[INFO] cloning repository https://github.com/rhysnewell/Kallisto_Indexer
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/rhysnewell/Kallisto_Indexer" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frhysnewell%2FKallisto_Indexer", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frhysnewell%2FKallisto_Indexer'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] fb2da531c4e51b75f98c9782bc949a5d3d711a18
[INFO] checking rhysnewell/Kallisto_Indexer/fb2da531c4e51b75f98c9782bc949a5d3d711a18 against master#3645249d79dfb136b5d8de3ce153d19d6698d92d for pr-153975
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frhysnewell%2FKallisto_Indexer" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/rhysnewell/Kallisto_Indexer
[INFO] finished tweaking git repo https://github.com/rhysnewell/Kallisto_Indexer
[INFO] tweaked toml for git repo https://github.com/rhysnewell/Kallisto_Indexer written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/rhysnewell/Kallisto_Indexer on toolchain 3645249d79dfb136b5d8de3ce153d19d6698d92d
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3645249d79dfb136b5d8de3ce153d19d6698d92d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/rhysnewell/Kallisto_Indexer already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3645249d79dfb136b5d8de3ce153d19d6698d92d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: `package.edition` is unspecified, defaulting to `2015` while the latest is `2024`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/rust-bio/rust-htslib`
[INFO] [stderr]     Updating git submodule `https://github.com/samtools/htslib.git`
[INFO] [stderr]     Updating git repository `https://github.com/alexcrichton/bzip2-rs.git`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded proc-macro2 v0.4.19
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+3645249d79dfb136b5d8de3ce153d19d6698d92d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 53fabee0fe4ae059507e7046414e59f0794626cf5b5378e92aa43c488a03196c
[INFO] running `Command { std: "docker" "start" "-a" "53fabee0fe4ae059507e7046414e59f0794626cf5b5378e92aa43c488a03196c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "53fabee0fe4ae059507e7046414e59f0794626cf5b5378e92aa43c488a03196c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "53fabee0fe4ae059507e7046414e59f0794626cf5b5378e92aa43c488a03196c", kill_on_drop: false }`
[INFO] [stdout] 53fabee0fe4ae059507e7046414e59f0794626cf5b5378e92aa43c488a03196c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+3645249d79dfb136b5d8de3ce153d19d6698d92d" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] d9dc6b37b9439d3a52fa5e5a471c8bc554e164528db9af3771dc6ac55366cfb7
[INFO] running `Command { std: "docker" "start" "-a" "d9dc6b37b9439d3a52fa5e5a471c8bc554e164528db9af3771dc6ac55366cfb7", kill_on_drop: false }`
[INFO] [stderr] warning: `package.edition` is unspecified, defaulting to `2015` while the latest is `2024`
[INFO] [stderr]    Compiling version_check v0.1.5
[INFO] [stderr]    Compiling proc-macro2 v0.4.19
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[INFO] [stderr]     Checking num-traits v0.1.43
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[INFO] [stderr]     Checking lazy_static v0.2.11
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[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]    Compiling failure_derive v0.1.2
[INFO] [stderr]     Checking rand_core v0.2.1
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[INFO] [stderr]     Checking tempfile v3.0.4
[INFO] [stderr]     Checking itoa v0.4.3
[INFO] [stderr]     Checking colored v1.6.1
[INFO] [stderr]     Checking backtrace v0.3.9
[INFO] [stderr]     Checking difference v2.0.0
[INFO] [stderr]     Checking environment v0.1.1
[INFO] [stderr]    Compiling serde_derive v1.0.79
[INFO] [stderr]    Compiling synstructure v0.9.0
[INFO] [stderr]    Compiling env_logger v0.5.13
[INFO] [stderr]     Checking env_logger v0.4.3
[INFO] [stderr]     Checking failure v0.1.2
[INFO] [stderr]     Checking vec_map v0.8.1
[INFO] [stderr]     Checking bio-types v0.3.0
[INFO] [stderr]     Checking multimap v0.4.0
[INFO] [stderr]     Checking csv v1.0.2
[INFO] [stderr]     Checking serde_json v1.0.31
[INFO] [stderr]     Checking clap v2.32.0
[INFO] [stderr]     Checking bio v0.20.3
[INFO] [stderr]     Checking assert_cli v0.6.3
[INFO] [stderr]    Compiling rust-htslib v0.21.1-alpha.0 (https://github.com/rust-bio/rust-htslib#1f9736ef)
[INFO] [stdout] error: expected one of `!`, `(`, `+`, `::`, or `<`, found `/`
[INFO] [stdout]   --> /opt/rustwide/target/debug/build/rust-htslib-665c79aeadc8b75b/out/bindings.rs:85:31536
[INFO] [stdout]    |
[INFO] [stdout] 85 | ...ct htsFormat { pub category : htsFormatCategory , pub format : htsExactFormat , pub version : htsFormat_struct_(unnamed_at__/htsl...
[INFO] [stdout]    |       --------- while parsing this struct                                                                                      ^ expected one of `!`, `(`, `+`, `::`, or `<`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: expected one of `!`, `(`, `)`, `+`, `,`, `::`, or `<`, found `/`
[INFO] [stdout]   --> /opt/rustwide/target/debug/build/rust-htslib-665c79aeadc8b75b/out/bindings.rs:85:31809
[INFO] [stdout]    |
[INFO] [stdout] 85 | ...e ) ] pub struct htsFormat_struct_(unnamed_at__/htslib/htslib/hts_h_154_5) { pub major : :: std :: os :: raw :: c_short , pub min...
