[INFO] cloning repository https://github.com/BioInfo/dendrite
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/BioInfo/dendrite" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBioInfo%2Fdendrite", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBioInfo%2Fdendrite'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] d87ddcbb9d4dcaca61fd3a733603a8e2edb9d2b1
[INFO] checking BioInfo/dendrite/d87ddcbb9d4dcaca61fd3a733603a8e2edb9d2b1 against master#d9563937fa3b030c5845811113505070109414d2 for pr-151830
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBioInfo%2Fdendrite" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/BioInfo/dendrite
[INFO] finished tweaking git repo https://github.com/BioInfo/dendrite
[INFO] tweaked toml for git repo https://github.com/BioInfo/dendrite written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/BioInfo/dendrite on toolchain d9563937fa3b030c5845811113505070109414d2
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d9563937fa3b030c5845811113505070109414d2" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/BioInfo/dendrite already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d9563937fa3b030c5845811113505070109414d2" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating git repository `https://github.com/huggingface/candle`
[INFO] [stderr]     Updating git submodule `https://github.com/NVIDIA/cutlass.git`
[INFO] [stderr]     Updating git submodule `https://github.com/NVIDIA/cutlass`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/guoqingbao/bindgen_cuda.git`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rstest v0.23.0
[INFO] [stderr]   Downloaded rayon-cond v0.4.0
[INFO] [stderr]   Downloaded itoa v1.0.16
[INFO] [stderr]   Downloaded borrow-or-share v0.2.4
[INFO] [stderr]   Downloaded monostate-impl v0.1.18
[INFO] [stderr]   Downloaded monostate v0.1.18
[INFO] [stderr]   Downloaded float8 v0.3.0
[INFO] [stderr]   Downloaded float8 v0.5.0
[INFO] [stderr]   Downloaded derivre v0.3.8
[INFO] [stderr]   Downloaded ug v0.5.0
[INFO] [stderr]   Downloaded ryu v1.0.21
[INFO] [stderr]   Downloaded serde_json v1.0.147
[INFO] [stderr]   Downloaded rstest_macros v0.23.0
[INFO] [stderr]   Downloaded tokenizers v0.21.4
[INFO] [stderr]   Downloaded fluent-uri v0.3.2
[INFO] [stderr]   Downloaded referencing v0.29.1
[INFO] [stderr]   Downloaded proptest v1.9.0
[INFO] [stderr]   Downloaded portable-atomic v1.12.0
[INFO] [stderr]   Downloaded zmij v0.1.8
[INFO] [stderr]   Downloaded llguidance v1.4.0
[INFO] [stderr]   Downloaded ug-cuda v0.5.0
[INFO] [stderr]   Downloaded toktrie v1.4.0
[INFO] [stderr]   Downloaded safetensors v0.5.3
[INFO] [stderr]   Downloaded dary_heap v0.3.8
[INFO] [stderr]   Downloaded cudarc v0.18.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:61361fe0aef631f17e9d025a70c5a647956f8c671dd02950a60ad3f5cc5526d7" "/opt/rustwide/cargo-home/bin/cargo" "+d9563937fa3b030c5845811113505070109414d2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 1b8490e1dee733b4d404d1b018ffd2decef1d203fe4cd6bee1020b487590c03e
[INFO] running `Command { std: "docker" "start" "-a" "1b8490e1dee733b4d404d1b018ffd2decef1d203fe4cd6bee1020b487590c03e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "1b8490e1dee733b4d404d1b018ffd2decef1d203fe4cd6bee1020b487590c03e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1b8490e1dee733b4d404d1b018ffd2decef1d203fe4cd6bee1020b487590c03e", kill_on_drop: false }`
[INFO] [stdout] 1b8490e1dee733b4d404d1b018ffd2decef1d203fe4cd6bee1020b487590c03e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:61361fe0aef631f17e9d025a70c5a647956f8c671dd02950a60ad3f5cc5526d7" "/opt/rustwide/cargo-home/bin/cargo" "+d9563937fa3b030c5845811113505070109414d2" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f759d4e72512f6fd1b2b7f7fe600b699bcd8f1399b2d3f44377b237e0c3ff4d2
