[INFO] fetching crate kira-qc 0.1.1...
[INFO] checking kira-qc-0.1.1 against master#eeb94be79adc9df7a09ad0b2421f16e60e6d932c for pr-152971
[INFO] extracting crate kira-qc 0.1.1 into /workspace/builds/worker-3-tc1/source
[INFO] started tweaking crates.io crate kira-qc 0.1.1
[INFO] finished tweaking crates.io crate kira-qc 0.1.1
[INFO] tweaked toml for crates.io crate kira-qc 0.1.1 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate kira-qc 0.1.1 on toolchain eeb94be79adc9df7a09ad0b2421f16e60e6d932c
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+eeb94be79adc9df7a09ad0b2421f16e60e6d932c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate kira-qc 0.1.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+eeb94be79adc9df7a09ad0b2421f16e60e6d932c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded kira-fastq v0.1.0
[INFO] [stderr]   Downloaded clap v4.5.56
[INFO] [stderr]   Downloaded subsetter v0.2.3
[INFO] [stderr]   Downloaded miniz_oxide v0.9.0
[INFO] [stderr]   Downloaded kurbo v0.12.0
[INFO] [stderr]   Downloaded typed-path v0.12.2
[INFO] [stderr]   Downloaded svg2pdf v0.13.0
[INFO] [stderr]   Downloaded clap_builder v4.5.56
[INFO] [stderr]   Downloaded zip v7.2.0
[INFO] [stderr]   Downloaded write-fonts v0.43.0
[INFO] [stderr]   Downloaded pdf-writer v0.12.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:61361fe0aef631f17e9d025a70c5a647956f8c671dd02950a60ad3f5cc5526d7" "/opt/rustwide/cargo-home/bin/cargo" "+eeb94be79adc9df7a09ad0b2421f16e60e6d932c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 94badd11880e058f0e93248bd4438abe270a6de31fc9a98e6c9785ae94c42a71
[INFO] running `Command { std: "docker" "start" "-a" "94badd11880e058f0e93248bd4438abe270a6de31fc9a98e6c9785ae94c42a71", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "94badd11880e058f0e93248bd4438abe270a6de31fc9a98e6c9785ae94c42a71", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "94badd11880e058f0e93248bd4438abe270a6de31fc9a98e6c9785ae94c42a71", kill_on_drop: false }`
[INFO] [stdout] 94badd11880e058f0e93248bd4438abe270a6de31fc9a98e6c9785ae94c42a71
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:61361fe0aef631f17e9d025a70c5a647956f8c671dd02950a60ad3f5cc5526d7" "/opt/rustwide/cargo-home/bin/cargo" "+eeb94be79adc9df7a09ad0b2421f16e60e6d932c" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] a4dd35671e63a8644fb013b0bda45c181d8839f1b220ccd199dc798c5ddcdd65
[INFO] running `Command { std: "docker" "start" "-a" "a4dd35671e63a8644fb013b0bda45c181d8839f1b220ccd199dc798c5ddcdd65", kill_on_drop: false }`
[INFO] [stderr]     Checking zlib-rs v0.5.5
[INFO] [stderr]    Compiling bytemuck_derive v1.10.2
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]     Checking memmap2 v0.9.9
[INFO] [stderr]     Checking kurbo v0.11.3
[INFO] [stderr]     Checking pxfm v0.1.27
[INFO] [stderr]     Checking kurbo v0.12.0
[INFO] [stderr]     Checking imagesize v0.13.0
[INFO] [stderr]     Checking fontdb v0.23.0
[INFO] [stderr]     Checking zune-jpeg v0.4.21
[INFO] [stderr]     Checking gif v0.13.3
[INFO] [stderr]     Checking sha2 v0.10.9
[INFO] [stderr]     Checking svgtypes v0.15.3
[INFO] [stderr]     Checking flate2 v1.1.8
[INFO] [stderr]     Checking hmac v0.12.1
[INFO] [stderr]     Checking libbz2-rs-sys v0.2.2
[INFO] [stderr]     Checking time v0.3.46
[INFO] [stderr]    Compiling clap_derive v4.5.55
[INFO] [stderr]     Checking pdf-writer v0.12.1
[INFO] [stderr]     Checking bytemuck v1.25.0
[INFO] [stderr]     Checking font-types v0.10.1
[INFO] [stderr]     Checking tiny-skia-path v0.11.4
[INFO] [stderr]     Checking png v0.17.16
[INFO] [stderr]     Checking rustybuzz v0.20.1
[INFO] [stderr]     Checking read-fonts v0.35.0
[INFO] [stderr]     Checking png v0.18.0
[INFO] [stderr]     Checking tiny-skia v0.11.4
[INFO] [stderr]     Checking rgb v0.8.52
[INFO] [stderr]     Checking bzip2 v0.6.1
[INFO] [stderr]     Checking moxcms v0.7.11
[INFO] [stderr]     Checking clap_builder v4.5.56
