[INFO] fetching crate spdkit-surface 0.1.1... [INFO] checking spdkit-surface-0.1.1 against try#349c4bfa6ac87b818f6fd19d4869c0b24790ac6a for pr-152856 [INFO] extracting crate spdkit-surface 0.1.1 into /workspace/builds/worker-0-tc2/source [INFO] started tweaking crates.io crate spdkit-surface 0.1.1 [INFO] finished tweaking crates.io crate spdkit-surface 0.1.1 [INFO] tweaked toml for crates.io crate spdkit-surface 0.1.1 written to /workspace/builds/worker-0-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate spdkit-surface 0.1.1 on toolchain 349c4bfa6ac87b818f6fd19d4869c0b24790ac6a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+349c4bfa6ac87b818f6fd19d4869c0b24790ac6a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+349c4bfa6ac87b818f6fd19d4869c0b24790ac6a" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 231 packages to latest compatible versions [INFO] [stderr] Adding generic-array v0.14.7 (available: v0.14.9) [INFO] [stderr] Adding handlebars v4.0.1 (available: v4.5.0) [INFO] [stderr] Adding rand v0.8.5 (available: v0.10.0) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+349c4bfa6ac87b818f6fd19d4869c0b24790ac6a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:61361fe0aef631f17e9d025a70c5a647956f8c671dd02950a60ad3f5cc5526d7" "/opt/rustwide/cargo-home/bin/cargo" "+349c4bfa6ac87b818f6fd19d4869c0b24790ac6a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e8f91947a4e0a42aae82014a2bd56ec36542949ec501c9dd1bb4d69ab1e27f3b [INFO] running `Command { std: "docker" "start" "-a" "e8f91947a4e0a42aae82014a2bd56ec36542949ec501c9dd1bb4d69ab1e27f3b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e8f91947a4e0a42aae82014a2bd56ec36542949ec501c9dd1bb4d69ab1e27f3b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e8f91947a4e0a42aae82014a2bd56ec36542949ec501c9dd1bb4d69ab1e27f3b", kill_on_drop: false }` [INFO] [stdout] e8f91947a4e0a42aae82014a2bd56ec36542949ec501c9dd1bb4d69ab1e27f3b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:61361fe0aef631f17e9d025a70c5a647956f8c671dd02950a60ad3f5cc5526d7" "/opt/rustwide/cargo-home/bin/cargo" "+349c4bfa6ac87b818f6fd19d4869c0b24790ac6a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ad0ae985fe0470d7560949f4bd6d83df1473f2e2600d65f18e479d002b47da5d [INFO] running `Command { std: "docker" "start" "-a" "ad0ae985fe0470d7560949f4bd6d83df1473f2e2600d65f18e479d002b47da5d", kill_on_drop: false }` [INFO] [stderr] Checking regex-syntax v0.8.10 [INFO] [stderr] Compiling libm v0.2.16 [INFO] [stderr] Compiling memchr v2.8.0 [INFO] [stderr] Checking aho-corasick v1.1.4 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling signal-hook v0.3.18 [INFO] [stderr] Checking serde_json v1.0.149 [INFO] [stderr] Checking getrandom v0.2.17 [INFO] [stderr] Checking errno v0.3.14 [INFO] [stderr] Compiling zerocopy v0.8.40 [INFO] [stderr] Checking serde v1.0.228 [INFO] [stderr] Checking bitflags v2.11.0 [INFO] [stderr] Checking signal-hook-registry v1.4.8 [INFO] [stderr] Checking bytemuck v1.25.0 [INFO] [stderr] Compiling anyhow v1.0.102 [INFO] [stderr] Compiling typenum v1.19.0 [INFO] [stderr] Checking os_pipe v1.2.3 [INFO] [stderr] Checking encoding_rs v0.8.35 [INFO] [stderr] Checking grep-matcher v0.1.8 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling rustix v1.1.4 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Compiling siphasher v1.0.2 [INFO] [stderr] Compiling getrandom v0.4.1 