[INFO] running `Command { std: "docker" "start" "-a" "f759d4e72512f6fd1b2b7f7fe600b699bcd8f1399b2d3f44377b237e0c3ff4d2", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.103
[INFO] [stderr]    Compiling quote v1.0.42
[INFO] [stderr]    Compiling unicode-ident v1.0.22
[INFO] [stderr]    Compiling libc v0.2.178
[INFO] [stderr]     Checking cfg-if v1.0.4
[INFO] [stderr]    Compiling zerocopy v0.8.31
[INFO] [stderr]     Checking once_cell v1.21.3
[INFO] [stderr]    Compiling autocfg v1.5.0
[INFO] [stderr]    Compiling libm v0.2.15
[INFO] [stderr]     Checking memchr v2.7.6
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]    Compiling version_check v0.9.5
[INFO] [stderr]     Checking either v1.15.0
[INFO] [stderr]     Checking bitflags v2.10.0
[INFO] [stderr]    Compiling rayon-core v1.13.0
[INFO] [stderr]     Checking hashbrown v0.16.1
[INFO] [stderr]     Checking equivalent v1.0.2
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]    Compiling serde_json v1.0.147
[INFO] [stderr]    Compiling paste v1.0.15
[INFO] [stderr]     Checking itoa v1.0.16
[INFO] [stderr]     Checking pin-project-lite v0.2.16
[INFO] [stderr]    Compiling find-msvc-tools v0.1.5
[INFO] [stderr]     Checking zmij v0.1.8
[INFO] [stderr]    Compiling winnow v0.7.14
[INFO] [stderr]    Compiling cc v1.2.50
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling glob v0.3.3
[INFO] [stderr]    Compiling dyn-stack-macros v0.1.3
[INFO] [stderr]     Checking indexmap v2.12.1
[INFO] [stderr]     Checking reborrow v0.5.5
[INFO] [stderr]     Checking crossbeam-deque v0.8.6
[INFO] [stderr]    Compiling toml_datetime v0.7.5+spec-1.1.0
[INFO] [stderr]    Compiling pulp v0.21.5
[INFO] [stderr]     Checking raw-cpuid v11.6.0
[INFO] [stderr]    Compiling seq-macro v0.3.6
[INFO] [stderr]     Checking getrandom v0.3.4
[INFO] [stderr]     Checking regex-syntax v0.8.8
[INFO] [stderr]    Compiling syn v2.0.111
[INFO] [stderr]     Checking rand_core v0.9.3
[INFO] [stderr]     Checking rayon v1.11.0
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling aho-corasick v1.1.4
[INFO] [stderr]     Checking tracing-core v0.1.36
[INFO] [stderr]    Compiling pkg-config v0.3.32
[INFO] [stderr]    Compiling rustversion v1.0.22
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling prettyplease v0.2.37
[INFO] [stderr]    Compiling toml_parser v1.0.6+spec-1.1.0
[INFO] [stderr]     Checking smallvec v1.15.1
[INFO] [stderr]    Compiling anyhow v1.0.100
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]    Compiling toml_edit v0.23.10+spec-1.0.0
[INFO] [stderr]    Compiling ident_case v1.0.1
[INFO] [stderr]     Checking futures-core v0.3.31
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]     Checking futures-sink v0.3.31
[INFO] [stderr]    Compiling bindgen v0.71.1
[INFO] [stderr]     Checking regex-automata v0.4.13
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling strsim v0.11.1
[INFO] [stderr]    Compiling fnv v1.0.7
[INFO] [stderr]    Compiling itertools v0.13.0
[INFO] [stderr]     Checking futures-channel v0.3.31
[INFO] [stderr]     Checking num-bigint v0.4.6
[INFO] [stderr]    Compiling ahash v0.8.12
[INFO] [stderr]    Compiling proc-macro-crate v3.4.0
[INFO] [stderr]    Compiling log v0.4.29
[INFO] [stderr]     Checking slab v0.4.11
[INFO] [stderr]    Compiling rustc-hash v2.1.1
[INFO] [stderr]    Compiling thiserror v2.0.17
[INFO] [stderr]     Checking futures-task v0.3.31
[INFO] [stderr]    Compiling parking_lot_core v0.9.12
[INFO] [stderr]     Checking futures-io v0.3.31
[INFO] [stderr]     Checking pin-utils v0.1.0
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]     Checking stable_deref_trait v1.2.1
[INFO] [stderr]     Checking num-iter v0.1.45
[INFO] [stderr]     Checking scopeguard v1.2.0
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]    Compiling zip v1.1.4
[INFO] [stderr]    Compiling ref-cast v1.0.25
[INFO] [stderr]    Compiling semver v1.0.27
[INFO] [stderr]     Checking lock_api v0.4.14
[INFO] [stderr]     Checking memmap2 v0.9.9