[INFO] [stderr]     Checking zopfli v0.8.3
[INFO] [stderr]     Checking lzma-rust2 v0.15.7
[INFO] [stderr]     Checking zeroize v1.8.2
[INFO] [stderr]     Checking pbkdf2 v0.12.2
[INFO] [stderr]     Checking sha1 v0.10.6
[INFO] [stderr]     Checking miniz_oxide v0.9.0
[INFO] [stderr]     Checking usvg v0.45.1
[INFO] [stderr]     Checking ppmd-rust v1.4.0
[INFO] [stderr]     Checking typed-path v0.12.2
[INFO] [stderr]     Checking kira-fastq v0.1.0
[INFO] [stderr]     Checking clap v4.5.56
[INFO] [stderr]     Checking resvg v0.45.1
[INFO] [stderr]     Checking image v0.25.9
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]     Checking zstd v0.13.3
[INFO] [stderr]     Checking zip v7.2.0
[INFO] [stderr]     Checking write-fonts v0.43.0
[INFO] [stderr]     Checking skrifa v0.37.0
[INFO] [stderr]     Checking subsetter v0.2.3
[INFO] [stderr]     Checking svg2pdf v0.13.0
[INFO] [stderr]     Checking kira-qc v0.1.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: field `out_dir` is never read
[INFO] [stdout]   --> src/core/engine.rs:21:9
[INFO] [stdout]    |
[INFO] [stdout] 19 | pub struct RunConfig {
[INFO] [stdout]    |            --------- field in this struct
[INFO] [stdout] 20 |     pub reads1: PathBuf,
[INFO] [stdout] 21 |     pub out_dir: PathBuf,
[INFO] [stdout]    |         ^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `id` is never read
[INFO] [stdout]  --> src/core/fastq.rs:3:9
[INFO] [stdout]   |
[INFO] [stdout] 2 | pub struct ReadView<'a> {
[INFO] [stdout]   |            -------- field in this struct
[INFO] [stdout] 3 |     pub id: &'a [u8],
[INFO] [stdout]   |         ^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `ReadView` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `error` is never read
[INFO] [stdout]   --> src/core/metrics/duplication.rs:42:9
[INFO] [stdout]    |
[INFO] [stdout] 39 | pub struct Entry {
[INFO] [stdout]    |            ----- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 42 |     pub error: u64,
[INFO] [stdout]    |         ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Entry` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `encode_kmer` is never used
[INFO] [stdout]    --> src/core/metrics/kmer_content.rs:149:12
[INFO] [stdout]     |
[INFO] [stdout] 149 |     pub fn encode_kmer(seq: &[u8]) -> Option<u64> {
[INFO] [stdout]     |            ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `pos_bin` is never used
[INFO] [stdout]    --> src/core/metrics/kmer_content.rs:183:12
[INFO] [stdout]     |
[INFO] [stdout] 183 |     pub fn pos_bin(pos: usize, len: usize) -> usize {
[INFO] [stdout]     |            ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `error` is never read
[INFO] [stdout]   --> src/core/metrics/overrepresented.rs:20:9
[INFO] [stdout]    |
[INFO] [stdout] 17 | pub struct Entry {
[INFO] [stdout]    |            ----- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 20 |     pub error: u64,
[INFO] [stdout]    |         ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Entry` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `phred_offset` is never read
[INFO] [stdout]   --> src/core/model/mod.rs:39:9
[INFO] [stdout]    |
[INFO] [stdout] 38 | pub struct FinalizeContext {
[INFO] [stdout]    |            --------------- field in this struct
[INFO] [stdout] 39 |     pub phred_offset: u8,
[INFO] [stdout]    |         ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `write_modern` is never used
[INFO] [stdout]   --> src/report/html.rs:10:4
[INFO] [stdout]    |
[INFO] [stdout] 10 | fn write_modern(path: &Path, output: &RunOutput) -> Result<()> {
[INFO] [stdout]    |    ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `summary_row` is never used
[INFO] [stdout]    --> src/report/html.rs:476:4
[INFO] [stdout]     |
[INFO] [stdout] 476 | fn summary_row(out: &mut String, status: Status, name: &str) -> Result<()> {
