[INFO] fetching crate klassify 0.1.6...
[INFO] testing klassify-0.1.6 against master#1f7f8ea0721a3b1eb73e6c6d25cccb371434b320 for pr-154065-1
[INFO] extracting crate klassify 0.1.6 into /workspace/builds/worker-0-tc1/source
[INFO] started tweaking crates.io crate klassify 0.1.6
[INFO] finished tweaking crates.io crate klassify 0.1.6
[INFO] tweaked toml for crates.io crate klassify 0.1.6 written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate klassify 0.1.6 on toolchain 1f7f8ea0721a3b1eb73e6c6d25cccb371434b320
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate klassify 0.1.6 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded fs-utils v1.1.4
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[INFO] [stderr]   Downloaded core_affinity v0.5.10
[INFO] [stderr]   Downloaded enum-map-derive v0.6.0
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[INFO] [stderr]   Downloaded clap v4.5.11
[INFO] [stderr]   Downloaded rust-htslib v0.39.5
[INFO] [stderr]   Downloaded rust-lapper v1.2.0
[INFO] [stderr]   Downloaded statrs v0.15.0
[INFO] [stderr]   Downloaded libdeflater v0.7.5
[INFO] [stderr]   Downloaded clap_builder v4.5.11
[INFO] [stderr]   Downloaded libdeflate-sys v0.7.5
[INFO] [stderr]   Downloaded bio v0.41.0
[INFO] [stderr]   Downloaded needletail v0.5.1
[INFO] [stderr]   Downloaded simba v0.5.1
[INFO] [stderr]   Downloaded grep-cli v0.1.11
[INFO] [stderr]   Downloaded bio-types v1.0.3
[INFO] [stderr]   Downloaded strum v0.23.0
[INFO] [stderr]   Downloaded strum_macros v0.23.1
[INFO] [stderr]   Downloaded csv-core v0.1.11
[INFO] [stderr]   Downloaded nalgebra v0.27.1
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded nalgebra-macros v0.1.0
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded perbase v1.0.0
[INFO] [stderr]   Downloaded csv v1.3.0
[INFO] [stderr]   Downloaded curl-sys v0.4.74+curl-8.9.0
[INFO] [stderr]   Downloaded gzp v0.10.1
[INFO] [stderr]   Downloaded hts-sys v2.1.4
[INFO] [stderr]   Downloaded openssl-src v300.3.1+3.3.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 2c7790802c7f48c09846155f8a15787f990fad15bc6ff2bfa6aa846b91932e2b
[INFO] running `Command { std: "docker" "start" "-a" "2c7790802c7f48c09846155f8a15787f990fad15bc6ff2bfa6aa846b91932e2b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "2c7790802c7f48c09846155f8a15787f990fad15bc6ff2bfa6aa846b91932e2b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2c7790802c7f48c09846155f8a15787f990fad15bc6ff2bfa6aa846b91932e2b", kill_on_drop: false }`
[INFO] [stdout] 2c7790802c7f48c09846155f8a15787f990fad15bc6ff2bfa6aa846b91932e2b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5b8085580f66f26062b3659b62aeec952a071a69e920728cf21d0f792e751ce2
[INFO] running `Command { std: "docker" "start" "-a" "5b8085580f66f26062b3659b62aeec952a071a69e920728cf21d0f792e751ce2", kill_on_drop: false }`
[INFO] [stderr]    Compiling crossbeam-utils v0.8.20
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling jobserver v0.1.32
[INFO] [stderr]    Compiling getrandom v0.2.16
[INFO] [stderr]    Compiling regex-automata v0.4.7
[INFO] [stderr]    Compiling thiserror v1.0.63
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling log v0.4.22
[INFO] [stderr]    Compiling unicode-segmentation v1.12.0
[INFO] [stderr]    Compiling syn v2.0.87
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling feature-probe v0.1.1
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[INFO] [stderr]    Compiling bit-set v0.5.3
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[INFO] [stderr]    Compiling rayon-core v1.12.1
