[INFO] cloning repository https://github.com/informationsea/sequencetoolkit
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/informationsea/sequencetoolkit" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 9cb4d8c1296395af550005a385efd7d521aa15f3
[INFO] checking informationsea/sequencetoolkit against try#595142ec72045c7f2fab2923de8e59995a52e6e7 for pr-151830
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] finished tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] tweaked toml for git repo https://github.com/informationsea/sequencetoolkit written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/informationsea/sequencetoolkit on toolchain 595142ec72045c7f2fab2923de8e59995a52e6e7
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+595142ec72045c7f2fab2923de8e59995a52e6e7" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/informationsea/sequencetoolkit already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+595142ec72045c7f2fab2923de8e59995a52e6e7" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:cfa559dde23f44738f9990739aaa3487d8df3af37eb5df0572f7cf76004a604a" "/opt/rustwide/cargo-home/bin/cargo" "+595142ec72045c7f2fab2923de8e59995a52e6e7" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 939270bee73ba275d1e74e300b91ae3799e312c8324be8d4865a531e9772499e
[INFO] running `Command { std: "docker" "start" "-a" "939270bee73ba275d1e74e300b91ae3799e312c8324be8d4865a531e9772499e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "939270bee73ba275d1e74e300b91ae3799e312c8324be8d4865a531e9772499e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "939270bee73ba275d1e74e300b91ae3799e312c8324be8d4865a531e9772499e", kill_on_drop: false }`
[INFO] [stdout] 939270bee73ba275d1e74e300b91ae3799e312c8324be8d4865a531e9772499e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:cfa559dde23f44738f9990739aaa3487d8df3af37eb5df0572f7cf76004a604a" "/opt/rustwide/cargo-home/bin/cargo" "+595142ec72045c7f2fab2923de8e59995a52e6e7" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 1aa7628cd47854d0414c733746154a7bcfa1f81e8c472e0c23ad9b9a73ab50ba
[INFO] running `Command { std: "docker" "start" "-a" "1aa7628cd47854d0414c733746154a7bcfa1f81e8c472e0c23ad9b9a73ab50ba", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v2.0.114
[INFO] [stderr]    Compiling find-msvc-tools v0.1.8
[INFO] [stderr]     Checking memchr v2.7.6
[INFO] [stderr]    Compiling zerocopy v0.8.35
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]     Checking simd-adler32 v0.3.8
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]     Checking tokio v1.49.0
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[INFO] [stderr]    Compiling newtype_derive v0.1.6
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[INFO] [stderr]    Compiling cc v1.2.54
[INFO] [stderr]    Compiling syn v0.15.44
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[INFO] [stderr]    Compiling quote v0.6.13
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[INFO] [stderr]    Compiling openssl-src v300.5.5+3.5.5
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[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
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[INFO] [stderr]    Compiling openssl-sys v0.9.111
[INFO] [stderr]    Compiling libz-sys v1.1.23
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]     Checking csv v1.4.0
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[INFO] [stderr]    Compiling curl-sys v0.4.85+curl-8.18.0
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[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking rand_core v0.9.5
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling home v0.5.12
[INFO] [stderr]    Compiling which v4.4.2
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]     Checking rand_chacha v0.3.1
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[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]     Checking regex v1.12.2