[INFO] [stdout]     |    ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_header` is never used
[INFO] [stdout]    --> src/report/html.rs:488:4
[INFO] [stdout]     |
[INFO] [stdout] 488 | fn module_header(out: &mut String, status: Status, title: &str) -> Result<()> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_footer` is never used
[INFO] [stdout]    --> src/report/html.rs:500:4
[INFO] [stdout]     |
[INFO] [stdout] 500 | fn module_footer(out: &mut String) -> Result<()> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `status_class` is never used
[INFO] [stdout]    --> src/report/html.rs:505:4
[INFO] [stdout]     |
[INFO] [stdout] 505 | fn status_class(status: Status) -> &'static str {
[INFO] [stdout]     |    ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_basic_stats` is never used
[INFO] [stdout]     --> src/report/html.rs:1026:4
[INFO] [stdout]      |
[INFO] [stdout] 1026 | fn module_basic_stats(
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_per_base_quality` is never used
[INFO] [stdout]     --> src/report/html.rs:1081:4
[INFO] [stdout]      |
[INFO] [stdout] 1081 | fn module_per_base_quality(
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_per_seq_quality` is never used
[INFO] [stdout]     --> src/report/html.rs:1113:4
[INFO] [stdout]      |
[INFO] [stdout] 1113 | fn module_per_seq_quality(
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_per_base_content` is never used
[INFO] [stdout]     --> src/report/html.rs:1151:4
[INFO] [stdout]      |
[INFO] [stdout] 1151 | fn module_per_base_content(
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_per_seq_gc` is never used
[INFO] [stdout]     --> src/report/html.rs:1171:4
[INFO] [stdout]      |
[INFO] [stdout] 1171 | fn module_per_seq_gc(out: &mut String, metrics: &crate::core::metrics::FinalMetrics) -> Result<()> {
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_per_base_n` is never used
[INFO] [stdout]     --> src/report/html.rs:1198:4
[INFO] [stdout]      |
[INFO] [stdout] 1198 | fn module_per_base_n(out: &mut String, metrics: &crate::core::metrics::FinalMetrics) -> Result<()> {
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_per_seq_n` is never used
[INFO] [stdout]     --> src/report/html.rs:1231:4
[INFO] [stdout]      |
[INFO] [stdout] 1231 | fn module_per_seq_n(out: &mut String, metrics: &crate::core::metrics::FinalMetrics) -> Result<()> {
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_length_dist_short` is never used
[INFO] [stdout]     --> src/report/html.rs:1261:4
[INFO] [stdout]      |
[INFO] [stdout] 1261 | fn module_length_dist_short(
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_length_dist_long` is never used
[INFO] [stdout]     --> src/report/html.rs:1285:4
[INFO] [stdout]      |
[INFO] [stdout] 1285 | fn module_length_dist_long(
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_duplication` is never used
[INFO] [stdout]     --> src/report/html.rs:1320:4
[INFO] [stdout]      |
[INFO] [stdout] 1320 | fn module_duplication(
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_overrep` is never used
[INFO] [stdout]     --> src/report/html.rs:1353:4
[INFO] [stdout]      |
[INFO] [stdout] 1353 | fn module_overrep(out: &mut String, metrics: &crate::core::metrics::FinalMetrics) -> Result<()> {
[INFO] [stdout]      |    ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_adapter_content_short` is never used
[INFO] [stdout]     --> src/report/html.rs:1367:4
[INFO] [stdout]      |
[INFO] [stdout] 1367 | fn module_adapter_content_short(
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_adapter_content_long` is never used
[INFO] [stdout]     --> src/report/html.rs:1382:4
[INFO] [stdout]      |
[INFO] [stdout] 1382 | fn module_adapter_content_long(
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_kmer_content` is never used
[INFO] [stdout]     --> src/report/html.rs:1396:4
[INFO] [stdout]      |
[INFO] [stdout] 1396 | fn module_kmer_content(
