[INFO] fetching crate deepbiop-cli 0.1.16...
[INFO] checking deepbiop-cli-0.1.16 against master#021fc25b7a48f6051bee1e1f06c7a277e4de1cc9 for pr-151510
[INFO] extracting crate deepbiop-cli 0.1.16 into /workspace/builds/worker-5-tc1/source
[INFO] started tweaking crates.io crate deepbiop-cli 0.1.16
[INFO] finished tweaking crates.io crate deepbiop-cli 0.1.16
[INFO] tweaked toml for crates.io crate deepbiop-cli 0.1.16 written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate deepbiop-cli 0.1.16 on toolchain 021fc25b7a48f6051bee1e1f06c7a277e4de1cc9
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+021fc25b7a48f6051bee1e1f06c7a277e4de1cc9" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate deepbiop-cli 0.1.16 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+021fc25b7a48f6051bee1e1f06c7a277e4de1cc9" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-csi v0.51.0
[INFO] [stderr]   Downloaded pyo3-macros v0.27.1
[INFO] [stderr]   Downloaded noodles-fasta v0.56.0
[INFO] [stderr]   Downloaded clap-markdown v0.1.5
[INFO] [stderr]   Downloaded malachite v0.4.22
[INFO] [stderr]   Downloaded rustpython-parser-vendored v0.4.0
[INFO] [stderr]   Downloaded unicode_names2_generator v1.3.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.43.0
[INFO] [stderr]   Downloaded clap-verbosity-flag v3.0.4
[INFO] [stderr]   Downloaded deepbiop-fa v0.1.16
[INFO] [stderr]   Downloaded bon v3.8.1
[INFO] [stderr]   Downloaded numpy v0.27.0
[INFO] [stderr]   Downloaded bon-macros v3.8.1
[INFO] [stderr]   Downloaded arrow-json v57.0.0
[INFO] [stderr]   Downloaded pyo3-macros-backend v0.27.1
[INFO] [stderr]   Downloaded arrow-ipc v57.0.0
[INFO] [stderr]   Downloaded rustpython-parser v0.4.0
[INFO] [stderr]   Downloaded pyo3-ffi v0.27.1
[INFO] [stderr]   Downloaded deepbiop-utils v0.1.16
[INFO] [stderr]   Downloaded malachite-q v0.4.22
[INFO] [stderr]   Downloaded candle-core v0.9.2-alpha.1
[INFO] [stderr]   Downloaded noodles-sam v0.79.0
[INFO] [stderr]   Downloaded clap_complete v4.5.60
[INFO] [stderr]   Downloaded ug v0.5.0
[INFO] [stderr]   Downloaded rustpython-ast v0.4.0
[INFO] [stderr]   Downloaded unicode_names2 v1.3.0
[INFO] [stderr]   Downloaded pyo3-stub-gen-derive v0.17.0
[INFO] [stderr]   Downloaded pyo3-stub-gen v0.17.0
[INFO] [stderr]   Downloaded deepbiop-fq v0.1.16
[INFO] [stderr]   Downloaded noodles-bam v0.83.0
[INFO] [stderr]   Downloaded arrow-csv v57.0.0
[INFO] [stderr]   Downloaded needletail v0.5.1
[INFO] [stderr]   Downloaded pyo3-build-config v0.27.1
[INFO] [stderr]   Downloaded deepbiop-core v0.1.16
[INFO] [stderr]   Downloaded lexical v7.0.5
[INFO] [stderr]   Downloaded flatbuffers v25.9.23
[INFO] [stderr]   Downloaded rustpython-parser-core v0.4.0
[INFO] [stderr]   Downloaded noodles-fastq v0.21.0
[INFO] [stderr]   Downloaded noodles v0.101.0
[INFO] [stderr]   Downloaded malachite-bigint v0.2.3
[INFO] [stderr]   Downloaded is-macro v0.3.7
[INFO] [stderr]   Downloaded noodles-core v0.18.0
[INFO] [stderr]   Downloaded parquet v57.0.0
[INFO] [stderr]   Downloaded malachite-base v0.4.22
[INFO] [stderr]   Downloaded deepbiop-bam v0.1.16
[INFO] [stderr]   Downloaded pyo3 v0.27.1
[INFO] [stderr]   Downloaded malachite-nz v0.4.22
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+021fc25b7a48f6051bee1e1f06c7a277e4de1cc9" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 03f3b3a5acef153d7688272b0426f35f433107c373bb344a241f46fc625bf9f3
[INFO] running `Command { std: "docker" "start" "-a" "03f3b3a5acef153d7688272b0426f35f433107c373bb344a241f46fc625bf9f3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "03f3b3a5acef153d7688272b0426f35f433107c373bb344a241f46fc625bf9f3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "03f3b3a5acef153d7688272b0426f35f433107c373bb344a241f46fc625bf9f3", kill_on_drop: false }`
