[INFO] cloning repository https://github.com/epiliper/tag_splitter
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/epiliper/tag_splitter" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fepiliper%2Ftag_splitter", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fepiliper%2Ftag_splitter'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 6ca240e88217cf4aeff4a1adfedf738a835e41fe
[INFO] checking epiliper/tag_splitter against try#63132bd615c9bf75e93af8405d00064212331708 for pr-153975
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fepiliper%2Ftag_splitter" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/epiliper/tag_splitter
[INFO] finished tweaking git repo https://github.com/epiliper/tag_splitter
[INFO] tweaked toml for git repo https://github.com/epiliper/tag_splitter written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/epiliper/tag_splitter on toolchain 63132bd615c9bf75e93af8405d00064212331708
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+63132bd615c9bf75e93af8405d00064212331708" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/epiliper/tag_splitter already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+63132bd615c9bf75e93af8405d00064212331708" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] checking epiliper/tag_splitter against try#63132bd615c9bf75e93af8405d00064212331708 for pr-153975
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fepiliper%2Ftag_splitter" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/epiliper/tag_splitter
[INFO] finished tweaking git repo https://github.com/epiliper/tag_splitter
[INFO] tweaked toml for git repo https://github.com/epiliper/tag_splitter written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/epiliper/tag_splitter on toolchain 63132bd615c9bf75e93af8405d00064212331708
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+63132bd615c9bf75e93af8405d00064212331708" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/epiliper/tag_splitter already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+63132bd615c9bf75e93af8405d00064212331708" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded thiserror v2.0.14
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded thiserror-impl v2.0.14
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded cc v1.2.32
[INFO] [stderr]   Downloaded rust-htslib v0.50.0
[INFO] [stderr]   Downloaded lzma-sys v0.1.20
[INFO] [stderr]   Downloaded curl-sys v0.4.83+curl-8.15.0
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] [stderr]   Downloaded openssl-src v300.5.2+3.5.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+63132bd615c9bf75e93af8405d00064212331708" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 2b0b58dd501b9b9f47c18be91f43954d7001dc35c33cee27a4d70f395d97325b
[INFO] running `Command { std: "docker" "start" "-a" "2b0b58dd501b9b9f47c18be91f43954d7001dc35c33cee27a4d70f395d97325b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "2b0b58dd501b9b9f47c18be91f43954d7001dc35c33cee27a4d70f395d97325b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2b0b58dd501b9b9f47c18be91f43954d7001dc35c33cee27a4d70f395d97325b", kill_on_drop: false }`
[INFO] [stdout] 2b0b58dd501b9b9f47c18be91f43954d7001dc35c33cee27a4d70f395d97325b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+63132bd615c9bf75e93af8405d00064212331708" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4ad985b5b2d67b8a8d4058d4b5d45c0f3b0fed1a34c5eb1ed0d6ced8b2063561
[INFO] running `Command { std: "docker" "start" "-a" "4ad985b5b2d67b8a8d4058d4b5d45c0f3b0fed1a34c5eb1ed0d6ced8b2063561", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.97
[INFO] [stderr]    Compiling glob v0.3.3
[INFO] [stderr]    Compiling cfg-if v1.0.1
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]     Checking memchr v2.7.5
[INFO] [stderr]     Checking smallvec v1.15.1
[INFO] [stderr]    Compiling jobserver v0.1.33
[INFO] [stderr]    Compiling bitflags v2.9.1
[INFO] [stderr]    Compiling thiserror v2.0.14
[INFO] [stderr]     Checking clap_builder v4.5.44
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]    Compiling libloading v0.8.8
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling cc v1.2.32
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking iana-time-zone v0.1.63
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking indexmap v2.10.0
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]     Checking num_cpus v1.17.0
[INFO] [stderr]     Checking chrono v0.4.41
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]    Compiling syn v2.0.104
[INFO] [stderr]    Compiling cmake v0.1.54
[INFO] [stderr]    Compiling openssl-src v300.5.2+3.5.2
[INFO] [stderr]     Checking regex-automata v0.4.9
[INFO] [stderr]    Compiling libz-sys v1.1.22
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling curl-sys v0.4.83+curl-8.15.0
[INFO] [stderr]    Compiling openssl-sys v0.9.109
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.8.0
[INFO] [stderr]    Compiling zerovec-derive v0.11.1
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling thiserror-impl v2.0.14
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]    Compiling clap_derive v4.5.45
[INFO] [stderr]     Checking zerofrom v0.1.6
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking yoke v0.8.0
[INFO] [stderr]     Checking zerovec v0.11.4
[INFO] [stderr]     Checking zerotrie v0.2.2
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking clap v4.5.45
[INFO] [stderr]     Checking tinystr v0.8.1
[INFO] [stderr]     Checking potential_utf v0.1.2
[INFO] [stderr]     Checking icu_collections v2.0.0
[INFO] [stderr]     Checking icu_locale_core v2.0.0
[INFO] [stderr]     Checking icu_provider v2.0.0
[INFO] [stderr]     Checking icu_normalizer v2.0.0
[INFO] [stderr]     Checking icu_properties v2.0.1
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]     Checking idna_adapter v1.2.1
[INFO] [stderr]     Checking idna v1.0.3
[INFO] [stderr]     Checking url v2.5.4
[INFO] [stderr]     Checking rust-htslib v0.50.0
[INFO] [stderr]     Checking tag_splitter v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:428:9
[INFO] [stdout]     |
[INFO] [stdout] 428 |     let mut n_clusters_with_indels = 0;
[INFO] [stdout]     |         ----^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |         |
[INFO] [stdout]     |         help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:428:9
[INFO] [stdout]     |
[INFO] [stdout] 428 |     let mut n_clusters_with_indels = 0;
[INFO] [stdout]     |         ----^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |         |
[INFO] [stdout]     |         help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `contains_indels` is never used
[INFO] [stdout]    --> src/main.rs:200:8
[INFO] [stdout]     |
[INFO] [stdout] 184 | impl SeqMap {
[INFO] [stdout]     | ----------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 200 |     fn contains_indels(&self) -> bool {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `contains_indels` is never used
[INFO] [stdout]    --> src/main.rs:200:8
[INFO] [stdout]     |
[INFO] [stdout] 184 | impl SeqMap {
[INFO] [stdout]     | ----------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 200 |     fn contains_indels(&self) -> bool {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 41.71s
[INFO] running `Command { std: "docker" "inspect" "4ad985b5b2d67b8a8d4058d4b5d45c0f3b0fed1a34c5eb1ed0d6ced8b2063561", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4ad985b5b2d67b8a8d4058d4b5d45c0f3b0fed1a34c5eb1ed0d6ced8b2063561", kill_on_drop: false }`
[INFO] [stdout] 4ad985b5b2d67b8a8d4058d4b5d45c0f3b0fed1a34c5eb1ed0d6ced8b2063561
