[INFO] cloning repository https://github.com/ssVyz/oligoscreen_pairwise
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ssVyz/oligoscreen_pairwise" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FssVyz%2Foligoscreen_pairwise", kill_on_drop: false }`
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[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] cb1bc60567959353990b7a4a02767417b001e0f6
[INFO] checking ssVyz/oligoscreen_pairwise against try#3248bace201b6227b0ff78eacc8b00d805551a86 for pr-153513
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FssVyz%2Foligoscreen_pairwise" "/workspace/builds/worker-0-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/ssVyz/oligoscreen_pairwise
[INFO] finished tweaking git repo https://github.com/ssVyz/oligoscreen_pairwise
[INFO] tweaked toml for git repo https://github.com/ssVyz/oligoscreen_pairwise written to /workspace/builds/worker-0-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/ssVyz/oligoscreen_pairwise on toolchain 3248bace201b6227b0ff78eacc8b00d805551a86
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3248bace201b6227b0ff78eacc8b00d805551a86" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/ssVyz/oligoscreen_pairwise already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3248bace201b6227b0ff78eacc8b00d805551a86" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] [stdout] warning: function `create_consensus_from_seqs` is never used
[INFO] [stdout]    --> src/analysis/analyzer.rs:402:4
[INFO] [stdout]     |
[INFO] [stdout] 402 | fn create_consensus_from_seqs(sequences: &[&str], exclude_n: bool) -> (String, usize, bool) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_consensus_from_seqs` is never used
[INFO] [stdout]    --> src/analysis/analyzer.rs:402:4
[INFO] [stdout]     |
[INFO] [stdout] 402 | fn create_consensus_from_seqs(sequences: &[&str], exclude_n: bool) -> (String, usize, bool) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `analyzer::*`
[INFO] [stdout]   --> src/analysis/mod.rs:16:9
[INFO] [stdout]    |
[INFO] [stdout] 16 | pub use analyzer::*;
[INFO] [stdout]    |         ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `pairwise::*`
[INFO] [stdout]   --> src/analysis/mod.rs:17:9
[INFO] [stdout]    |
[INFO] [stdout] 17 | pub use pairwise::*;
[INFO] [stdout]    |         ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `analyzer::*`
[INFO] [stdout]   --> src/analysis/mod.rs:16:9
[INFO] [stdout]    |
[INFO] [stdout] 16 | pub use analyzer::*;
[INFO] [stdout]    |         ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `pairwise::*`
[INFO] [stdout]   --> src/analysis/mod.rs:17:9
[INFO] [stdout]    |
[INFO] [stdout] 17 | pub use pairwise::*;
[INFO] [stdout]    |         ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `description` is never used
[INFO] [stdout]   --> src/analysis/types.rs:25:12
[INFO] [stdout]    |
[INFO] [stdout] 24 | impl AnalysisMethod {
[INFO] [stdout]    | ------------------- method in this implementation
[INFO] [stdout] 25 |     pub fn description(&self) -> String {
[INFO] [stdout]    |            ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `current_length`, `current_position`, `total_positions`, `lengths_completed`, and `total_lengths` are never read
[INFO] [stdout]    --> src/analysis/types.rs:192:9
[INFO] [stdout]     |
[INFO] [stdout] 191 | pub struct ProgressUpdate {
[INFO] [stdout]     |            -------------- fields in this struct
[INFO] [stdout] 192 |     pub current_length: u32,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^
[INFO] [stdout] 193 |     pub current_position: usize,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^
[INFO] [stdout] 194 |     pub total_positions: usize,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^
[INFO] [stdout] 195 |     pub lengths_completed: u32,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 196 |     pub total_lengths: u32,
[INFO] [stdout]     |         ^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `ProgressUpdate` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `STANDARD_BASES` is never used
[INFO] [stdout]  --> src/analysis/iupac.rs:7:11
[INFO] [stdout]   |
[INFO] [stdout] 7 | pub const STANDARD_BASES: [char; 4] = ['A', 'C', 'G', 'T'];
[INFO] [stdout]   |           ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `AMBIGUOUS_BASES` is never used
[INFO] [stdout]   --> src/analysis/iupac.rs:10:11
[INFO] [stdout]    |