[INFO] [stdout]    |                                                   ^ expected one of 7 possible tokens
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bam_pileup1_t` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/pileup.rs:17:29
[INFO] [stdout]    |
[INFO] [stdout] 17 |     slice::Iter<'a, htslib::bam_pileup1_t>,
[INFO] [stdout]    |                             ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bam_pileup1_t` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/pileup.rs:18:20
[INFO] [stdout]    |
[INFO] [stdout] 18 |     fn(&'a htslib::bam_pileup1_t) -> Alignment<'a>,
[INFO] [stdout]    |                    ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bam_pileup1_t` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/pileup.rs:24:27
[INFO] [stdout]    |
[INFO] [stdout] 24 |     inner: *const htslib::bam_pileup1_t,
[INFO] [stdout]    |                           ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bam_pileup1_t` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/pileup.rs:47:34
[INFO] [stdout]    |
[INFO] [stdout] 47 |     fn inner(&self) -> &[htslib::bam_pileup1_t] {
[INFO] [stdout]    |                                  ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bam_pileup1_t` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/pileup.rs:50:44
[INFO] [stdout]    |
[INFO] [stdout] 50 |                 self.inner as *mut htslib::bam_pileup1_t,
[INFO] [stdout]    |                                            ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bam_pileup1_t` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/pileup.rs:59:24
[INFO] [stdout]    |
[INFO] [stdout] 59 |     inner: &'a htslib::bam_pileup1_t,
[INFO] [stdout]    |                        ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bam_pileup1_t` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/pileup.rs:69:35
[INFO] [stdout]    |
[INFO] [stdout] 69 |     pub fn new(inner: &'a htslib::bam_pileup1_t) -> Self {
[INFO] [stdout]    |                                   ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bam_plp_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/pileup.rs:130:18
[INFO] [stdout]     |
[INFO] [stdout] 130 |     itr: htslib::bam_plp_t,
[INFO] [stdout]     |                  ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bam_plp_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/pileup.rs:134:48
[INFO] [stdout]     |
[INFO] [stdout] 134 |     pub fn new(reader: &'a mut R, itr: htslib::bam_plp_t) -> Self {
[INFO] [stdout]     |                                                ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_plp_set_maxcnt` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/pileup.rs:143:21
[INFO] [stdout]     |
[INFO] [stdout] 143 |             htslib::bam_plp_set_maxcnt(self.itr, depth as i32);
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_plp_auto` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/pileup.rs:153:38
[INFO] [stdout]     |
[INFO] [stdout] 153 |         let inner = unsafe { htslib::bam_plp_auto(self.itr, &mut tid, &mut pos, &mut depth) };
[INFO] [stdout]     |                                      ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_plp_reset` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/pileup.rs:171:21
[INFO] [stdout]     |
[INFO] [stdout] 171 |             htslib::bam_plp_reset(self.itr);
[INFO] [stdout]     |                     ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_plp_destroy` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/pileup.rs:172:21
[INFO] [stdout]     |
[INFO] [stdout] 172 |             htslib::bam_plp_destroy(self.itr);
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bam1_t` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/record.rs:57:29
[INFO] [stdout]    |
[INFO] [stdout] 57 |     pub inner: *mut htslib::bam1_t,
[INFO] [stdout]    |                             ^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_copy1` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/record.rs:68:26
[INFO] [stdout]    |
[INFO] [stdout] 68 |         unsafe { htslib::bam_copy1(copy.inner, self.inner) };
[INFO] [stdout]    |                          ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_init1` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/record.rs:102:38
[INFO] [stdout]     |
[INFO] [stdout] 102 |         let inner = unsafe { htslib::bam_init1() };
[INFO] [stdout]     |                                      ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bam1_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/record.rs:112:43
[INFO] [stdout]     |
[INFO] [stdout] 112 |     pub fn from_inner(inner: *mut htslib::bam1_t) -> Self {
[INFO] [stdout]     |                                           ^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `sam_parse1` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/record.rs:135:21
[INFO] [stdout]     |
[INFO] [stdout] 135 |             htslib::sam_parse1(&mut sam_string, header_view.inner_ptr_mut(), record.inner)
[INFO] [stdout]     |                     ^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bam1_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/record.rs:150:49
[INFO] [stdout]     |
[INFO] [stdout] 150 |     pub fn inner_mut(&mut self) -> &mut htslib::bam1_t {
[INFO] [stdout]     |                                                 ^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bam1_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/record.rs:155:37
[INFO] [stdout]     |
[INFO] [stdout] 155 |     pub fn inner(&self) -> &htslib::bam1_t {
[INFO] [stdout]     |                                     ^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_aux_get` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/record.rs:468:21
[INFO] [stdout]     |
[INFO] [stdout] 468 |             htslib::bam_aux_get(
[INFO] [stdout]     |                     ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_aux2i` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/record.rs:480:47
[INFO] [stdout]     |
[INFO] [stdout] 480 |                     Some(Aux::Integer(htslib::bam_aux2i(aux) as i64))
[INFO] [stdout]     |                                               ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_aux2f` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/record.rs:482:56
[INFO] [stdout]     |
[INFO] [stdout] 482 |                 b'f' | b'd' => Some(Aux::Float(htslib::bam_aux2f(aux))),
[INFO] [stdout]     |                                                        ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_aux2A` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/record.rs:483:48
[INFO] [stdout]     |
[INFO] [stdout] 483 |                 b'A' => Some(Aux::Char(htslib::bam_aux2A(aux) as u8)),
[INFO] [stdout]     |                                                ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_aux_append` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/record.rs:500:44
[INFO] [stdout]     |
[INFO] [stdout] 500 |                 Aux::Integer(v) => htslib::bam_aux_append(
[INFO] [stdout]     |                                            ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_aux_append` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/record.rs:507:42
[INFO] [stdout]     |
[INFO] [stdout] 507 |                 Aux::Float(v) => htslib::bam_aux_append(
[INFO] [stdout]     |                                          ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_aux_append` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/record.rs:514:41
[INFO] [stdout]     |
[INFO] [stdout] 514 |                 Aux::Char(v) => htslib::bam_aux_append(
[INFO] [stdout]     |                                         ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_aux_append` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/record.rs:521:43
[INFO] [stdout]     |
[INFO] [stdout] 521 |                 Aux::String(v) => htslib::bam_aux_append(
[INFO] [stdout]     |                                           ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_aux_get` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/record.rs:541:21
