[INFO] cloning repository https://github.com/JoseBlanca/vcf_parser_rs [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/JoseBlanca/vcf_parser_rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FJoseBlanca%2Fvcf_parser_rs", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FJoseBlanca%2Fvcf_parser_rs'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 1fcfc19135dc128abd2350af66a086f4fce5d4f6 [INFO] checking JoseBlanca/vcf_parser_rs against master#fd0c901b00ee1e08a250039cdb90258603497e20 for pr-153692 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FJoseBlanca%2Fvcf_parser_rs" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/JoseBlanca/vcf_parser_rs [INFO] finished tweaking git repo https://github.com/JoseBlanca/vcf_parser_rs [INFO] tweaked toml for git repo https://github.com/JoseBlanca/vcf_parser_rs written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/JoseBlanca/vcf_parser_rs on toolchain fd0c901b00ee1e08a250039cdb90258603497e20 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+fd0c901b00ee1e08a250039cdb90258603497e20" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/JoseBlanca/vcf_parser_rs already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+fd0c901b00ee1e08a250039cdb90258603497e20" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded unicode-ident v1.0.18 [INFO] [stderr] Downloaded custom_derive v0.1.7 [INFO] [stderr] Downloaded thiserror-impl v2.0.12 [INFO] [stderr] Downloaded thiserror v2.0.12 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded windows-targets v0.53.0 [INFO] [stderr] Downloaded unindent v0.2.4 [INFO] [stderr] Downloaded derive-new v0.6.0 [INFO] [stderr] Downloaded strum_macros v0.26.4 [INFO] [stderr] Downloaded pyo3-macros v0.25.1 [INFO] [stderr] Downloaded libz-rs-sys v0.5.1 [INFO] [stderr] Downloaded flate2 v1.1.1 [INFO] [stderr] Downloaded pyo3-ffi v0.25.1 [INFO] [stderr] Downloaded miniz_oxide v0.8.8 [INFO] [stderr] Downloaded cc v1.2.23 [INFO] [stderr] Downloaded zlib-rs v0.5.1 [INFO] [stderr] Downloaded portable-atomic v1.11.1 [INFO] [stderr] Downloaded icu_properties_data v2.0.1 [INFO] [stderr] Downloaded wasi v0.14.2+wasi-0.2.4 [INFO] [stderr] Downloaded syn v2.0.101 [INFO] [stderr] Downloaded zerovec v0.11.2 [INFO] [stderr] Downloaded pyo3-macros-backend v0.25.1 [INFO] [stderr] Downloaded openssl-sys v0.9.108 [INFO] [stderr] Downloaded icu_collections v2.0.0 [INFO] [stderr] Downloaded r-efi v5.2.0 [INFO] [stderr] Downloaded icu_normalizer_data v2.0.0 [INFO] [stderr] Downloaded icu_locale_core v2.0.0 [INFO] [stderr] Downloaded zerotrie v0.2.2 [INFO] [stderr] Downloaded serde v1.0.219 [INFO] [stderr] Downloaded target-lexicon v0.13.2 [INFO] [stderr] Downloaded getrandom v0.3.3 [INFO] [stderr] Downloaded icu_normalizer v2.0.0 [INFO] [stderr] Downloaded rust-htslib v0.49.0 [INFO] [stderr] Downloaded indoc v2.0.6 [INFO] [stderr] Downloaded pyo3-build-config v0.25.1 [INFO] [stderr] Downloaded bitflags v2.9.1 [INFO] [stderr] Downloaded linear-map v1.2.0 [INFO] [stderr] Downloaded bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Downloaded litemap v0.8.0 [INFO] [stderr] Downloaded regex-automata v0.4.9 [INFO] [stderr] Downloaded rustversion v1.0.21 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded derive-new v0.7.0 [INFO] [stderr] Downloaded libloading v0.8.7 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded wit-bindgen-rt v0.39.0 [INFO] [stderr] Downloaded serde_derive v1.0.219 [INFO] [stderr] Downloaded lzma-sys v0.1.20 [INFO] [stderr] Downloaded windows_x86_64_gnullvm v0.53.0 [INFO] [stderr] Downloaded windows_aarch64_msvc v0.53.0 [INFO] [stderr] Downloaded libc v0.2.172 [INFO] [stderr] Downloaded libz-sys v1.1.22 [INFO] [stderr] Downloaded quick-error v1.2.3 [INFO] [stderr] Downloaded windows_i686_gnullvm v0.53.0 [INFO] [stderr] Downloaded windows_x86_64_msvc v0.53.0 [INFO] [stderr] Downloaded glob v0.3.2 [INFO] [stderr] Downloaded windows_x86_64_gnu v0.53.0 [INFO] [stderr] Downloaded windows_aarch64_gnullvm v0.53.0 [INFO] [stderr] Downloaded windows_i686_gnu v0.53.0 [INFO] [stderr] Downloaded windows_i686_msvc v0.53.0 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded icu_provider v2.0.0 [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded jobserver v0.1.33 [INFO] [stderr] Downloaded writeable v0.6.1 [INFO] [stderr] Downloaded yoke v0.8.0 [INFO] [stderr] Downloaded icu_properties v2.0.1 [INFO] [stderr] Downloaded yoke-derive v0.8.0 [INFO] [stderr] Downloaded pyo3 v0.25.1 [INFO] [stderr] Downloaded zerovec-derive v0.11.1 [INFO] [stderr] Downloaded smallvec v1.15.0 [INFO] [stderr] Downloaded proc-macro2 v1.0.95 [INFO] [stderr] Downloaded quote v1.0.40 [INFO] [stderr] Downloaded tinystr v0.8.1 [INFO] [stderr] Downloaded potential_utf v0.1.2 [INFO] [stderr] Downloaded curl-sys v0.4.80+curl-8.12.1 [INFO] [stderr] Downloaded hts-sys v2.2.0 [INFO] [stderr] Downloaded openssl-src v300.5.0+3.5.