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `svg_histogram` is never used
[INFO] [stdout]     --> src/report/html.rs:1520:4
[INFO] [stdout]      |
[INFO] [stdout] 1520 | fn svg_histogram(
[INFO] [stdout]      |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `svg_single_line` is never used
[INFO] [stdout]     --> src/report/html.rs:1797:4
[INFO] [stdout]      |
[INFO] [stdout] 1797 | fn svg_single_line(
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `KMER_CHUNK` is never used
[INFO] [stdout]   --> src/simd/mod.rs:10:11
[INFO] [stdout]    |
[INFO] [stdout] 10 | pub const KMER_CHUNK: usize = 32;
[INFO] [stdout]    |           ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `encode_acgt_chunk` is never used
[INFO] [stdout]   --> src/simd/mod.rs:89:8
[INFO] [stdout]    |
[INFO] [stdout] 89 | pub fn encode_acgt_chunk(seq: &[u8], out: &mut [u8]) -> u32 {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `acgt_2bit_encode_block` is never used
[INFO] [stdout]    --> src/simd/mod.rs:110:8
[INFO] [stdout]     |
[INFO] [stdout] 110 | pub fn acgt_2bit_encode_block(input: &[u8; 16]) -> (u16, [u8; 16]) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `encode_acgt_chunk_scalar` is never used
[INFO] [stdout]   --> src/simd/scalar.rs:55:8
[INFO] [stdout]    |
[INFO] [stdout] 55 | pub fn encode_acgt_chunk_scalar(seq: &[u8], out: &mut [u8]) -> u32 {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `acgt_2bit_encode_block_scalar` is never used
[INFO] [stdout]   --> src/simd/scalar.rs:85:8
[INFO] [stdout]    |
[INFO] [stdout] 85 | pub fn acgt_2bit_encode_block_scalar(input: &[u8; 16]) -> (u16, [u8; 16]) {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `encode_acgt_chunk_avx2` is never used
[INFO] [stdout]    --> src/simd/x86_avx2.rs:139:15
[INFO] [stdout]     |
[INFO] [stdout] 139 | pub unsafe fn encode_acgt_chunk_avx2(seq: &[u8], out: &mut [u8]) -> u32 {
[INFO] [stdout]     |               ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `acgt_2bit_encode_block_avx2` is never used
[INFO] [stdout]    --> src/simd/x86_avx2.rs:167:15
[INFO] [stdout]     |
[INFO] [stdout] 167 | pub unsafe fn acgt_2bit_encode_block_avx2(input: &[u8; 16]) -> (u16, [u8; 16]) {
[INFO] [stdout]     |               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `out_dir` is never read
[INFO] [stdout]   --> src/core/engine.rs:21:9
[INFO] [stdout]    |
[INFO] [stdout] 19 | pub struct RunConfig {
[INFO] [stdout]    |            --------- field in this struct
[INFO] [stdout] 20 |     pub reads1: PathBuf,
[INFO] [stdout] 21 |     pub out_dir: PathBuf,
[INFO] [stdout]    |         ^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `id` is never read
[INFO] [stdout]  --> src/core/fastq.rs:3:9
[INFO] [stdout]   |
[INFO] [stdout] 2 | pub struct ReadView<'a> {
[INFO] [stdout]   |            -------- field in this struct
[INFO] [stdout] 3 |     pub id: &'a [u8],
[INFO] [stdout]   |         ^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `ReadView` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `error` is never read
[INFO] [stdout]   --> src/core/metrics/duplication.rs:42:9
[INFO] [stdout]    |
[INFO] [stdout] 39 | pub struct Entry {
[INFO] [stdout]    |            ----- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 42 |     pub error: u64,
[INFO] [stdout]    |         ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Entry` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `encode_kmer` is never used
[INFO] [stdout]    --> src/core/metrics/kmer_content.rs:149:12
[INFO] [stdout]     |
[INFO] [stdout] 149 |     pub fn encode_kmer(seq: &[u8]) -> Option<u64> {
[INFO] [stdout]     |            ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `pos_bin` is never used
[INFO] [stdout]    --> src/core/metrics/kmer_content.rs:183:12
[INFO] [stdout]     |
[INFO] [stdout] 183 |     pub fn pos_bin(pos: usize, len: usize) -> usize {