[INFO] [stdout] 03f3b3a5acef153d7688272b0426f35f433107c373bb344a241f46fc625bf9f3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+021fc25b7a48f6051bee1e1f06c7a277e4de1cc9" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 0de51078f613fb636c644ebd9e4914c6fa71629b7f651da61246c02b473593b8
[INFO] running `Command { std: "docker" "start" "-a" "0de51078f613fb636c644ebd9e4914c6fa71629b7f651da61246c02b473593b8", kill_on_drop: false }`
[INFO] [stderr]    Compiling zerocopy v0.8.27
[INFO] [stderr]     Checking regex-syntax v0.8.8
[INFO] [stderr]    Compiling syn v2.0.108
[INFO] [stderr]    Compiling getrandom v0.2.16
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]    Compiling pyo3-build-config v0.27.1
[INFO] [stderr]    Compiling cc v1.2.44
[INFO] [stderr]     Checking lexical-util v1.0.7
[INFO] [stderr]     Checking arrow-schema v57.0.0
[INFO] [stderr]     Checking rayon v1.11.0
[INFO] [stderr]    Compiling ahash v0.8.12
[INFO] [stderr]    Compiling libm v0.2.15
[INFO] [stderr]    Compiling pulp v0.21.5
[INFO] [stderr]    Compiling itertools v0.11.0
[INFO] [stderr]    Compiling dyn-stack-macros v0.1.3
[INFO] [stderr]    Compiling malachite-nz v0.4.22
[INFO] [stderr]     Checking flate2 v1.1.5
[INFO] [stderr]     Checking raw-cpuid v11.6.0
[INFO] [stderr]    Compiling unicode-width v0.2.2
[INFO] [stderr]     Checking num-bigint v0.4.6
[INFO] [stderr]    Compiling crunchy v0.2.4
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling tiny-keccak v2.0.2
[INFO] [stderr]     Checking lexical-parse-integer v1.0.6
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]     Checking lexical-write-integer v1.0.6
[INFO] [stderr]    Compiling getopts v0.2.24
[INFO] [stderr]     Checking lexical-parse-float v1.0.6
[INFO] [stderr]    Compiling unic-char-range v0.9.0
[INFO] [stderr]     Checking lexical-write-float v1.0.6
[INFO] [stderr]    Compiling unic-common v0.9.0
[INFO] [stderr]    Compiling unic-ucd-version v0.9.0
[INFO] [stderr]    Compiling unic-char-property v0.9.0
[INFO] [stderr]    Compiling rustpython-parser-vendored v0.4.0
[INFO] [stderr]     Checking noodles-bgzf v0.43.0
[INFO] [stderr]     Checking lexical-core v1.0.6
[INFO] [stderr]    Compiling flatbuffers v25.9.23
[INFO] [stderr]     Checking serde_json v1.0.145
[INFO] [stderr]    Compiling phf v0.11.3
[INFO] [stderr]     Checking winnow v0.7.13
[INFO] [stderr]    Compiling unic-emoji-char v0.9.0
[INFO] [stderr]    Compiling unic-ucd-ident v0.9.0
[INFO] [stderr]     Checking toml_datetime v0.7.3
[INFO] [stderr]     Checking serde_spanned v1.0.3
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]    Compiling indoc v2.0.7
[INFO] [stderr]     Checking regex-automata v0.4.13
[INFO] [stderr]    Compiling lalrpop-util v0.20.2
[INFO] [stderr]     Checking stable_deref_trait v1.2.1
[INFO] [stderr]     Checking toml_writer v1.0.4
[INFO] [stderr]     Checking unindent v0.2.4
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking anstream v0.6.21
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking num-iter v0.1.45
[INFO] [stderr]     Checking lz4_flex v0.11.5
[INFO] [stderr]     Checking memmap2 v0.9.9
[INFO] [stderr]     Checking ordered-float v5.1.0
[INFO] [stderr]     Checking buffer-redux v1.0.2
[INFO] [stderr]    Compiling pyo3-ffi v0.27.1
[INFO] [stderr]    Compiling pyo3-macros-backend v0.27.1
[INFO] [stderr]    Compiling pyo3 v0.27.1
[INFO] [stderr]    Compiling numpy v0.27.0
[INFO] [stderr]     Checking inventory v0.3.21
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]     Checking lexical v7.0.5
[INFO] [stderr]     Checking smawk v0.3.2
[INFO] [stderr]     Checking tempfile v3.23.0
[INFO] [stderr]     Checking clap_builder v4.5.51
[INFO] [stderr]     Checking colored v3.0.0
[INFO] [stderr]    Compiling nix v0.30.1