[INFO] [stdout]     |
[INFO] [stdout] 541 |             htslib::bam_aux_get(
[INFO] [stdout]     |                     ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_aux_del` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/record.rs:550:25
[INFO] [stdout]     |
[INFO] [stdout] 550 |                 htslib::bam_aux_del(self.inner, aux);
[INFO] [stdout]     |                         ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_destroy1` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/record.rs:598:30
[INFO] [stdout]     |
[INFO] [stdout] 598 |             unsafe { htslib::bam_destroy1(self.inner) };
[INFO] [stdout]     |                              ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `BGZF` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:30:39
[INFO] [stdout]    |
[INFO] [stdout] 30 | pub fn set_threads(bgzf: *mut htslib::BGZF, n_threads: usize) -> Result<(), ThreadingError> {
[INFO] [stdout]    |                                       ^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bgzf_mt` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:33:25
[INFO] [stdout]    |
[INFO] [stdout] 33 |     if unsafe { htslib::bgzf_mt(bgzf, n_threads as i32, 256) } != 0 {
[INFO] [stdout]    |                         ^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `BGZF` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:61:36
[INFO] [stdout]    |
[INFO] [stdout] 61 |     fn bgzf(&self) -> *mut htslib::BGZF;
[INFO] [stdout]    |                                    ^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bgzf_seek` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:68:36
[INFO] [stdout]    |
[INFO] [stdout] 68 |         let ret = unsafe { htslib::bgzf_seek(self.bgzf(), offset, libc::SEEK_SET) };
[INFO] [stdout]    |                                    ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `BGZF` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:100:24
[INFO] [stdout]     |
[INFO] [stdout] 100 |     bgzf: *mut htslib::BGZF,
[INFO] [stdout]     |                        ^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_hdr_read` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:136:39
[INFO] [stdout]     |
[INFO] [stdout] 136 |         let header = unsafe { htslib::bam_hdr_read(bgzf) };
[INFO] [stdout]     |                                       ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bam1_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:145:30
[INFO] [stdout]     |
[INFO] [stdout] 145 |         record: *mut htslib::bam1_t,
[INFO] [stdout]     |                              ^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_read1` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:148:26
[INFO] [stdout]     |
[INFO] [stdout] 148 |         unsafe { htslib::bam_read1(_self.bgzf, record) }
[INFO] [stdout]     |                          ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_read1` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:174:32
[INFO] [stdout]     |
[INFO] [stdout] 174 |         match unsafe { htslib::bam_read1(self.bgzf, record.inner) } {
[INFO] [stdout]     |                                ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_plp_init` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:193:21
[INFO] [stdout]     |
[INFO] [stdout] 193 |             htslib::bam_plp_init(
[INFO] [stdout]     |                     ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `BGZF` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:201:36
[INFO] [stdout]     |
[INFO] [stdout] 201 |     fn bgzf(&self) -> *mut htslib::BGZF {
[INFO] [stdout]     |                                    ^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bgzf_close` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:213:21
[INFO] [stdout]     |
[INFO] [stdout] 213 |             htslib::bgzf_close(self.bgzf);
[INFO] [stdout]     |                     ^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `BGZF` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:220:24
[INFO] [stdout]     |
[INFO] [stdout] 220 |     bgzf: *mut htslib::BGZF,
[INFO] [stdout]     |                        ^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `hts_idx_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:222:23
[INFO] [stdout]     |
[INFO] [stdout] 222 |     idx: *mut htslib::hts_idx_t,
[INFO] [stdout]     |                       ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `hts_itr_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:223:30
[INFO] [stdout]     |
[INFO] [stdout] 223 |     itr: Option<*mut htslib::hts_itr_t>,
[INFO] [stdout]     |                              ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_hdr_read` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:254:39
[INFO] [stdout]     |
[INFO] [stdout] 254 |         let header = unsafe { htslib::bam_hdr_read(bgzf) };
[INFO] [stdout]     |                                       ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_idx_load` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:255:36
[INFO] [stdout]     |
[INFO] [stdout] 255 |         let idx = unsafe { htslib::hts_idx_load(path.as_ptr(), htslib::HTS_FMT_BAI as i32) };
[INFO] [stdout]     |                                    ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_itr_destroy` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:270:30
[INFO] [stdout]     |
[INFO] [stdout] 270 |             unsafe { htslib::hts_itr_destroy(itr) }
[INFO] [stdout]     |                              ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `sam_itr_queryi` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:272:36
[INFO] [stdout]     |
[INFO] [stdout] 272 |         let itr = unsafe { htslib::sam_itr_queryi(self.idx, tid as i32, beg as i32, end as i32) };
[INFO] [stdout]     |                                    ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bam1_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:284:30
[INFO] [stdout]     |
[INFO] [stdout] 284 |         record: *mut htslib::bam1_t,
[INFO] [stdout]     |                              ^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_read1` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:289:38
[INFO] [stdout]     |
[INFO] [stdout] 289 |             None => unsafe { htslib::bam_read1(_self.bgzf, record) }, // ordinary reading
[INFO] [stdout]     |                                      ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_plp_init` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:318:21
[INFO] [stdout]     |
[INFO] [stdout] 318 |             htslib::bam_plp_init(
[INFO] [stdout]     |                     ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `BGZF` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:326:36
[INFO] [stdout]     |
[INFO] [stdout] 326 |     fn bgzf(&self) -> *mut htslib::BGZF {
[INFO] [stdout]     |                                    ^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_itr_destroy` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:339:25
[INFO] [stdout]     |
[INFO] [stdout] 339 |                 htslib::hts_itr_destroy(self.itr.unwrap());
[INFO] [stdout]     |                         ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_idx_destroy` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:341:21
[INFO] [stdout]     |
[INFO] [stdout] 341 |             htslib::hts_idx_destroy(self.idx);
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bgzf_close` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:342:21
[INFO] [stdout]     |
[INFO] [stdout] 342 |             htslib::bgzf_close(self.bgzf);
[INFO] [stdout]     |                     ^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `BGZF` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:350:21
[INFO] [stdout]     |
[INFO] [stdout] 350 |     f: *mut htslib::BGZF,
[INFO] [stdout]     |                     ^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `sam_hdr_parse` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:411:31
[INFO] [stdout]     |