[INFO] [stdout]     |            ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `error` is never read
[INFO] [stdout]   --> src/core/metrics/overrepresented.rs:20:9
[INFO] [stdout]    |
[INFO] [stdout] 17 | pub struct Entry {
[INFO] [stdout]    |            ----- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 20 |     pub error: u64,
[INFO] [stdout]    |         ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Entry` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `phred_offset` is never read
[INFO] [stdout]   --> src/core/model/mod.rs:39:9
[INFO] [stdout]    |
[INFO] [stdout] 38 | pub struct FinalizeContext {
[INFO] [stdout]    |            --------------- field in this struct
[INFO] [stdout] 39 |     pub phred_offset: u8,
[INFO] [stdout]    |         ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `write_modern` is never used
[INFO] [stdout]   --> src/report/html.rs:10:4
[INFO] [stdout]    |
[INFO] [stdout] 10 | fn write_modern(path: &Path, output: &RunOutput) -> Result<()> {
[INFO] [stdout]    |    ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `summary_row` is never used
[INFO] [stdout]    --> src/report/html.rs:476:4
[INFO] [stdout]     |
[INFO] [stdout] 476 | fn summary_row(out: &mut String, status: Status, name: &str) -> Result<()> {
[INFO] [stdout]     |    ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_header` is never used
[INFO] [stdout]    --> src/report/html.rs:488:4
[INFO] [stdout]     |
[INFO] [stdout] 488 | fn module_header(out: &mut String, status: Status, title: &str) -> Result<()> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_footer` is never used
[INFO] [stdout]    --> src/report/html.rs:500:4
[INFO] [stdout]     |
[INFO] [stdout] 500 | fn module_footer(out: &mut String) -> Result<()> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `status_class` is never used
[INFO] [stdout]    --> src/report/html.rs:505:4
[INFO] [stdout]     |
[INFO] [stdout] 505 | fn status_class(status: Status) -> &'static str {
[INFO] [stdout]     |    ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_basic_stats` is never used
[INFO] [stdout]     --> src/report/html.rs:1026:4
[INFO] [stdout]      |
[INFO] [stdout] 1026 | fn module_basic_stats(
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_per_base_quality` is never used
[INFO] [stdout]     --> src/report/html.rs:1081:4
[INFO] [stdout]      |
[INFO] [stdout] 1081 | fn module_per_base_quality(
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_per_seq_quality` is never used
[INFO] [stdout]     --> src/report/html.rs:1113:4
[INFO] [stdout]      |
[INFO] [stdout] 1113 | fn module_per_seq_quality(
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_per_base_content` is never used
[INFO] [stdout]     --> src/report/html.rs:1151:4
[INFO] [stdout]      |
[INFO] [stdout] 1151 | fn module_per_base_content(
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_per_seq_gc` is never used
[INFO] [stdout]     --> src/report/html.rs:1171:4
[INFO] [stdout]      |
[INFO] [stdout] 1171 | fn module_per_seq_gc(out: &mut String, metrics: &crate::core::metrics::FinalMetrics) -> Result<()> {
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_per_base_n` is never used
[INFO] [stdout]     --> src/report/html.rs:1198:4
[INFO] [stdout]      |
[INFO] [stdout] 1198 | fn module_per_base_n(out: &mut String, metrics: &crate::core::metrics::FinalMetrics) -> Result<()> {
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_per_seq_n` is never used
[INFO] [stdout]     --> src/report/html.rs:1231:4
[INFO] [stdout]      |
[INFO] [stdout] 1231 | fn module_per_seq_n(out: &mut String, metrics: &crate::core::metrics::FinalMetrics) -> Result<()> {
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_length_dist_short` is never used
[INFO] [stdout]     --> src/report/html.rs:1261:4
[INFO] [stdout]      |
[INFO] [stdout] 1261 | fn module_length_dist_short(
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_length_dist_long` is never used
