[INFO] cloning repository https://github.com/informationsea/sequencetoolkit
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/informationsea/sequencetoolkit" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 9cb4d8c1296395af550005a385efd7d521aa15f3
[INFO] checking informationsea/sequencetoolkit against master#a33907a7a5381473eec8bcfa0c56e05a856a911c for pr-151539
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] finished tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] tweaked toml for git repo https://github.com/informationsea/sequencetoolkit written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/informationsea/sequencetoolkit on toolchain a33907a7a5381473eec8bcfa0c56e05a856a911c
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a33907a7a5381473eec8bcfa0c56e05a856a911c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/informationsea/sequencetoolkit already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a33907a7a5381473eec8bcfa0c56e05a856a911c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded xlsxwriter v0.6.1
[INFO] [stderr]   Downloaded getset v0.1.6
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded multimap v0.9.1
[INFO] [stderr]   Downloaded temp-file v0.1.9
[INFO] [stderr]   Downloaded vcf v0.6.1
[INFO] [stderr]   Downloaded autocompress v0.6.0
[INFO] [stderr]   Downloaded bgzip v0.3.1
[INFO] [stderr]   Downloaded simba v0.6.0
[INFO] [stderr]   Downloaded clap v4.5.55
[INFO] [stderr]   Downloaded zerocopy-derive v0.8.35
[INFO] [stderr]   Downloaded rust-htslib v0.44.1
[INFO] [stderr]   Downloaded statrs v0.16.1
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded clap_builder v4.5.55
[INFO] [stderr]   Downloaded bio v3.0.0
[INFO] [stderr]   Downloaded zerocopy v0.8.35
[INFO] [stderr]   Downloaded nalgebra v0.29.0
[INFO] [stderr]   Downloaded curl-sys v0.4.85+curl-8.18.0
[INFO] [stderr]   Downloaded libxlsxwriter-sys v1.1.7
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] [stderr]   Downloaded openssl-src v300.5.5+3.5.5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:61361fe0aef631f17e9d025a70c5a647956f8c671dd02950a60ad3f5cc5526d7" "/opt/rustwide/cargo-home/bin/cargo" "+a33907a7a5381473eec8bcfa0c56e05a856a911c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 16cd2fcf388bd52b46d5e1e2f24a455c6a22a5f6cbac6999620b11b03a2628d6
[INFO] running `Command { std: "docker" "start" "-a" "16cd2fcf388bd52b46d5e1e2f24a455c6a22a5f6cbac6999620b11b03a2628d6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "16cd2fcf388bd52b46d5e1e2f24a455c6a22a5f6cbac6999620b11b03a2628d6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "16cd2fcf388bd52b46d5e1e2f24a455c6a22a5f6cbac6999620b11b03a2628d6", kill_on_drop: false }`
[INFO] [stdout] 16cd2fcf388bd52b46d5e1e2f24a455c6a22a5f6cbac6999620b11b03a2628d6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:61361fe0aef631f17e9d025a70c5a647956f8c671dd02950a60ad3f5cc5526d7" "/opt/rustwide/cargo-home/bin/cargo" "+a33907a7a5381473eec8bcfa0c56e05a856a911c" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] bde8150732e8bb2b9ce9783282e983c75f1e34ea83236c58da284972349e7ba3
[INFO] running `Command { std: "docker" "start" "-a" "bde8150732e8bb2b9ce9783282e983c75f1e34ea83236c58da284972349e7ba3", kill_on_drop: false }`
[INFO] [stderr]    Compiling libm v0.2.16
[INFO] [stderr]     Checking memchr v2.7.6
[INFO] [stderr]    Compiling zerocopy v0.8.35
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]    Compiling cc v1.2.54
[INFO] [stderr]     Checking flate2 v1.1.8
[INFO] [stderr]     Checking clap_builder v4.5.55
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking tokio v1.49.0
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]    Compiling proc-macro-error-attr2 v2.0.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling getrandom v0.3.4
[INFO] [stderr]     Checking bgzip v0.3.1
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]    Compiling prettyplease v0.2.37
[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking petgraph v0.6.5