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+fd0c901b00ee1e08a250039cdb90258603497e20" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 52510024d07edeab74a0fe596cd7547ec5f87568f5f912d5b264c7b67297816a [INFO] running `Command { std: "docker" "start" "-a" "52510024d07edeab74a0fe596cd7547ec5f87568f5f912d5b264c7b67297816a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "52510024d07edeab74a0fe596cd7547ec5f87568f5f912d5b264c7b67297816a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "52510024d07edeab74a0fe596cd7547ec5f87568f5f912d5b264c7b67297816a", kill_on_drop: false }` [INFO] [stdout] 52510024d07edeab74a0fe596cd7547ec5f87568f5f912d5b264c7b67297816a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+fd0c901b00ee1e08a250039cdb90258603497e20" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 6a4a4c8ac8b093306034e94e39b35703e39c46d93a8af7d7fd62d87ab9d6502a [INFO] running `Command { std: "docker" "start" "-a" "6a4a4c8ac8b093306034e94e39b35703e39c46d93a8af7d7fd62d87ab9d6502a", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.95 [INFO] [stderr] Compiling unicode-ident v1.0.18 [INFO] [stderr] Compiling libc v0.2.172 [INFO] [stderr] Compiling pkg-config v0.3.32 [INFO] [stderr] Compiling target-lexicon v0.13.2 [INFO] [stderr] Checking stable_deref_trait v1.2.0 [INFO] [stderr] Compiling once_cell v1.21.3 [INFO] [stderr] Compiling glob v0.3.2 [INFO] [stderr] Checking litemap v0.8.0 [INFO] [stderr] Checking writeable v0.6.1 [INFO] [stderr] Compiling icu_properties_data v2.0.1 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling icu_normalizer_data v2.0.0 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling libloading v0.8.7 [INFO] [stderr] Compiling bindgen v0.69.5 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling bitflags v2.9.1 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking smallvec v1.15.0 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling rustversion v1.0.21 [INFO] [stderr] Compiling lazy_static v1.5.0 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling autocfg v1.5.0 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Checking percent-encoding v2.3.1 [INFO] [stderr] Checking utf8_iter v1.0.4 [INFO] [stderr] Checking zlib-rs v0.5.1 [INFO] [stderr] Checking form_urlencoded v1.2.1 [INFO] [stderr] Compiling memoffset v0.9.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking crc32fast v1.4.2 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Compiling syn v2.0.101 [INFO] [stderr] Compiling jobserver v0.1.33 [INFO] [stderr] Compiling indoc v2.0.6 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking unindent v0.2.4 [INFO] [stderr] Compiling pyo3-build-config v0.25.1 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Compiling cc v1.2.23 [INFO] [stderr] Checking libz-rs-sys v0.5.1 [INFO] [stderr] Checking flate2 v1.1.1 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling cmake v0.1.54 [INFO] [stderr] Compiling openssl-src v300.5.0+3.5.0 [INFO] [stderr] Compiling openssl-sys v0.9.108 [INFO] [stderr] Compiling curl-sys v0.4.80+curl-8.12.1 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling libz-sys v1.1.22 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling pyo3-macros-backend v0.25.1 [INFO] [stderr] Compiling pyo3-ffi v0.25.1 [INFO] [stderr] Compiling pyo3 v0.25.1 [INFO] [stderr] Compiling synstructure v0.13.2 [INFO] [stderr] Compiling zerovec-derive v0.11.1 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling derive-new v0.7.0 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] Compiling yoke-derive v0.8.0 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking zerofrom v0.1.6 [INFO] [stderr] Checking yoke v0.8.0 [INFO] [stderr] Checking zerovec v0.11.2 [INFO] [stderr] Checking zerotrie v0.2.2 [INFO] [stderr] Checking tinystr v0.8.1 [INFO] [stderr] Checking potential_utf v0.1.2 [INFO] [stderr] Checking icu_locale_core v2.0.0 [INFO] [stderr] Checking icu_collections v2.0.0 [INFO] [stderr] Checking icu_provider v2.0.0 [INFO] [stderr] Compiling pyo3-macros v0.25.1 [INFO] [stderr] Checking icu_normalizer v2.0.0 [INFO] [stderr] Checking icu_properties v2.0.1 [INFO] [stderr] Checking idna_adapter v1.2.1 [INFO] [stderr] Checking idna v1.0.3 [INFO] [stderr] Compiling hts-sys v2.2.0 [INFO] [stderr] Checking url v2.5.4 [INFO] [stderr] Checking rust-htslib v0.49.0 [INFO] [stderr] Checking vcfparser v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused variable: `path` [INFO] [stdout] --> tests/region_split_test.rs:139:9 [INFO] [stdout] | [INFO] [stdout] 139 | let path = "sample_files/sample.g.vcf.gz"; [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_path` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 53s [INFO] running `Command { std: "docker" "inspect" "6a4a4c8ac8b093306034e94e39b35703e39c46d93a8af7d7fd62d87ab9d6502a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6a4a4c8ac8b093306034e94e39b35703e39c46d93a8af7d7fd62d87ab9d6502a", kill_on_drop: false }` [INFO] [stdout] 6a4a4c8ac8b093306034e94e39b35703e39c46d93a8af7d7fd62d87ab9d6502a