[INFO] [stdout] 411 |             let rec = htslib::sam_hdr_parse((l_text + 1) as i32, text as *const i8);
[INFO] [stdout]     |                               ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_hdr_write` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:419:21
[INFO] [stdout]     |
[INFO] [stdout] 419 |             htslib::bam_hdr_write(f, header_record);
[INFO] [stdout]     |                     ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_write1` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:444:29
[INFO] [stdout]     |
[INFO] [stdout] 444 |         if unsafe { htslib::bam_write1(self.f, record.inner) } == -1 {
[INFO] [stdout]     |                             ^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bgzf_close` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:460:21
[INFO] [stdout]     |
[INFO] [stdout] 460 |             htslib::bgzf_close(self.f);
[INFO] [stdout]     |                     ^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `BGZF` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:635:68
[INFO] [stdout]     |
[INFO] [stdout] 635 | fn bgzf_open(path: &ffi::CStr, mode: &[u8]) -> Result<*mut htslib::BGZF, BGZFError> {
[INFO] [stdout]     |                                                                    ^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bgzf_open` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:637:26
[INFO] [stdout]     |
[INFO] [stdout] 637 |         unsafe { htslib::bgzf_open(path.as_ptr(), ffi::CString::new(mode).unwrap().as_ptr()) };
[INFO] [stdout]     |                          ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `BGZF` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:647:24
[INFO] [stdout]     |
[INFO] [stdout] 647 |     bgzf: *mut htslib::BGZF,
[INFO] [stdout]     |                        ^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `hts_itr_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:648:23
[INFO] [stdout]     |
[INFO] [stdout] 648 |     itr: *mut htslib::hts_itr_t,
[INFO] [stdout]     |                       ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bam1_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:649:26
[INFO] [stdout]     |
[INFO] [stdout] 649 |     record: *mut htslib::bam1_t,
[INFO] [stdout]     |                          ^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_itr_next` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:652:17
[INFO] [stdout]     |
[INFO] [stdout] 652 |         htslib::hts_itr_next(
[INFO] [stdout]     |                 ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bam_hdr_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:663:25
[INFO] [stdout]     |
[INFO] [stdout] 663 |     inner: *mut htslib::bam_hdr_t,
[INFO] [stdout]     |                         ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `sam_hdr_parse` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:689:31
[INFO] [stdout]     |
[INFO] [stdout] 689 |             let rec = htslib::sam_hdr_parse((l_text + 1) as i32, text as *const i8);
[INFO] [stdout]     |                               ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bam_hdr_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:699:36
[INFO] [stdout]     |
[INFO] [stdout] 699 |     pub fn new(inner: *mut htslib::bam_hdr_t) -> Self {
[INFO] [stdout]     |                                    ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bam_hdr_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:707:36
[INFO] [stdout]     |
[INFO] [stdout] 707 |     pub fn inner(&self) -> htslib::bam_hdr_t {
[INFO] [stdout]     |                                    ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bam_hdr_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:713:47
[INFO] [stdout]     |
[INFO] [stdout] 713 |     pub fn inner_ptr(&self) -> *const htslib::bam_hdr_t {
[INFO] [stdout]     |                                               ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bam_hdr_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:719:49
[INFO] [stdout]     |
[INFO] [stdout] 719 |     pub fn inner_ptr_mut(&self) -> *mut htslib::bam_hdr_t {
[INFO] [stdout]     |                                                 ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_name2id` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:725:21
[INFO] [stdout]     |
[INFO] [stdout] 725 |             htslib::bam_name2id(
[INFO] [stdout]     |                     ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_hdr_dup` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:774:37
[INFO] [stdout]     |
[INFO] [stdout] 774 |             inner: unsafe { htslib::bam_hdr_dup(self.inner) },
[INFO] [stdout]     |                                     ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_hdr_destroy` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bam/mod.rs:784:25
[INFO] [stdout]     |
[INFO] [stdout] 784 |                 htslib::bam_hdr_destroy(self.inner);
[INFO] [stdout]     |                         ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bcf_hdr_t` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/header.rs:35:29
[INFO] [stdout]    |
[INFO] [stdout] 35 |     pub inner: *mut htslib::bcf_hdr_t,
[INFO] [stdout]    |                             ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_init` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/header.rs:43:37
[INFO] [stdout]    |
[INFO] [stdout] 43 |             inner: unsafe { htslib::bcf_hdr_init(ffi::CString::new(&b"w"[..]).unwrap().as_ptr()) },
[INFO] [stdout]    |                                     ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_dup` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/header.rs:57:37
[INFO] [stdout]    |
[INFO] [stdout] 57 |             inner: unsafe { htslib::bcf_hdr_dup(header.inner) },
[INFO] [stdout]    |                                     ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_subset` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/header.rs:80:21
[INFO] [stdout]    |
[INFO] [stdout] 80 |             htslib::bcf_hdr_subset(
[INFO] [stdout]    |                     ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_add_sample` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/header.rs:104:21
[INFO] [stdout]     |
[INFO] [stdout] 104 |             htslib::bcf_hdr_add_sample(self.inner, ffi::CString::new(sample).unwrap().as_ptr())
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_append` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/header.rs:121:26
[INFO] [stdout]     |
[INFO] [stdout] 121 |         unsafe { htslib::bcf_hdr_append(self.inner, ffi::CString::new(record).unwrap().as_ptr()) };
[INFO] [stdout]     |                          ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_remove` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/header.rs:184:21
[INFO] [stdout]     |
[INFO] [stdout] 184 |             htslib::bcf_hdr_remove(self.inner, type_ as i32, c_str.as_ptr());
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_destroy` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/header.rs:192:26
[INFO] [stdout]     |
[INFO] [stdout] 192 |         unsafe { htslib::bcf_hdr_destroy(self.inner) };
[INFO] [stdout]     |                          ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bcf_hdr_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/header.rs:230:29
[INFO] [stdout]     |
[INFO] [stdout] 230 |     pub inner: *mut htslib::bcf_hdr_t,
[INFO] [stdout]     |                             ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bcf_hdr_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/header.rs:234:36
[INFO] [stdout]     |
[INFO] [stdout] 234 |     pub fn new(inner: *mut htslib::bcf_hdr_t) -> Self {
[INFO] [stdout]     |                                    ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bcf_hdr_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/header.rs:239:32
[INFO] [stdout]     |
[INFO] [stdout] 239 |     fn inner(&self) -> htslib::bcf_hdr_t {
[INFO] [stdout]     |                                ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_id2int` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/header.rs:266:27