[INFO] [stdout]     --> src/report/html.rs:1285:4
[INFO] [stdout]      |
[INFO] [stdout] 1285 | fn module_length_dist_long(
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_duplication` is never used
[INFO] [stdout]     --> src/report/html.rs:1320:4
[INFO] [stdout]      |
[INFO] [stdout] 1320 | fn module_duplication(
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_overrep` is never used
[INFO] [stdout]     --> src/report/html.rs:1353:4
[INFO] [stdout]      |
[INFO] [stdout] 1353 | fn module_overrep(out: &mut String, metrics: &crate::core::metrics::FinalMetrics) -> Result<()> {
[INFO] [stdout]      |    ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_adapter_content_short` is never used
[INFO] [stdout]     --> src/report/html.rs:1367:4
[INFO] [stdout]      |
[INFO] [stdout] 1367 | fn module_adapter_content_short(
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_adapter_content_long` is never used
[INFO] [stdout]     --> src/report/html.rs:1382:4
[INFO] [stdout]      |
[INFO] [stdout] 1382 | fn module_adapter_content_long(
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `module_kmer_content` is never used
[INFO] [stdout]     --> src/report/html.rs:1396:4
[INFO] [stdout]      |
[INFO] [stdout] 1396 | fn module_kmer_content(
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `svg_histogram` is never used
[INFO] [stdout]     --> src/report/html.rs:1520:4
[INFO] [stdout]      |
[INFO] [stdout] 1520 | fn svg_histogram(
[INFO] [stdout]      |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `svg_single_line` is never used
[INFO] [stdout]     --> src/report/html.rs:1797:4
[INFO] [stdout]      |
[INFO] [stdout] 1797 | fn svg_single_line(
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `KMER_CHUNK` is never used
[INFO] [stdout]   --> src/simd/mod.rs:10:11
[INFO] [stdout]    |
[INFO] [stdout] 10 | pub const KMER_CHUNK: usize = 32;
[INFO] [stdout]    |           ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `encode_acgt_chunk` is never used
[INFO] [stdout]   --> src/simd/mod.rs:89:8
[INFO] [stdout]    |
[INFO] [stdout] 89 | pub fn encode_acgt_chunk(seq: &[u8], out: &mut [u8]) -> u32 {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `acgt_2bit_encode_block` is never used
[INFO] [stdout]    --> src/simd/mod.rs:110:8
[INFO] [stdout]     |
[INFO] [stdout] 110 | pub fn acgt_2bit_encode_block(input: &[u8; 16]) -> (u16, [u8; 16]) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `encode_acgt_chunk_scalar` is never used
[INFO] [stdout]   --> src/simd/scalar.rs:55:8
[INFO] [stdout]    |
[INFO] [stdout] 55 | pub fn encode_acgt_chunk_scalar(seq: &[u8], out: &mut [u8]) -> u32 {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `acgt_2bit_encode_block_scalar` is never used
[INFO] [stdout]   --> src/simd/scalar.rs:85:8
[INFO] [stdout]    |
[INFO] [stdout] 85 | pub fn acgt_2bit_encode_block_scalar(input: &[u8; 16]) -> (u16, [u8; 16]) {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `encode_acgt_chunk_avx2` is never used
[INFO] [stdout]    --> src/simd/x86_avx2.rs:139:15
[INFO] [stdout]     |
[INFO] [stdout] 139 | pub unsafe fn encode_acgt_chunk_avx2(seq: &[u8], out: &mut [u8]) -> u32 {
[INFO] [stdout]     |               ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `acgt_2bit_encode_block_avx2` is never used
[INFO] [stdout]    --> src/simd/x86_avx2.rs:167:15
[INFO] [stdout]     |
[INFO] [stdout] 167 | pub unsafe fn acgt_2bit_encode_block_avx2(input: &[u8; 16]) -> (u16, [u8; 16]) {
[INFO] [stdout]     |               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 00s
[INFO] running `Command { std: "docker" "inspect" "a4dd35671e63a8644fb013b0bda45c181d8839f1b220ccd199dc798c5ddcdd65", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a4dd35671e63a8644fb013b0bda45c181d8839f1b220ccd199dc798c5ddcdd65", kill_on_drop: false }`
[INFO] [stdout] a4dd35671e63a8644fb013b0bda45c181d8839f1b220ccd199dc798c5ddcdd65