[INFO] cloning repository https://github.com/ARU-life-sciences/extract_nhmmer_tblout
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ARU-life-sciences/extract_nhmmer_tblout" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fextract_nhmmer_tblout", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fextract_nhmmer_tblout'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] b463b611c347c1f23d68f2061296df531711728f
[INFO] checking ARU-life-sciences/extract_nhmmer_tblout against master#a6acf0f07f0ed1c12e26dc0db3b9bf1d0504a0bb for pr-151109
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fextract_nhmmer_tblout" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout
[INFO] finished tweaking git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout
[INFO] tweaked toml for git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout on toolchain a6acf0f07f0ed1c12e26dc0db3b9bf1d0504a0bb
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a6acf0f07f0ed1c12e26dc0db3b9bf1d0504a0bb" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a6acf0f07f0ed1c12e26dc0db3b9bf1d0504a0bb" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded errno v0.3.8
[INFO] [stderr]   Downloaded noodles-fasta v0.37.0
[INFO] [stderr]   Downloaded is_terminal_polyfill v1.70.0
[INFO] [stderr]   Downloaded serde_derive v1.0.201
[INFO] [stderr]   Downloaded anstyle-query v1.0.3
[INFO] [stderr]   Downloaded noodles-core v0.15.0
[INFO] [stderr]   Downloaded anstyle-wincon v3.0.3
[INFO] [stderr]   Downloaded utf8parse v0.2.1
[INFO] [stderr]   Downloaded hmm_tblout v0.2.1
[INFO] [stderr]   Downloaded anstyle-parse v0.2.4
[INFO] [stderr]   Downloaded anstyle v1.0.7
[INFO] [stderr]   Downloaded clap_lex v0.7.0
[INFO] [stderr]   Downloaded anstream v0.6.14
[INFO] [stderr]   Downloaded anyhow v1.0.82
[INFO] [stderr]   Downloaded clap v4.5.4
[INFO] [stderr]   Downloaded serde v1.0.201
[INFO] [stderr]   Downloaded crossbeam-channel v0.5.12
[INFO] [stderr]   Downloaded memchr v2.7.2
[INFO] [stderr]   Downloaded crossbeam-utils v0.8.19
[INFO] [stderr]   Downloaded clap_builder v4.5.2
[INFO] [stderr]   Downloaded crc32fast v1.4.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.29.0
[INFO] [stderr]   Downloaded proc-macro2 v1.0.82
[INFO] [stderr]   Downloaded colorchoice v1.0.1
[INFO] [stderr]   Downloaded syn v2.0.61
[INFO] [stderr]   Downloaded bstr v1.9.1
[INFO] [stderr]   Downloaded libc v0.2.154
[INFO] [stderr]   Downloaded linux-raw-sys v0.4.13
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+a6acf0f07f0ed1c12e26dc0db3b9bf1d0504a0bb" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 35dbfe5f9e5222524b622afc508fcad5c651a1cc2137b1f781bec6f7457904d9
[INFO] running `Command { std: "docker" "start" "-a" "35dbfe5f9e5222524b622afc508fcad5c651a1cc2137b1f781bec6f7457904d9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "35dbfe5f9e5222524b622afc508fcad5c651a1cc2137b1f781bec6f7457904d9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "35dbfe5f9e5222524b622afc508fcad5c651a1cc2137b1f781bec6f7457904d9", kill_on_drop: false }`
[INFO] [stdout] 35dbfe5f9e5222524b622afc508fcad5c651a1cc2137b1f781bec6f7457904d9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+a6acf0f07f0ed1c12e26dc0db3b9bf1d0504a0bb" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] b930eecf47683a0b8e7300884c7bbffcffb95f9624d3180cc17741201f17315f
[INFO] running `Command { std: "docker" "start" "-a" "b930eecf47683a0b8e7300884c7bbffcffb95f9624d3180cc17741201f17315f", kill_on_drop: false }`
[INFO] [stderr]    Compiling crossbeam-utils v0.8.19
[INFO] [stderr]    Compiling crc32fast v1.4.0
[INFO] [stderr]     Checking adler2 v2.0.1
[INFO] [stderr]     Checking utf8parse v0.2.1
[INFO] [stderr]     Checking anstyle v1.0.7
[INFO] [stderr]     Checking colorchoice v1.0.1
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.0
[INFO] [stderr]     Checking anstyle-query v1.0.3
[INFO] [stderr]    Compiling rustix v0.38.34
[INFO] [stderr]     Checking memchr v2.7.2
[INFO] [stderr]     Checking clap_lex v0.7.0
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]     Checking strsim v0.11.1
[INFO] [stderr]    Compiling anyhow v1.0.82
[INFO] [stderr]     Checking bitflags v2.5.0
[INFO] [stderr]     Checking linux-raw-sys v0.4.13
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]     Checking bytes v1.6.0
[INFO] [stderr]     Checking anstyle-parse v0.2.4
[INFO] [stderr]     Checking fastrand v2.1.0
[INFO] [stderr]     Checking hmm_tblout v0.2.1
[INFO] [stderr]     Checking anstream v0.6.14
[INFO] [stderr]     Checking clap_builder v4.5.2
[INFO] [stderr]     Checking flate2 v1.1.2
[INFO] [stderr]     Checking bstr v1.9.1
[INFO] [stderr]     Checking crossbeam-channel v0.5.12
[INFO] [stderr]     Checking noodles-bgzf v0.29.0
[INFO] [stderr]     Checking noodles-core v0.15.0
[INFO] [stderr]     Checking noodles-fasta v0.37.0
[INFO] [stderr]     Checking clap v4.5.4
[INFO] [stderr]     Checking tempfile v3.10.1
[INFO] [stderr]     Checking extract_nhmmer_tblout v0.1.31 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 5.86s
[INFO] running `Command { std: "docker" "inspect" "b930eecf47683a0b8e7300884c7bbffcffb95f9624d3180cc17741201f17315f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b930eecf47683a0b8e7300884c7bbffcffb95f9624d3180cc17741201f17315f", kill_on_drop: false }`
[INFO] [stdout] b930eecf47683a0b8e7300884c7bbffcffb95f9624d3180cc17741201f17315f