[INFO] [stderr]     Checking backtrace v0.3.76
[INFO] [stderr]     Checking uuid v1.18.1
[INFO] [stderr]     Checking jiff v0.2.15
[INFO] [stderr]     Checking textwrap v0.16.2
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]     Checking toml_parser v1.0.4
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]     Checking bzip2 v0.4.4
[INFO] [stderr]     Checking toml v0.9.8
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]     Checking needletail v0.5.1
[INFO] [stderr]    Compiling hashbrown v0.14.5
[INFO] [stderr]     Checking ctrlc v3.5.1
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling malachite-base v0.4.22
[INFO] [stderr]    Compiling phf_generator v0.11.3
[INFO] [stderr]     Checking bstr v1.12.1
[INFO] [stderr]     Checking regex v1.12.2
[INFO] [stderr]    Compiling phf_codegen v0.11.3
[INFO] [stderr]    Compiling unicode_names2_generator v1.3.0
[INFO] [stderr]    Compiling rustpython-parser v0.4.0
[INFO] [stderr]     Checking env_filter v0.1.4
[INFO] [stderr]     Checking noodles-core v0.18.0
[INFO] [stderr]     Checking noodles-fastq v0.21.0
[INFO] [stderr]     Checking noodles-csi v0.51.0
[INFO] [stderr]     Checking noodles-fasta v0.56.0
[INFO] [stderr]    Compiling unicode_names2 v1.3.0
[INFO] [stderr]     Checking noodles-sam v0.79.0
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling darling_core v0.20.11
[INFO] [stderr]    Compiling darling_core v0.21.3
[INFO] [stderr]    Compiling prettyplease v0.2.37
[INFO] [stderr]     Checking env_logger v0.11.8
[INFO] [stderr]    Compiling bytemuck_derive v1.10.2
[INFO] [stderr]    Compiling zerocopy-derive v0.8.27
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling derive_more-impl v1.0.0
[INFO] [stderr]    Compiling is-macro v0.3.7
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling tracing-attributes v0.1.30
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]    Compiling num_enum_derive v0.7.5
[INFO] [stderr]    Compiling yoke-derive v0.7.5
[INFO] [stderr]     Checking zstd v0.13.3
[INFO] [stderr]     Checking noodles-bam v0.83.0
[INFO] [stderr]    Compiling rustpython-parser-core v0.4.0
[INFO] [stderr]     Checking zerofrom v0.1.6
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling thiserror-impl v2.0.17
[INFO] [stderr]     Checking bytemuck v1.24.0
[INFO] [stderr]     Checking noodles v0.101.0
[INFO] [stderr]    Compiling clap_derive v4.5.49
[INFO] [stderr]     Checking yoke v0.7.5
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking dyn-stack v0.13.2
[INFO] [stderr]     Checking num_enum v0.7.5
[INFO] [stderr] error: could not compile `malachite-base` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/021fc25b7a48f6051bee1e1f06c7a277e4de1cc9/bin/rustc --crate-name malachite_base --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/malachite-base-0.4.22/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("bin_build", "clap", "getrandom", "gnuplot", "rand", "rand_chacha", "random", "sha3", "test_build", "time", "walkdir"))' -C metadata=e804e88a08a10f08 -C extra-filename=-862c9a8e48fc6ddf --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern hashbrown=/opt/rustwide/target/debug/deps/libhashbrown-b68ebe27b8405d80.rmeta --extern itertools=/opt/rustwide/target/debug/deps/libitertools-66cc9df7b08da5e0.rmeta --extern libm=/opt/rustwide/target/debug/deps/liblibm-f128d9ae83292ab4.rmeta --extern ryu=/opt/rustwide/target/debug/deps/libryu-0fc417cbd813222a.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "0de51078f613fb636c644ebd9e4914c6fa71629b7f651da61246c02b473593b8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0de51078f613fb636c644ebd9e4914c6fa71629b7f651da61246c02b473593b8", kill_on_drop: false }`
[INFO] [stdout] 0de51078f613fb636c644ebd9e4914c6fa71629b7f651da61246c02b473593b8