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[INFO] [stderr]    Compiling openssl-src v300.3.1+3.3.1
[INFO] [stderr]    Compiling itertools v0.10.5
[INFO] [stderr]    Compiling virtue v0.0.18
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling strum v0.23.0
[INFO] [stderr]    Compiling num-integer v0.1.46
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[INFO] [stderr]    Compiling approx v0.5.1
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[INFO] [stderr]    Compiling itertools-num v0.1.3
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[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling clap_builder v4.5.11
[INFO] [stderr]    Compiling crossbeam v0.8.4
[INFO] [stderr]    Compiling rust-lapper v1.2.0
[INFO] [stderr]    Compiling simba v0.5.1
[INFO] [stderr]    Compiling ndarray v0.15.6
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling petgraph v0.6.5
[INFO] [stderr]    Compiling bincode_derive v2.0.1
[INFO] [stderr]    Compiling buffer-redux v1.0.1
[INFO] [stderr]    Compiling libz-sys v1.1.22
[INFO] [stderr]    Compiling openssl-sys v0.9.103
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling curl-sys v0.4.74+curl-8.9.0
[INFO] [stderr]    Compiling regex v1.10.5
[INFO] [stderr]    Compiling libdeflate-sys v0.7.5
[INFO] [stderr]    Compiling hts-sys v2.1.4
[INFO] [stderr]    Compiling bstr v1.12.0
[INFO] [stderr]    Compiling rayon v1.10.0
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling bzip2 v0.4.4
[INFO] [stderr]    Compiling env_logger v0.9.3
[INFO] [stderr]    Compiling globset v0.4.16
[INFO] [stderr]    Compiling env_filter v0.1.2
[INFO] [stderr]    Compiling env_home v0.1.0
[INFO] [stderr]    Compiling lru_time_cache v0.11.11
[INFO] [stderr]    Compiling unty v0.0.4
[INFO] [stderr]    Compiling bincode v2.0.1
[INFO] [stderr]    Compiling env_logger v0.11.5
[INFO] [stderr]    Compiling which v8.0.0
[INFO] [stderr]    Compiling grep-cli v0.1.11
[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
[INFO] [stderr]    Compiling libdeflater v0.7.5
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.23.1
[INFO] [stderr]    Compiling structopt-derive v0.4.18
[INFO] [stderr]    Compiling enum-map v1.1.1
[INFO] [stderr]    Compiling nalgebra v0.27.1
[INFO] [stderr]    Compiling serde_derive v1.0.219
[INFO] [stderr]    Compiling thiserror-impl v1.0.63
[INFO] [stderr]    Compiling pin-project-internal v1.1.10
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling getset v0.1.6
[INFO] [stderr]    Compiling strum_macros v0.27.2
[INFO] [stderr]    Compiling clap_derive v4.5.11
[INFO] [stderr]    Compiling pin-project v1.1.10
[INFO] [stderr]    Compiling flume v0.10.14
[INFO] [stderr]    Compiling xz2 v0.1.7
[INFO] [stderr]    Compiling bio-types v1.0.3
[INFO] [stderr]    Compiling clap v4.5.11
[INFO] [stderr]    Compiling strum v0.27.2
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling csv v1.3.0
[INFO] [stderr]    Compiling multimap v0.8.3
[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling flate2 v1.1.2
[INFO] [stderr]    Compiling gzp v0.10.1
[INFO] [stderr]    Compiling needletail v0.5.1
[INFO] [stderr]    Compiling statrs v0.15.0
[INFO] [stderr]    Compiling bio v0.41.0
[INFO] [stderr]    Compiling structopt v0.3.26
[INFO] [stderr]    Compiling rust-htslib v0.39.5
[INFO] [stderr]    Compiling perbase v1.0.0
[INFO] [stderr]    Compiling klassify v0.1.6 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 20s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 3`
[INFO] running `Command { std: "docker" "inspect" "5b8085580f66f26062b3659b62aeec952a071a69e920728cf21d0f792e751ce2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5b8085580f66f26062b3659b62aeec952a071a69e920728cf21d0f792e751ce2", kill_on_drop: false }`
