e087630e97ef6e73f675630abe83a5074a7dae6bf2ed3f62b362", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6c965c050eb3e087630e97ef6e73f675630abe83a5074a7dae6bf2ed3f62b362", kill_on_drop: false }`
[INFO] [stdout] 6c965c050eb3e087630e97ef6e73f675630abe83a5074a7dae6bf2ed3f62b362
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] dc55f7ba37bb44385c484dddf5495010059c9ee9c6119705ca3cc0bc50549444
[INFO] running `Command { std: "docker" "start" "-a" "dc55f7ba37bb44385c484dddf5495010059c9ee9c6119705ca3cc0bc50549444", kill_on_drop: false }`
[INFO] [stderr]    Compiling shard_db v0.1.0 (/opt/rustwide/workdir/crates/shard_db)
[INFO] [stderr]    Compiling genetic_conditions v0.1.0 (/opt/rustwide/workdir/crates/genetic_conditions)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 6.37s
[INFO] running `Command { std: "docker" "inspect" "dc55f7ba37bb44385c484dddf5495010059c9ee9c6119705ca3cc0bc50549444", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "dc55f7ba37bb44385c484dddf5495010059c9ee9c6119705ca3cc0bc50549444", kill_on_drop: false }`
[INFO] [stdout] dc55f7ba37bb44385c484dddf5495010059c9ee9c6119705ca3cc0bc50549444
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 43f65de3d465f560772391bd3e137564ed658bc636018d54fcc248b91c5b8758
[INFO] running `Command { std: "docker" "start" "-a" "43f65de3d465f560772391bd3e137564ed658bc636018d54fcc248b91c5b8758", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.07s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/genetic_conditions-ebb7d142feda179b)
[INFO] [stdout] 
[INFO] [stdout] running 16 tests
[INFO] [stdout] test copy_number::tests::tpsab1_copy_number_found ... ok
[INFO] [stdout] test copy_number::tests::tpsab1_no_gain ... ok
[INFO] [stdout] test tests::survival_analysis_empty ... ok
[INFO] [stdout] test copy_number::tests::tpsab1_missing ... ok
[INFO] [stdout] test tests::annotation_fills_gene_from_rsid_and_cascade_scores_nonzero ... ok
[INFO] [stdout] test tests::cascade_from_report ... ok
[INFO] [stdout] test tests::check_variants_empty ... ok
[INFO] [stdout] test tests::check_variants_kit_finding ... ok
[INFO] [stdout] test tests::html_with_cascade_and_survival ... ok
[INFO] [stdout] test tests::supplements_count_at_most_15 ... ok
[INFO] [stdout] test tests::kit_d816v_detected_when_present ... ok
[INFO] [stdout] test tests::survival_analysis_col1a1 ... ok
[INFO] [stdout] test tests::star_allele_inference_cyp2c19 ... ok
[INFO] [stdout] test tests::exercise_ammonia_section_in_html ... ok
[INFO] [stdout] test tests::mcas_integrated_section_in_html ... ok
[INFO] [stdout] test tests::html_contains_mcas_and_supplements ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 16 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/assess_run.rs (/opt/rustwide/target/debug/deps/assess_run-0ea3c115226f0696)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/compare_variant_sources.rs (/opt/rustwide/target/debug/deps/compare_variant_sources-8d662b1c919c8e29)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/fastq_to_variants.rs (/opt/rustwide/target/debug/deps/fastq_to_variants-8f4ac2122b91e5ca)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/report_html.rs (/opt/rustwide/target/debug/deps/genetic_report_html-52b025a10d35bfac)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/mdng_to_variants.rs (/opt/rustwide/target/debug/deps/mdng_to_variants-a3a9dfbedd73c831)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/proof_report.rs (/opt/rustwide/target/debug/deps/proof_report-419933a06f594839)
[INFO] [stderr]      Running unittests src/bin/txt_to_variants.rs (/opt/rustwide/target/debug/deps/txt_to_variants-cd045db2660175ca)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/vcf_to_variants.rs (/opt/rustwide/target/debug/deps/vcf_to_variants-d29caf470cc233d5)
[INFO] [stderr]      Running unittests src/bin/verify_mcas.rs (/opt/rustwide/target/debug/deps/verify_mcas-ffa9a655c2edc844)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/shard_db-6b175343b7d73fb1)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/combine_to_mdng.rs (/opt/rustwide/target/debug/deps/combine_to_mdng-eea9d7387980b722)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests genetic_conditions
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests shard_db
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "43f65de3d465f560772391bd3e137564ed658bc636018d54fcc248b91c5b8758", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "43f65de3d465f560772391bd3e137564ed658bc636018d54fcc248b91c5b8758", kill_on_drop: false }`
[INFO] [stdout] 43f65de3d465f560772391bd3e137564ed658bc636018d54fcc248b91c5b8758