[INFO] [stdout] 10 | pub const AMBIGUOUS_BASES: [char; 11] = ['R', 'Y', 'S', 'W', 'K', 'M', 'B', 'D', 'H', 'V', 'N'];
[INFO] [stdout]    |           ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `GAP_CHARS` is never used
[INFO] [stdout]   --> src/analysis/iupac.rs:13:11
[INFO] [stdout]    |
[INFO] [stdout] 13 | pub const GAP_CHARS: [char; 2] = ['-', '.'];
[INFO] [stdout]    |           ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: static `IUPAC_TO_BASES` is never used
[INFO] [stdout]   --> src/analysis/iupac.rs:16:12
[INFO] [stdout]    |
[INFO] [stdout] 16 | pub static IUPAC_TO_BASES: Lazy<HashMap<char, HashSet<char>>> = Lazy::new(|| {
[INFO] [stdout]    |            ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: static `BASES_TO_IUPAC` is never used
[INFO] [stdout]   --> src/analysis/iupac.rs:37:12
[INFO] [stdout]    |
[INFO] [stdout] 37 | pub static BASES_TO_IUPAC: Lazy<HashMap<Vec<char>, char>> = Lazy::new(|| {
[INFO] [stdout]    |            ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `is_valid_dna` is never used
[INFO] [stdout]   --> src/analysis/iupac.rs:94:8
[INFO] [stdout]    |
[INFO] [stdout] 94 | pub fn is_valid_dna(c: char) -> bool {
[INFO] [stdout]    |        ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `bases_to_iupac` is never used
[INFO] [stdout]   --> src/analysis/iupac.rs:99:8
[INFO] [stdout]    |
[INFO] [stdout] 99 | pub fn bases_to_iupac(bases: &HashSet<char>) -> char {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `iupac_to_bases` is never used
[INFO] [stdout]    --> src/analysis/iupac.rs:106:8
[INFO] [stdout]     |
[INFO] [stdout] 106 | pub fn iupac_to_bases(code: char) -> Option<&'static HashSet<char>> {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `sequence_matches_consensus` is never used
[INFO] [stdout]    --> src/analysis/iupac.rs:111:8
[INFO] [stdout]     |
[INFO] [stdout] 111 | pub fn sequence_matches_consensus(seq: &str, consensus: &str) -> bool {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_consensus` is never used
[INFO] [stdout]    --> src/analysis/iupac.rs:131:8
[INFO] [stdout]     |
[INFO] [stdout] 131 | pub fn create_consensus(sequences: &[&str], exclude_n: bool) -> (String, usize, bool) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `count_ambiguities` is never used
[INFO] [stdout]    --> src/analysis/iupac.rs:172:8
[INFO] [stdout]     |
[INFO] [stdout] 172 | pub fn count_ambiguities(seq: &str) -> usize {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `is_empty` is never used
[INFO] [stdout]   --> src/analysis/fasta.rs:27:12
[INFO] [stdout]    |
[INFO] [stdout] 19 | impl ReferenceData {
[INFO] [stdout]    | ------------------ method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 27 |     pub fn is_empty(&self) -> bool {
[INFO] [stdout]    |            ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_consensus_from_seqs` is never used
[INFO] [stdout]    --> src/analysis/analyzer.rs:402:4
[INFO] [stdout]     |
[INFO] [stdout] 402 | fn create_consensus_from_seqs(sequences: &[&str], exclude_n: bool) -> (String, usize, bool) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `score` is never read
[INFO] [stdout]   --> src/analysis/pairwise.rs:36:9
[INFO] [stdout]    |
[INFO] [stdout] 32 | pub struct PairwiseMatch {
[INFO] [stdout]    |            ------------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 36 |     pub score: i32,
[INFO] [stdout]    |         ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `PairwiseMatch` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `align_oligo_to_reference` is never used
[INFO] [stdout]   --> src/analysis/pairwise.rs:90:8
[INFO] [stdout]    |
[INFO] [stdout] 90 | pub fn align_oligo_to_reference(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `collect_matches` is never used
[INFO] [stdout]    --> src/analysis/pairwise.rs:121:8
[INFO] [stdout]     |
[INFO] [stdout] 121 | pub fn collect_matches(
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `description` is never used
[INFO] [stdout]   --> src/analysis/types.rs:25:12
[INFO] [stdout]    |
[INFO] [stdout] 24 | impl AnalysisMethod {
[INFO] [stdout]    | ------------------- method in this implementation
[INFO] [stdout] 25 |     pub fn description(&self) -> String {
[INFO] [stdout]    |            ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `current_length`, `current_position`, `total_positions`, `lengths_completed`, and `total_lengths` are never read
[INFO] [stdout]    --> src/analysis/types.rs:192:9