[INFO] [stderr]    Compiling rustc_version v0.4.1
[INFO] [stderr]     Checking num_cpus v1.17.0
[INFO] [stderr]    Compiling portable-atomic v1.12.0
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]     Checking parking_lot v0.12.5
[INFO] [stderr]     Checking unicode-width v0.2.2
[INFO] [stderr]    Compiling regex v1.12.2
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking utf8parse v0.2.2
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]     Checking borrow-or-share v0.2.4
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking anstyle-parse v0.2.7
[INFO] [stderr]    Compiling rstest_macros v0.23.0
[INFO] [stderr]     Checking console v0.15.11
[INFO] [stderr]     Checking castaway v0.2.4
[INFO] [stderr]     Checking itertools v0.14.0
[INFO] [stderr]    Compiling relative-path v1.9.3
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling darling_core v0.20.11
[INFO] [stderr] error: could not compile `syn` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/d9563937fa3b030c5845811113505070109414d2/bin/rustc --crate-name syn --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/syn-2.0.111/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no -C debug-assertions=on --cfg 'feature="clone-impls"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="extra-traits"' --cfg 'feature="fold"' --cfg 'feature="full"' --cfg 'feature="parsing"' --cfg 'feature="printing"' --cfg 'feature="proc-macro"' --cfg 'feature="visit"' --cfg 'feature="visit-mut"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clone-impls", "default", "derive", "extra-traits", "fold", "full", "parsing", "printing", "proc-macro", "test", "visit", "visit-mut"))' -C metadata=805d49fa3477b149 -C extra-filename=-9926a65f33bb62fc --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern proc_macro2=/opt/rustwide/target/debug/deps/libproc_macro2-32353c1837936b7e.rmeta --extern quote=/opt/rustwide/target/debug/deps/libquote-d1ec950c4ce05197.rmeta --extern unicode_ident=/opt/rustwide/target/debug/deps/libunicode_ident-61c0e340ad07d159.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: could not compile `clang-sys` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/d9563937fa3b030c5845811113505070109414d2/bin/rustc --crate-name clang_sys --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/clang-sys-1.8.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no -C debug-assertions=on --cfg 'feature="clang_10_0"' --cfg 'feature="clang_11_0"' --cfg 'feature="clang_3_5"' --cfg 'feature="clang_3_6"' --cfg 'feature="clang_3_7"' --cfg 'feature="clang_3_8"' --cfg 'feature="clang_3_9"' --cfg 'feature="clang_4_0"' --cfg 'feature="clang_5_0"' --cfg 'feature="clang_6_0"' --cfg 'feature="clang_7_0"' --cfg 'feature="clang_8_0"' --cfg 'feature="clang_9_0"' --cfg 'feature="libloading"' --cfg 'feature="runtime"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clang_10_0", "clang_11_0", "clang_12_0", "clang_13_0", "clang_14_0", "clang_15_0", "clang_16_0", "clang_17_0", "clang_18_0", "clang_3_5", "clang_3_6", "clang_3_7", "clang_3_8", "clang_3_9", "clang_4_0", "clang_5_0", "clang_6_0", "clang_7_0", "clang_8_0", "clang_9_0", "libcpp", "libloading", "runtime", "static"))' -C metadata=8544dcc1d8e92eff -C extra-filename=-c382b2b9731ad798 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern glob=/opt/rustwide/target/debug/deps/libglob-bc343ba2246a63af.rmeta --extern libc=/opt/rustwide/target/debug/deps/liblibc-4d872662c84dc482.rmeta --extern libloading=/opt/rustwide/target/debug/deps/liblibloading-d9bebe5d07c90d35.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "f759d4e72512f6fd1b2b7f7fe600b699bcd8f1399b2d3f44377b237e0c3ff4d2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f759d4e72512f6fd1b2b7f7fe600b699bcd8f1399b2d3f44377b237e0c3ff4d2", kill_on_drop: false }`
[INFO] [stdout] f759d4e72512f6fd1b2b7f7fe600b699bcd8f1399b2d3f44377b237e0c3ff4d2