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]    Compiling lexical-core v0.7.6
[INFO] [stderr]     Checking rand v0.9.2
[INFO] [stderr]    Compiling nom v5.1.3
[INFO] [stderr]     Checking arrayvec v0.5.2
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]    Compiling zmij v1.0.17
[INFO] [stderr]    Compiling failure_derive v0.1.8
[INFO] [stderr]    Compiling synstructure v0.12.6
[INFO] [stderr]     Checking object v0.37.3
[INFO] [stderr]     Checking md-5 v0.10.6
[INFO] [stderr]     Checking chrono v0.4.43
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[INFO] [stderr]     Checking serde_json v1.0.149
[INFO] [stderr]     Checking sha1 v0.10.6
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.8.1
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling zerovec-derive v0.11.2
[INFO] [stderr]    Compiling clap_derive v4.5.55
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling getset v0.1.6
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking zerofrom v0.1.6
[INFO] [stderr]     Checking bgzip v0.3.1
[INFO] [stderr]     Checking yoke v0.8.1
[INFO] [stderr]     Checking zerotrie v0.2.3
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]     Checking vcf v0.6.1
[INFO] [stderr]     Checking zerovec v0.11.5
[INFO] [stderr]     Checking thiserror v2.0.18
[INFO] [stderr]     Checking clap v4.5.55
[INFO] [stderr]     Checking is-terminal v0.4.17
[INFO] [stderr]     Checking itoa v0.4.8
[INFO] [stderr]     Checking temp-file v0.1.9
[INFO] [stderr]     Checking humantime v2.3.0
[INFO] [stderr]     Checking backtrace v0.3.76
[INFO] [stderr]    Compiling sequencetoolkit v0.4.5 (/opt/rustwide/workdir/sequencetoolkit)
[INFO] [stderr]     Checking env_logger v0.10.2
[INFO] [stderr]     Checking tinystr v0.8.2
[INFO] [stderr]     Checking potential_utf v0.1.4
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking icu_collections v2.1.1
[INFO] [stderr]     Checking failure v0.1.8
[INFO] [stderr]     Checking pretty_env_logger v0.5.0
[INFO] [stderr]     Checking serde v1.0.228
[INFO] [stderr]     Checking icu_locale_core v2.1.1
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking bv v0.11.1
[INFO] [stderr]     Checking multimap v0.9.1
[INFO] [stderr]     Checking bincode v1.3.3
[INFO] [stderr]     Checking rmp-serde v1.3.1
[INFO] [stderr]     Checking icu_provider v2.1.1
[INFO] [stderr]     Checking zstd v0.13.3
[INFO] [stderr]     Checking icu_properties v2.1.2
[INFO] [stderr]     Checking icu_normalizer v2.1.1
[INFO] [stderr]     Checking autocompress v0.6.0
[INFO] [stderr]     Checking fastqutils v0.1.0 (/opt/rustwide/workdir/fastqutils)
[INFO] [stderr]     Checking fsutils v0.1.0 (/opt/rustwide/workdir/fsutils)
[INFO] [stderr]     Checking idna_adapter v1.2.1
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]     Checking url v2.5.8
[INFO] [stderr]    Compiling libxlsxwriter-sys v1.1.7
[INFO] [stderr]     Checking statrs v0.16.1
[INFO] [stderr]     Checking bio v3.0.0
[INFO] [stderr]     Checking bedutils v0.1.0 (/opt/rustwide/workdir/bedutils)
[INFO] [stderr]     Checking geneannot v0.1.0 (/opt/rustwide/workdir/geneannot)
[INFO] [stderr]     Checking xlsxwriter v0.6.1
[INFO] [stderr]     Checking vcfutils v0.1.0 (/opt/rustwide/workdir/vcfutils)
[INFO] [stderr]     Checking rust-htslib v0.44.1
[INFO] [stderr]     Checking bam2fastq v0.1.0 (/opt/rustwide/workdir/bam2fastq)
[INFO] [stderr]     Checking bamutils v0.1.0 (/opt/rustwide/workdir/bamutils)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 4m 16s
[INFO] running `Command { std: "docker" "inspect" "1aa7628cd47854d0414c733746154a7bcfa1f81e8c472e0c23ad9b9a73ab50ba", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1aa7628cd47854d0414c733746154a7bcfa1f81e8c472e0c23ad9b9a73ab50ba", kill_on_drop: false }`
[INFO] [stdout] 1aa7628cd47854d0414c733746154a7bcfa1f81e8c472e0c23ad9b9a73ab50ba