[INFO] cloning repository https://github.com/informationsea/sequencetoolkit
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/informationsea/sequencetoolkit" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] bd7f92781389d9aca6dfc53f3510bc42e2eab0df
[INFO] checking informationsea/sequencetoolkit against try#a3a874232ae0a7586b5fbe7483c5a42e157bd62a for pr-151109
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] finished tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] tweaked toml for git repo https://github.com/informationsea/sequencetoolkit written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/informationsea/sequencetoolkit on toolchain a3a874232ae0a7586b5fbe7483c5a42e157bd62a
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a3a874232ae0a7586b5fbe7483c5a42e157bd62a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/informationsea/sequencetoolkit already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a3a874232ae0a7586b5fbe7483c5a42e157bd62a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+a3a874232ae0a7586b5fbe7483c5a42e157bd62a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 80d11d83626c5af05a842f43191e149f38b6fedefac14679bbd54e782a9acdab
[INFO] running `Command { std: "docker" "start" "-a" "80d11d83626c5af05a842f43191e149f38b6fedefac14679bbd54e782a9acdab", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "80d11d83626c5af05a842f43191e149f38b6fedefac14679bbd54e782a9acdab", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "80d11d83626c5af05a842f43191e149f38b6fedefac14679bbd54e782a9acdab", kill_on_drop: false }`
[INFO] [stdout] 80d11d83626c5af05a842f43191e149f38b6fedefac14679bbd54e782a9acdab
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+a3a874232ae0a7586b5fbe7483c5a42e157bd62a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 69027a0f21d6d8e8966327e105677c8497f872a882ce02ae37245965a673039f
[INFO] running `Command { std: "docker" "start" "-a" "69027a0f21d6d8e8966327e105677c8497f872a882ce02ae37245965a673039f", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.106
[INFO] [stderr]    Compiling quote v1.0.44
[INFO] [stderr]    Compiling libc v0.2.180
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[INFO] [stderr]     Checking memchr v2.7.6
[INFO] [stderr]    Compiling zerocopy v0.8.35
[INFO] [stderr]    Compiling serde_core v1.0.228
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[INFO] [stderr]     Checking simd-adler32 v0.3.8
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[INFO] [stderr]    Compiling openssl-src v300.5.5+3.5.5
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[INFO] [stderr]    Compiling rustc-hash v1.1.0
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[INFO] [stderr]    Compiling object v0.37.3
[INFO] [stderr]     Checking rand_chacha v0.3.1
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[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
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[INFO] [stderr]    Compiling which v4.4.2
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[INFO] [stderr]    Compiling prettyplease v0.2.37
[INFO] [stderr]     Checking rand_chacha v0.9.0
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[INFO] [stderr]    Compiling serde_json v1.0.149
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[INFO] [stderr]    Compiling thiserror-impl v1.0.69
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[INFO] [stderr]    Compiling serde_derive v1.0.228
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[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling clap_derive v4.5.55
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
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[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]     Checking thiserror v1.0.69
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[INFO] [stderr]     Checking addr2line v0.25.1
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[INFO] [stderr]    Compiling failure_derive v0.1.8
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[INFO] [stderr]     Checking itoa v0.4.8
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]    Compiling sequencetoolkit v0.4.4 (/opt/rustwide/workdir/sequencetoolkit)
[INFO] [stderr]     Checking env_logger v0.10.2
[INFO] [stderr]     Checking tinystr v0.8.2
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[INFO] [stderr]     Checking bv v0.11.1
[INFO] [stderr]     Checking multimap v0.9.1
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking rmp-serde v1.3.1
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[INFO] [stderr]     Checking failure v0.1.8
[INFO] [stderr]    Compiling zstd-safe v7.2.4
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[INFO] [stderr]     Checking idna_adapter v1.2.1
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[INFO] [stderr]     Checking fastqutils v0.1.0 (/opt/rustwide/workdir/fastqutils)
[INFO] [stderr]     Checking fsutils v0.1.0 (/opt/rustwide/workdir/fsutils)
[INFO] [stderr]     Checking bio v3.0.0
[INFO] [stderr]    Compiling libxlsxwriter-sys v1.1.7
[INFO] [stderr]     Checking bedutils v0.1.0 (/opt/rustwide/workdir/bedutils)
[INFO] [stderr]     Checking geneannot v0.1.0 (/opt/rustwide/workdir/geneannot)
[INFO] [stderr]     Checking xlsxwriter v0.6.1
[INFO] [stderr]     Checking vcfutils v0.1.0 (/opt/rustwide/workdir/vcfutils)
[INFO] [stderr]     Checking rust-htslib v0.44.1
[INFO] [stderr]     Checking bam2fastq v0.1.0 (/opt/rustwide/workdir/bam2fastq)
[INFO] [stderr]     Checking bamutils v0.1.0 (/opt/rustwide/workdir/bamutils)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 21s
[INFO] running `Command { std: "docker" "inspect" "69027a0f21d6d8e8966327e105677c8497f872a882ce02ae37245965a673039f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "69027a0f21d6d8e8966327e105677c8497f872a882ce02ae37245965a673039f", kill_on_drop: false }`
[INFO] [stdout] 69027a0f21d6d8e8966327e105677c8497f872a882ce02ae37245965a673039f