[INFO] [stdout]     |
[INFO] [stdout] 266 |             match htslib::bcf_hdr_id2int(
[INFO] [stdout]     |                           ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_id2int` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/header.rs:293:30
[INFO] [stdout]     |
[INFO] [stdout] 293 |             let id = htslib::bcf_hdr_id2int(
[INFO] [stdout]     |                              ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_id2int` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/header.rs:330:27
[INFO] [stdout]     |
[INFO] [stdout] 330 |             match htslib::bcf_hdr_id2int(
[INFO] [stdout]     |                           ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_id2int` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/header.rs:355:27
[INFO] [stdout]     |
[INFO] [stdout] 355 |             match htslib::bcf_hdr_id2int(
[INFO] [stdout]     |                           ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bcf_hrec_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/header.rs:380:35
[INFO] [stdout]     |
[INFO] [stdout] 380 |         fn parse_kv(rec: &htslib::bcf_hrec_t) -> LinearMap<String, String> {
[INFO] [stdout]     |                                   ^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_dup` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/header.rs:440:37
[INFO] [stdout]     |
[INFO] [stdout] 440 |             inner: unsafe { htslib::bcf_hdr_dup(self.inner) },
[INFO] [stdout]     |                                     ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_destroy` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/header.rs:448:21
[INFO] [stdout]     |
[INFO] [stdout] 448 |             htslib::bcf_hdr_destroy(self.inner);
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bcf1_t` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:77:29
[INFO] [stdout]    |
[INFO] [stdout] 77 |     pub inner: *mut htslib::bcf1_t,
[INFO] [stdout]    |                             ^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_init` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:86:33
[INFO] [stdout]    |
[INFO] [stdout] 86 |             let inner = htslib::bcf_init();
[INFO] [stdout]    |                                 ^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_unpack` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:88:21
[INFO] [stdout]    |
[INFO] [stdout] 88 |             htslib::bcf_unpack(inner, htslib::BCF_UN_ALL as i32);
[INFO] [stdout]    |                     ^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_unpack` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:100:26
[INFO] [stdout]     |
[INFO] [stdout] 100 |         unsafe { htslib::bcf_unpack(self.inner, htslib::BCF_UN_ALL as i32) };
[INFO] [stdout]     |                          ^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bcf1_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:119:37
[INFO] [stdout]     |
[INFO] [stdout] 119 |     pub fn inner(&self) -> &htslib::bcf1_t {
[INFO] [stdout]     |                                     ^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bcf1_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:129:49
[INFO] [stdout]     |
[INFO] [stdout] 129 |     pub fn inner_mut(&mut self) -> &mut htslib::bcf1_t {
[INFO] [stdout]     |                                                 ^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_update_id` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:181:21
[INFO] [stdout]     |
[INFO] [stdout] 181 |             htslib::bcf_update_id(
[INFO] [stdout]     |                     ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_update_id` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:197:21
[INFO] [stdout]     |
[INFO] [stdout] 197 |             htslib::bcf_update_id(
[INFO] [stdout]     |                     ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_add_id` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:213:21
[INFO] [stdout]     |
[INFO] [stdout] 213 |             htslib::bcf_add_id(
[INFO] [stdout]     |                     ^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_update_filter` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:260:21
[INFO] [stdout]     |
[INFO] [stdout] 260 |             htslib::bcf_update_filter(
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_add_filter` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:279:21
[INFO] [stdout]     |
[INFO] [stdout] 279 |             htslib::bcf_add_filter(self.header().inner, self.inner, *flt_id as i32);
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_remove_filter` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:291:21
[INFO] [stdout]     |
[INFO] [stdout] 291 |             htslib::bcf_remove_filter(
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_unpack` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:304:26
[INFO] [stdout]     |
[INFO] [stdout] 304 |         unsafe { htslib::bcf_unpack(self.inner, htslib::BCF_UN_ALL as i32) };
[INFO] [stdout]     |                          ^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_update_alleles` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:324:21
[INFO] [stdout]     |
[INFO] [stdout] 324 |             htslib::bcf_update_alleles(
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_update_format` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:430:24
[INFO] [stdout]     |
[INFO] [stdout] 430 |             if htslib::bcf_update_format(
[INFO] [stdout]     |                        ^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_update_format_string` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:469:24
[INFO] [stdout]     |
[INFO] [stdout] 469 |             if htslib::bcf_update_format_string(
[INFO] [stdout]     |                        ^^^^^^^^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_update_info` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:508:24
[INFO] [stdout]     |
[INFO] [stdout] 508 |             if htslib::bcf_update_info(
[INFO] [stdout]     |                        ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_update_info` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:565:24
[INFO] [stdout]     |
[INFO] [stdout] 565 |             if htslib::bcf_update_info(
[INFO] [stdout]     |                        ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_trim_alleles` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:583:32
[INFO] [stdout]     |
[INFO] [stdout] 583 |         match unsafe { htslib::bcf_trim_alleles(self.header().inner, self.inner) } {
[INFO] [stdout]     |                                ^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `kbs_init` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:590:39
[INFO] [stdout]     |
[INFO] [stdout] 590 |         let rm_set = unsafe { htslib::kbs_init(remove.len()) };
[INFO] [stdout]     |                                       ^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `kbs_insert` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:595:29
[INFO] [stdout]     |
[INFO] [stdout] 595 |                     htslib::kbs_insert(rm_set, i as i32);
[INFO] [stdout]     |                             ^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_remove_allele_set` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:600:36
[INFO] [stdout]     |
[INFO] [stdout] 600 |         let ret = unsafe { htslib::bcf_remove_allele_set(self.header().inner, self.inner, rm_set) };
[INFO] [stdout]     |                                    ^^^^^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `kbs_destroy` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:603:21
[INFO] [stdout]     |
[INFO] [stdout] 603 |             htslib::kbs_destroy(rm_set);
[INFO] [stdout]     |                     ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_destroy` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:705:26
[INFO] [stdout]     |
[INFO] [stdout] 705 |         unsafe { htslib::bcf_destroy(self.inner) };