[INFO] [stdout] 5b8085580f66f26062b3659b62aeec952a071a69e920728cf21d0f792e751ce2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 1144b602a0131d61df5d09cd7c57d88df836a3a3ab344d93330b8ee922ba30de
[INFO] running `Command { std: "docker" "start" "-a" "1144b602a0131d61df5d09cd7c57d88df836a3a3ab344d93330b8ee922ba30de", kill_on_drop: false }`
[INFO] [stderr]    Compiling getrandom v0.3.3
[INFO] [stderr]    Compiling filetime v0.2.25
[INFO] [stderr]    Compiling which v8.0.0
[INFO] [stderr]    Compiling tempfile v3.20.0
[INFO] [stderr]    Compiling klassify v0.1.6 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 7.65s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 3`
[INFO] running `Command { std: "docker" "inspect" "1144b602a0131d61df5d09cd7c57d88df836a3a3ab344d93330b8ee922ba30de", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1144b602a0131d61df5d09cd7c57d88df836a3a3ab344d93330b8ee922ba30de", kill_on_drop: false }`
[INFO] [stdout] 1144b602a0131d61df5d09cd7c57d88df836a3a3ab344d93330b8ee922ba30de
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] bbea60494c7258a9253965c42ce440c6b7475db74e626fe486712464e52188e4
[INFO] running `Command { std: "docker" "start" "-a" "bbea60494c7258a9253965c42ce440c6b7475db74e626fe486712464e52188e4", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.26s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 3`
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/klassify-3de327ef62d9a35b)
[INFO] [stdout] 
[INFO] [stdout] running 18 tests
[INFO] [stdout] test breakpoint::tests::breakpoint_fail_at_end ... ok
[INFO] [stdout] test build::tests::test_buildargs_parse_defaults ... ok
[INFO] [stdout] test tools::graph_matching::tests::test_greedy_basic ... ok
[INFO] [stdout] test breakpoint::tests::breakpoint_orientation_ba ... ok
[INFO] [stdout] test cluster_pairs::tests::test_cluster_overlaps_basic ... ok
[INFO] [stdout] test breakpoint::tests::breakpoint_not_enough_kmers ... ok
[INFO] [stdout] test utils::tests::prefix_extracts_basename ... ok
[INFO] [stdout] test utils::tests::prefix_until_dot_truncates_correctly ... ok
[INFO] [stdout] test build::tests::test_get_kmers_canonicalization ... ok
[INFO] [stdout] test cluster_pairs::tests::test_build_read_maps_and_pairs ... ok
[INFO] [stdout] test utils::tests::need_update_when_target_is_zero_bytes ... ok
[INFO] [stdout] test utils::tests::need_update_false_when_up_to_date ... ok
[INFO] [stdout] test utils::tests::need_update_when_target_missing ... ok
[INFO] [stdout] test utils::tests::sh_success_returns_true ... ok
[INFO] [stdout] test utils::tests::sh_failure_returns_false ... ok
[INFO] [stdout] test utils::tests::need_update_when_source_newer_than_target ... ok
[INFO] [stdout] test build::tests::test_build_finds_singletons_and_writes_bincode ... ok
[INFO] [stdout] test breakpoint::tests::breakpoint_pref_suf_orientation_ab ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 18 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.06s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/klassify-a9df27cc6d9d0f18)
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests klassify
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "bbea60494c7258a9253965c42ce440c6b7475db74e626fe486712464e52188e4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "bbea60494c7258a9253965c42ce440c6b7475db74e626fe486712464e52188e4", kill_on_drop: false }`
[INFO] [stdout] bbea60494c7258a9253965c42ce440c6b7475db74e626fe486712464e52188e4