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking bit-set v0.8.0
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]    Compiling getset v0.1.6
[INFO] [stderr]    Compiling cmake v0.1.57
[INFO] [stderr]    Compiling openssl-src v300.5.5+3.5.5
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]    Compiling regex-syntax v0.8.8
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]     Checking num-traits v0.2.19
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking rand_core v0.9.5
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling which v4.4.2
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking clap v4.5.55
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking regex-automata v0.4.13
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]    Compiling openssl-sys v0.9.111
[INFO] [stderr]    Compiling libz-sys v1.1.23
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking serde v1.0.228
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking ordered-float v5.1.0
[INFO] [stderr]    Compiling curl-sys v0.4.85+curl-8.18.0
[INFO] [stderr]     Checking bv v0.11.1
[INFO] [stderr]     Checking multimap v0.9.1
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling nom v5.1.3
[INFO] [stderr]     Checking arrayvec v0.5.2
[INFO] [stderr]     Checking bzip2 v0.4.4
[INFO] [stderr]     Checking nom v7.1.3
[INFO] [stderr]     Checking url v2.5.8
[INFO] [stderr]     Checking lexical-core v0.7.6
[INFO] [stderr]     Checking regex v1.12.2
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]    Compiling failure_derive v0.1.8
[INFO] [stderr]    Compiling synstructure v0.12.6
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand_chacha v0.9.0
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking object v0.37.3
[INFO] [stderr]     Checking rand v0.9.2
[INFO] [stderr]     Checking rustc-demangle v0.1.27
[INFO] [stderr]     Checking chrono v0.4.43
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]     Checking rmp v0.8.15
[INFO] [stderr]     Checking vcf v0.6.1
[INFO] [stderr]     Checking serde_json v1.0.149
[INFO] [stderr]     Checking rmp-serde v1.3.1
[INFO] [stderr]     Checking bincode v1.3.3
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]     Checking is-terminal v0.4.17
[INFO] [stderr]     Checking humantime v2.3.0
[INFO] [stderr]     Checking itoa v0.4.8
[INFO] [stderr]     Checking temp-file v0.1.9
[INFO] [stderr]     Checking env_logger v0.10.2
[INFO] [stderr]    Compiling sequencetoolkit v0.4.5 (/opt/rustwide/workdir/sequencetoolkit)
[INFO] [stderr]     Checking pretty_env_logger v0.5.0
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]     Checking zstd v0.13.3
[INFO] [stderr]     Checking autocompress v0.6.0
[INFO] [stderr]     Checking backtrace v0.3.76
[INFO] [stderr]     Checking failure v0.1.8
[INFO] [stderr]     Checking fastqutils v0.1.0 (/opt/rustwide/workdir/fastqutils)
[INFO] [stderr]     Checking fsutils v0.1.0 (/opt/rustwide/workdir/fsutils)
[INFO] [stderr]    Compiling libxlsxwriter-sys v1.1.7
[INFO] [stderr]     Checking statrs v0.16.1
[INFO] [stderr]     Checking bio v3.0.0
[INFO] [stderr]     Checking xlsxwriter v0.6.1
[INFO] [stderr]     Checking bedutils v0.1.0 (/opt/rustwide/workdir/bedutils)
[INFO] [stderr]     Checking geneannot v0.1.0 (/opt/rustwide/workdir/geneannot)
[INFO] [stderr]     Checking vcfutils v0.1.0 (/opt/rustwide/workdir/vcfutils)
[INFO] [stderr]     Checking rust-htslib v0.44.1
[INFO] [stderr]     Checking bamutils v0.1.0 (/opt/rustwide/workdir/bamutils)
[INFO] [stderr]     Checking bam2fastq v0.1.0 (/opt/rustwide/workdir/bam2fastq)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 4m 00s
[INFO] running `Command { std: "docker" "inspect" "bde8150732e8bb2b9ce9783282e983c75f1e34ea83236c58da284972349e7ba3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "bde8150732e8bb2b9ce9783282e983c75f1e34ea83236c58da284972349e7ba3", kill_on_drop: false }`
[INFO] [stdout] bde8150732e8bb2b9ce9783282e983c75f1e34ea83236c58da284972349e7ba3