[INFO] [stdout]     |
[INFO] [stdout] 191 | pub struct ProgressUpdate {
[INFO] [stdout]     |            -------------- fields in this struct
[INFO] [stdout] 192 |     pub current_length: u32,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^
[INFO] [stdout] 193 |     pub current_position: usize,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^
[INFO] [stdout] 194 |     pub total_positions: usize,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^
[INFO] [stdout] 195 |     pub lengths_completed: u32,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 196 |     pub total_lengths: u32,
[INFO] [stdout]     |         ^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `ProgressUpdate` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `STANDARD_BASES` is never used
[INFO] [stdout]  --> src/analysis/iupac.rs:7:11
[INFO] [stdout]   |
[INFO] [stdout] 7 | pub const STANDARD_BASES: [char; 4] = ['A', 'C', 'G', 'T'];
[INFO] [stdout]   |           ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `AMBIGUOUS_BASES` is never used
[INFO] [stdout]   --> src/analysis/iupac.rs:10:11
[INFO] [stdout]    |
[INFO] [stdout] 10 | pub const AMBIGUOUS_BASES: [char; 11] = ['R', 'Y', 'S', 'W', 'K', 'M', 'B', 'D', 'H', 'V', 'N'];
[INFO] [stdout]    |           ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `GAP_CHARS` is never used
[INFO] [stdout]   --> src/analysis/iupac.rs:13:11
[INFO] [stdout]    |
[INFO] [stdout] 13 | pub const GAP_CHARS: [char; 2] = ['-', '.'];
[INFO] [stdout]    |           ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: static `BASES_TO_IUPAC` is never used
[INFO] [stdout]   --> src/analysis/iupac.rs:37:12
[INFO] [stdout]    |
[INFO] [stdout] 37 | pub static BASES_TO_IUPAC: Lazy<HashMap<Vec<char>, char>> = Lazy::new(|| {
[INFO] [stdout]    |            ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `is_valid_dna` is never used
[INFO] [stdout]   --> src/analysis/iupac.rs:94:8
[INFO] [stdout]    |
[INFO] [stdout] 94 | pub fn is_valid_dna(c: char) -> bool {
[INFO] [stdout]    |        ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `bases_to_iupac` is never used
[INFO] [stdout]   --> src/analysis/iupac.rs:99:8
[INFO] [stdout]    |
[INFO] [stdout] 99 | pub fn bases_to_iupac(bases: &HashSet<char>) -> char {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `iupac_to_bases` is never used
[INFO] [stdout]    --> src/analysis/iupac.rs:106:8
[INFO] [stdout]     |
[INFO] [stdout] 106 | pub fn iupac_to_bases(code: char) -> Option<&'static HashSet<char>> {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_consensus` is never used
[INFO] [stdout]    --> src/analysis/iupac.rs:131:8
[INFO] [stdout]     |
[INFO] [stdout] 131 | pub fn create_consensus(sequences: &[&str], exclude_n: bool) -> (String, usize, bool) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `count_ambiguities` is never used
[INFO] [stdout]    --> src/analysis/iupac.rs:172:8
[INFO] [stdout]     |
[INFO] [stdout] 172 | pub fn count_ambiguities(seq: &str) -> usize {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `is_empty` is never used
[INFO] [stdout]   --> src/analysis/fasta.rs:27:12
[INFO] [stdout]    |
[INFO] [stdout] 19 | impl ReferenceData {
[INFO] [stdout]    | ------------------ method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 27 |     pub fn is_empty(&self) -> bool {
[INFO] [stdout]    |            ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_consensus_from_seqs` is never used
[INFO] [stdout]    --> src/analysis/analyzer.rs:402:4
[INFO] [stdout]     |
[INFO] [stdout] 402 | fn create_consensus_from_seqs(sequences: &[&str], exclude_n: bool) -> (String, usize, bool) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `score` is never read
[INFO] [stdout]   --> src/analysis/pairwise.rs:36:9
[INFO] [stdout]    |
[INFO] [stdout] 32 | pub struct PairwiseMatch {
[INFO] [stdout]    |            ------------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 36 |     pub score: i32,
[INFO] [stdout]    |         ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `PairwiseMatch` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 35s
[INFO] running `Command { std: "docker" "inspect" "2638200ee69cc182800104ea19b269610169574d90aa46f0f0a29f78fd902ef2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2638200ee69cc182800104ea19b269610169574d90aa46f0f0a29f78fd902ef2", kill_on_drop: false }`
[INFO] [stdout] 2638200ee69cc182800104ea19b269610169574d90aa46f0f0a29f78fd902ef2