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking winnow v0.5.40 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Compiling phf_shared v0.11.3 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking toml_datetime v0.6.11 [INFO] [stderr] Checking serde_spanned v0.6.9 [INFO] [stderr] Checking wide v0.7.33 [INFO] [stderr] Checking sigchld v0.2.4 [INFO] [stderr] Checking memmap2 v0.9.10 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking clap_lex v1.0.0 [INFO] [stderr] Checking linux-raw-sys v0.12.1 [INFO] [stderr] Compiling clap_derive v4.5.55 [INFO] [stderr] Checking deranged v0.5.8 [INFO] [stderr] Checking clap_builder v4.5.60 [INFO] [stderr] Checking encoding_rs_io v0.1.7 [INFO] [stderr] Checking shared_child v1.1.1 [INFO] [stderr] Checking regex-automata v0.4.14 [INFO] [stderr] Checking is-terminal v0.4.17 [INFO] [stderr] Checking num-conv v0.2.0 [INFO] [stderr] Checking time-core v0.1.8 [INFO] [stderr] Checking humantime v2.3.0 [INFO] [stderr] Checking duct v0.13.7 [INFO] [stderr] Checking shell-escape v0.1.5 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking ordered-float v3.9.2 [INFO] [stderr] Compiling ucd-trie v0.1.7 [INFO] [stderr] Compiling pest v2.8.6 [INFO] [stderr] Checking time v0.3.47 [INFO] [stderr] Checking toml_edit v0.19.15 [INFO] [stderr] Compiling phf v0.11.3 [INFO] [stderr] Checking base64 v0.20.0 [INFO] [stderr] Checking iana-time-zone v0.1.65 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Checking petgraph v0.6.5 [INFO] [stderr] Checking chrono v0.4.44 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking simba v0.7.3 [INFO] [stderr] Checking deunicode v1.6.2 [INFO] [stderr] Checking str_indices v0.4.4 [INFO] [stderr] Checking minimal-lexical v0.2.1 [INFO] [stderr] Checking ropey v1.6.1 [INFO] [stderr] Checking slug v0.1.6 [INFO] [stderr] Checking humansize v2.1.3 [INFO] [stderr] Checking tempfile v3.26.0 [INFO] [stderr] Checking nom v7.1.3 [INFO] [stderr] Checking bimap v0.6.3 [INFO] [stderr] Checking envy v0.4.2 [INFO] [stderr] Checking quick-error v2.0.1 [INFO] [stderr] Checking clap v4.5.60 [INFO] [stderr] Checking unicode-segmentation v1.12.0 [INFO] [stderr] Compiling pest_meta v2.8.6 [INFO] [stderr] Checking xmlparser v0.13.6 [INFO] [stderr] Checking minijinja v1.0.22 [INFO] [stderr] Checking uom v0.33.0 [INFO] [stderr] Checking roxmltree v0.18.1 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling pest_generator v2.8.6 [INFO] [stderr] Checking bstr v1.12.1 [INFO] [stderr] Checking regex v1.12.3 [INFO] [stderr] Checking env_logger v0.10.2 [INFO] [stderr] Checking toml v0.7.8 [INFO] [stderr] Checking globset v0.4.18 [INFO] [stderr] Checking grep-searcher v0.1.16 [INFO] [stderr] Checking grep-regex v0.1.14 [INFO] [stderr] Checking gchemol-gut v0.4.4 [INFO] [stderr] Checking gchemol-graph v0.1.6 [INFO] [stderr] Checking grep-cli v0.1.12 [INFO] [stderr] Checking ignore v0.4.25 [INFO] [stderr] Compiling pest_derive v2.8.6 [INFO] [stderr] Compiling ppv-lite86 v0.2.21 [INFO] [stderr] Checking handlebars v4.0.1 [INFO] [stderr] Checking grep-printer v0.2.2 [INFO] [stderr] Checking grep-printer v0.1.7 [INFO] [stderr] Compiling parse-zoneinfo v0.3.1 [INFO] [stderr] Compiling lazy-regex-proc_macros v2.4.1 [INFO] [stderr] Checking globwalk v0.9.1 [INFO] [stderr] Checking grep v0.3.2 [INFO] [stderr] Checking grep-reader v0.1.3 [INFO] [stderr] Checking extxyz v0.2.0 [INFO] [stderr] Checking grep v0.2.13 [INFO] [stderr] Checking gchemol-parser v0.4.6 [INFO] [stderr] Checking lazy-regex v2.5.0 [INFO] [stderr] Compiling phf_generator v0.11.3 [INFO] [stderr] Compiling phf_codegen v0.11.3 [INFO] [stderr] Compiling chrono-tz-build v0.3.0 [INFO] [stderr] Compiling chrono-tz v0.9.0 [INFO] [stderr] Checking nalgebra v0.31.4 [INFO] [stderr] Checking tera v1.20.1 [INFO] [stderr] Checking vecfx v0.1.6 [INFO] [stderr] Checking gchemol-lattice v0.1.2 [INFO] [stderr] Checking octree v0.1.0 [INFO] [stderr] Checking gchemol-geometry v0.1.1 [INFO] [stderr] Checking gchemol-neighbors v0.1.3 [INFO] [stderr] Checking gchemol-core v0.1.7 [INFO] [stderr] Checking gchemol-readwrite v0.1.12 [INFO] [stderr] Checking gchemol v0.1.7 [INFO] [stderr] Checking spdkit-surface v0.1.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `gchemol::Lattice` [INFO] [stdout] --> src/layers.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use gchemol::Lattice; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `gchemol::Atom::label`: use get_label instead [INFO] [stdout] --> src/layers.rs:17:33 [INFO] [stdout] | [INFO] [stdout] 17 | mol.atoms().find(|(_, a)| a.label() == format!("{i}")).is_some() [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `gchemol::Atom::label`: use get_label instead [INFO] [stdout] --> src/layers.rs:28:32 [INFO] [stdout] | [INFO] [stdout] 28 | mol.atoms().map(|(_, a)| a.label().parse().unwrap()).collect() [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `n_probes` [INFO] [stdout] --> src/probe.rs:71:59 [INFO] [stdout] | [INFO] [stdout] 71 | pub fn probe_surface_atoms(mol: &Molecule, r_cutoff: f64, n_probes: usize) -> Result> { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_n_probes` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gchemol::Lattice` [INFO] [stdout] --> src/layers.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use gchemol::Lattice; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gchemol::prelude::*` [INFO] [stdout] --> src/lib.rs:11:13 [INFO] [stdout] | [INFO] [stdout] 11 | pub use gchemol::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `gchemol::Atom::label`: use get_label instead [INFO] [stdout] --> src/layers.rs:17:33 [INFO] [stdout] | [INFO] [stdout] 17 | mol.atoms().find(|(_, a)| a.label() == format!("{i}")).is_some() [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `gchemol::Atom::label`: use get_label instead [INFO] [stdout] --> src/layers.rs:28:32 [INFO] [stdout] | [INFO] [stdout] 28 | mol.atoms().map(|(_, a)| a.label().parse().unwrap()).collect() [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `n_probes` [INFO] [stdout] --> src/probe.rs:71:59 [INFO] [stdout] | [INFO] [stdout] 71 | pub fn probe_surface_atoms(mol: &Molecule, r_cutoff: f64, n_probes: usize) -> Result> { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_n_probes` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 59.25s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: gchemol-core v0.1.7 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] running `Command { std: "docker" "inspect" "ad0ae985fe0470d7560949f4bd6d83df1473f2e2600d65f18e479d002b47da5d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ad0ae985fe0470d7560949f4bd6d83df1473f2e2600d65f18e479d002b47da5d", kill_on_drop: false }` [INFO] [stdout] ad0ae985fe0470d7560949f4bd6d83df1473f2e2600d65f18e479d002b47da5d