[INFO] [stdout]     |                          ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_get_info_values` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:723:21
[INFO] [stdout]     |
[INFO] [stdout] 723 |             htslib::bcf_get_info_values(
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bcf_fmt_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:801:25
[INFO] [stdout]     |
[INFO] [stdout] 801 |     inner: *mut htslib::bcf_fmt_t,
[INFO] [stdout]     |                         ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_get_fmt` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:808:21
[INFO] [stdout]     |
[INFO] [stdout] 808 |             htslib::bcf_get_fmt(
[INFO] [stdout]     |                     ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bcf_fmt_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:821:37
[INFO] [stdout]     |
[INFO] [stdout] 821 |     pub fn inner(&self) -> &htslib::bcf_fmt_t {
[INFO] [stdout]     |                                     ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bcf_fmt_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:825:49
[INFO] [stdout]     |
[INFO] [stdout] 825 |     pub fn inner_mut(&mut self) -> &mut htslib::bcf_fmt_t {
[INFO] [stdout]     |                                                 ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_get_format_values` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/record.rs:837:21
[INFO] [stdout]     |
[INFO] [stdout] 837 |             htslib::bcf_get_format_values(
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `htsFile` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:65:25
[INFO] [stdout]    |
[INFO] [stdout] 65 |     inner: *mut htslib::htsFile,
[INFO] [stdout]    |                         ^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `htsFile` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:72:43
[INFO] [stdout]    |
[INFO] [stdout] 72 | pub fn set_threads(hts_file: *mut htslib::htsFile, n_threads: usize) -> Result<(), ThreadingError> {
[INFO] [stdout]    |                                           ^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_set_threads` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:75:30
[INFO] [stdout]    |
[INFO] [stdout] 75 |     let r = unsafe { htslib::hts_set_threads(hts_file, n_threads as i32) };
[INFO] [stdout]    |                              ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_read` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:104:39
[INFO] [stdout]     |
[INFO] [stdout] 104 |         let header = unsafe { htslib::bcf_hdr_read(htsfile) };
[INFO] [stdout]     |                                       ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_read` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:114:32
[INFO] [stdout]     |
[INFO] [stdout] 114 |         match unsafe { htslib::bcf_read(self.inner, self.header.inner, record.inner) } {
[INFO] [stdout]     |                                ^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_unpack` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:118:29
[INFO] [stdout]     |
[INFO] [stdout] 118 |                     htslib::bcf_unpack(record.inner_mut(), htslib::BCF_UN_ALL as i32);
[INFO] [stdout]     |                             ^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_close` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:149:21
[INFO] [stdout]     |
[INFO] [stdout] 149 |             htslib::hts_close(self.inner);
[INFO] [stdout]     |                     ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]    ::: /opt/rustwide/target/debug/build/rust-htslib-665c79aeadc8b75b/out/bindings.rs:85:27989
[INFO] [stdout]     |
[INFO] [stdout]  85 | ... { pub fn hts_log ( severity : htsLogLevel , context : * const :: std :: os :: raw :: c_char , format : * const :: std :: os :: raw :: c_char , ... ) ; } ...
[INFO] [stdout]     |       ---------------------------------------------------------------------------------------------------------------------------------------------------- similarly named function `hts_log` defined here
[INFO] [stdout]     |
[INFO] [stdout] help: a function with a similar name exists
[INFO] [stdout]     |
[INFO] [stdout] 149 -             htslib::hts_close(self.inner);
[INFO] [stdout] 149 +             htslib::hts_log(self.inner);
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bcf_srs_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:158:25
[INFO] [stdout]     |
[INFO] [stdout] 158 |     inner: *mut htslib::bcf_srs_t,
[INFO] [stdout]     |                         ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_sr_init` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:195:43
[INFO] [stdout]     |
[INFO] [stdout] 195 |         let ser_reader = unsafe { htslib::bcf_sr_init() };
[INFO] [stdout]     |                                           ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_sr_set_opt` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:197:21
[INFO] [stdout]     |
[INFO] [stdout] 197 |             htslib::bcf_sr_set_opt(ser_reader, 0);
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_sr_add_reader` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:200:29
[INFO] [stdout]     |
[INFO] [stdout] 200 |         if unsafe { htslib::bcf_sr_add_reader(ser_reader, path.as_ptr()) } >= 0 {
[INFO] [stdout]     |                             ^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_dup` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:202:25
[INFO] [stdout]     |
[INFO] [stdout] 202 |                 htslib::bcf_hdr_dup((*(*ser_reader).readers.offset(0)).header)
[INFO] [stdout]     |                         ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_sr_seek` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:226:29
[INFO] [stdout]     |
[INFO] [stdout] 226 |         if unsafe { htslib::bcf_sr_seek(self.inner, contig, start as i32) } != 0 {
[INFO] [stdout]     |                             ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_sr_next_line` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:237:32
[INFO] [stdout]     |
[INFO] [stdout] 237 |         match unsafe { htslib::bcf_sr_next_line(self.inner) } {
[INFO] [stdout]     |                                ^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_copy` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:252:29
[INFO] [stdout]     |
[INFO] [stdout] 252 |                     htslib::bcf_copy(
[INFO] [stdout]     |                             ^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_sr_set_threads` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:284:34
[INFO] [stdout]     |
[INFO] [stdout] 284 |         let r = unsafe { htslib::bcf_sr_set_threads(self.inner, n_threads as i32) };
[INFO] [stdout]     |                                  ^^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_sr_destroy` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:303:26
[INFO] [stdout]     |
[INFO] [stdout] 303 |         unsafe { htslib::bcf_sr_destroy(self.inner) };
[INFO] [stdout]     |                          ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `bcf_srs_t` in module `::htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:338:31
[INFO] [stdout]     |
[INFO] [stdout] 338 |         inner: *mut ::htslib::bcf_srs_t,
[INFO] [stdout]     |                               ^^^^^^^^^ not found in `::htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_sr_init` in module `::htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:351:44
[INFO] [stdout]     |
[INFO] [stdout] 351 |             let inner = unsafe { ::htslib::bcf_sr_init() };
[INFO] [stdout]     |                                            ^^^^^^^^^^^ not found in `::htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_sr_set_opt` in module `::htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:374:27
[INFO] [stdout]     |
[INFO] [stdout] 374 |                 ::htslib::bcf_sr_set_opt(self.inner, 1, bitmask);
[INFO] [stdout]     |                           ^^^^^^^^^^^^^^ not found in `::htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_sr_add_reader` in module `::htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:384:44
[INFO] [stdout]     |
[INFO] [stdout] 384 |                         unsafe { ::htslib::bcf_sr_add_reader(self.inner, p_cstring.as_ptr()) };
[INFO] [stdout]     |                                            ^^^^^^^^^^^^^^^^^ not found in `::htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_dup` in module `::htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:388:39
[INFO] [stdout]     |
[INFO] [stdout] 388 | ...                   ::htslib::bcf_hdr_dup((*(*self.inner).readers.offset(i)).header)
[INFO] [stdout]     |                                 ^^^^^^^^^^^ not found in `::htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_sr_remove_reader` in module `::htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:406:31
[INFO] [stdout]     |
[INFO] [stdout] 406 |                     ::htslib::bcf_sr_remove_reader(self.inner, idx as i32);
[INFO] [stdout]     |                               ^^^^^^^^^^^^^^^^^^^^ not found in `::htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_sr_next_line` in module `::htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:419:42
[INFO] [stdout]     |
[INFO] [stdout] 419 |             let num = unsafe { ::htslib::bcf_sr_next_line(self.inner) as u32 };
[INFO] [stdout]     |                                          ^^^^^^^^^^^^^^^^ not found in `::htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_copy` in module `::htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:465:31
[INFO] [stdout]     |
[INFO] [stdout] 465 |                     ::htslib::bcf_copy(
[INFO] [stdout]     |                               ^^^^^^^^ not found in `::htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_sr_seek` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:502:33
[INFO] [stdout]     |
[INFO] [stdout] 502 |             if unsafe { htslib::bcf_sr_seek(self.inner, contig, start as i32) } != 0 {
[INFO] [stdout]     |                                 ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_sr_destroy` in module `::htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:513:32
[INFO] [stdout]     |
[INFO] [stdout] 513 |             unsafe { ::htslib::bcf_sr_destroy(self.inner) };
[INFO] [stdout]     |                                ^^^^^^^^^^^^^^ not found in `::htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `htsFile` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:522:25
[INFO] [stdout]     |
[INFO] [stdout] 522 |     inner: *mut htslib::htsFile,
[INFO] [stdout]     |                         ^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_write` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:588:26
[INFO] [stdout]     |
[INFO] [stdout] 588 |         unsafe { htslib::bcf_hdr_write(htsfile, header.inner) };
[INFO] [stdout]     |                          ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_dup` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:592:25
[INFO] [stdout]     |
[INFO] [stdout] 592 |                 htslib::bcf_hdr_dup(header.inner)
[INFO] [stdout]     |                         ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_translate` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:617:21
[INFO] [stdout]     |
[INFO] [stdout] 617 |             htslib::bcf_translate(self.header.inner, record.header().inner, record.inner);
[INFO] [stdout]     |                     ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_subset` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:630:25
[INFO] [stdout]     |
[INFO] [stdout] 630 |                 htslib::bcf_subset(
[INFO] [stdout]     |                         ^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_write` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:647:29
[INFO] [stdout]     |
[INFO] [stdout] 647 |         if unsafe { htslib::bcf_write(self.inner, self.header.inner, record.inner) } == -1 {
[INFO] [stdout]     |                             ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_close` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:668:21
[INFO] [stdout]     |
[INFO] [stdout] 668 |             htslib::hts_close(self.inner);
[INFO] [stdout]     |                     ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]    ::: /opt/rustwide/target/debug/build/rust-htslib-665c79aeadc8b75b/out/bindings.rs:85:27989
[INFO] [stdout]     |
[INFO] [stdout]  85 | ... { pub fn hts_log ( severity : htsLogLevel , context : * const :: std :: os :: raw :: c_char , format : * const :: std :: os :: raw :: c_char , ... ) ; } ...
[INFO] [stdout]     |       ---------------------------------------------------------------------------------------------------------------------------------------------------- similarly named function `hts_log` defined here
[INFO] [stdout]     |
[INFO] [stdout] help: a function with a similar name exists
[INFO] [stdout]     |
[INFO] [stdout] 668 -             htslib::hts_close(self.inner);
[INFO] [stdout] 668 +             htslib::hts_log(self.inner);
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `htsFile` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:731:62
[INFO] [stdout]     |
[INFO] [stdout] 731 | fn bcf_open(path: &[u8], mode: &[u8]) -> Result<*mut htslib::htsFile, BCFError> {
[INFO] [stdout]     |                                                              ^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_open` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/bcf/mod.rs:733:32
[INFO] [stdout]     |
[INFO] [stdout] 733 |     let ret = unsafe { htslib::hts_open(p.as_ptr(), ffi::CString::new(mode).unwrap().as_ptr()) };
[INFO] [stdout]     |                                ^^^^^^^^ not found in `htslib`
[INFO] [stdout]     |
[INFO] [stdout] note: function `sam::hts_open` exists but is inaccessible
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/sam/mod.rs:25:1
[INFO] [stdout]     |
[INFO] [stdout]  25 | fn hts_open(path: &ffi::CStr, mode: &[u8]) -> Result<*mut htslib::htsFile, WriterError> {
[INFO] [stdout]     | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ not accessible
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `htsFile` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/sam/mod.rs:20:21
[INFO] [stdout]    |
[INFO] [stdout] 20 |     f: *mut htslib::htsFile,
[INFO] [stdout]    |                     ^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `htsFile` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/sam/mod.rs:25:67
[INFO] [stdout]    |
[INFO] [stdout] 25 | fn hts_open(path: &ffi::CStr, mode: &[u8]) -> Result<*mut htslib::htsFile, WriterError> {
[INFO] [stdout]    |                                                                   ^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_open` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/sam/mod.rs:26:32
[INFO] [stdout]    |
[INFO] [stdout] 26 |     let ret = unsafe { htslib::hts_open(path.as_ptr(), ffi::CString::new(mode).unwrap().as_ptr()) };
[INFO] [stdout]    |                                ^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `sam_hdr_write` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/sam/mod.rs:66:21
[INFO] [stdout]    |
[INFO] [stdout] 66 |             htslib::sam_hdr_write(f, &header_view.inner());
[INFO] [stdout]    |                     ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `sam_write1` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/sam/mod.rs:80:29
[INFO] [stdout]    |
[INFO] [stdout] 80 |         if unsafe { htslib::sam_write1(self.f, &self.header.inner(), record.inner) } == -1 {
[INFO] [stdout]    |                             ^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_close` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/sam/mod.rs:91:21
[INFO] [stdout]    |
[INFO] [stdout] 91 |             htslib::hts_close(self.f);
[INFO] [stdout]    |                     ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]   ::: /opt/rustwide/target/debug/build/rust-htslib-665c79aeadc8b75b/out/bindings.rs:85:27989
[INFO] [stdout]    |
[INFO] [stdout] 85 | ... { pub fn hts_log ( severity : htsLogLevel , context : * const :: std :: os :: raw :: c_char , format : * const :: std :: os :: raw :: c_char , ... ) ; } ...
[INFO] [stdout]    |       ---------------------------------------------------------------------------------------------------------------------------------------------------- similarly named function `hts_log` defined here
[INFO] [stdout]    |
[INFO] [stdout] help: a function with a similar name exists
[INFO] [stdout]    |
[INFO] [stdout] 91 -             htslib::hts_close(self.f);
[INFO] [stdout] 91 +             htslib::hts_log(self.f);
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `htsFile` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/tbx/mod.rs:89:28
[INFO] [stdout]    |
[INFO] [stdout] 89 |     hts_file: *mut htslib::htsFile,
[INFO] [stdout]    |                            ^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `tbx_t` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/tbx/mod.rs:93:23
[INFO] [stdout]    |
[INFO] [stdout] 93 |     tbx: *mut htslib::tbx_t,
[INFO] [stdout]    |                       ^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `hts_itr_t` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/tbx/mod.rs:97:30
[INFO] [stdout]    |
[INFO] [stdout] 97 |     itr: Option<*mut htslib::hts_itr_t>,
[INFO] [stdout]    |                              ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_open` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/tbx/mod.rs:138:30
[INFO] [stdout]     |
[INFO] [stdout] 138 |             unsafe { htslib::hts_open(path.as_ptr(), ffi::CString::new("r").unwrap().as_ptr()) };
[INFO] [stdout]     |                              ^^^^^^^^ not found in `htslib`
[INFO] [stdout]     |
[INFO] [stdout] note: function `sam::hts_open` exists but is inaccessible
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/sam/mod.rs:25:1
[INFO] [stdout]     |
[INFO] [stdout]  25 | fn hts_open(path: &ffi::CStr, mode: &[u8]) -> Result<*mut htslib::htsFile, WriterError> {
[INFO] [stdout]     | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ not accessible
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_get_format` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/tbx/mod.rs:139:45
[INFO] [stdout]     |
[INFO] [stdout] 139 |         let hts_format = unsafe { (*htslib::hts_get_format(hts_file)).format };
[INFO] [stdout]     |                                             ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `tbx_index_load` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/tbx/mod.rs:140:36
[INFO] [stdout]     |
[INFO] [stdout] 140 |         let tbx = unsafe { htslib::tbx_index_load(path.as_ptr()) };
[INFO] [stdout]     |                                    ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_getline` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/tbx/mod.rs:148:27
[INFO] [stdout]     |
[INFO] [stdout] 148 |             while htslib::hts_getline(hts_file, KS_SEP_LINE, &mut buf) >= 0 {
[INFO] [stdout]     |                           ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `tbx_name2id` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/tbx/mod.rs:178:21
[INFO] [stdout]     |
[INFO] [stdout] 178 |             htslib::tbx_name2id(
[INFO] [stdout]     |                     ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_itr_destroy` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/tbx/mod.rs:198:25
[INFO] [stdout]     |
[INFO] [stdout] 198 |                 htslib::hts_itr_destroy(itr);
[INFO] [stdout]     |                         ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_itr_query` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/tbx/mod.rs:202:21
[INFO] [stdout]     |
[INFO] [stdout] 202 |             htslib::hts_itr_query(
[INFO] [stdout]     |                     ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `tbx_readrec` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/tbx/mod.rs:207:30
[INFO] [stdout]     |
[INFO] [stdout] 207 |                 Some(htslib::tbx_readrec),
[INFO] [stdout]     |                              ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `tbx_seqnames` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/tbx/mod.rs:224:37
[INFO] [stdout]     |
[INFO] [stdout] 224 |         let seqs = unsafe { htslib::tbx_seqnames(self.tbx, &mut nseq) };
[INFO] [stdout]     |                                     ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_set_threads` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/tbx/mod.rs:250:34
[INFO] [stdout]     |
[INFO] [stdout] 250 |         let r = unsafe { htslib::hts_set_threads(self.hts_file, n_threads as i32) };
[INFO] [stdout]     |                                  ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_itr_next` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/tbx/mod.rs:271:33
[INFO] [stdout]     |
[INFO] [stdout] 271 |                         htslib::hts_itr_next(
[INFO] [stdout]     |                                 ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_get_bgzfp` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/tbx/mod.rs:272:37
[INFO] [stdout]     |
[INFO] [stdout] 272 | ...                   htslib::hts_get_bgzfp(self.hts_file),
[INFO] [stdout]     |                               ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_itr_destroy` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/tbx/mod.rs:314:25
[INFO] [stdout]     |
[INFO] [stdout] 314 |                 htslib::hts_itr_destroy(self.itr.unwrap());
[INFO] [stdout]     |                         ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `tbx_destroy` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/tbx/mod.rs:316:21
[INFO] [stdout]     |
[INFO] [stdout] 316 |             htslib::tbx_destroy(self.tbx);
[INFO] [stdout]     |                     ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_close` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/git/checkouts/rust-htslib-89c31bec6a36f1bb/1f9736e/src/tbx/mod.rs:317:21
[INFO] [stdout]     |
[INFO] [stdout] 317 |             htslib::hts_close(self.hts_file);
[INFO] [stdout]     |                     ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]    ::: /opt/rustwide/target/debug/build/rust-htslib-665c79aeadc8b75b/out/bindings.rs:85:27989
[INFO] [stdout]     |
[INFO] [stdout]  85 | ... { pub fn hts_log ( severity : htsLogLevel , context : * const :: std :: os :: raw :: c_char , format : * const :: std :: os :: raw :: c_char , ... ) ; } ...
[INFO] [stdout]     |       ---------------------------------------------------------------------------------------------------------------------------------------------------- similarly named function `hts_log` defined here
[INFO] [stdout]     |
[INFO] [stdout] help: a function with a similar name exists
[INFO] [stdout]     |
[INFO] [stdout] 317 -             htslib::hts_close(self.hts_file);
[INFO] [stdout] 317 +             htslib::hts_log(self.hts_file);
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0425`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `rust-htslib` (lib) due to 187 previous errors
[INFO] running `Command { std: "docker" "inspect" "d9dc6b37b9439d3a52fa5e5a471c8bc554e164528db9af3771dc6ac55366cfb7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d9dc6b37b9439d3a52fa5e5a471c8bc554e164528db9af3771dc6ac55366cfb7", kill_on_drop: false }`
[INFO] [stdout] d9dc6b37b9439d3a52fa5e5a471c8bc554e164528db9af3771dc6ac55366cfb7
