[INFO] cloning repository https://github.com/cyanea-io/labs [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/cyanea-io/labs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcyanea-io%2Flabs", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcyanea-io%2Flabs'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 0898378e1eca5c4d13dce43348516e8171395d3e [INFO] testing cyanea-io/labs against try#8da20828b6ea601dfd8e2448cb50ace88876bd78 for pr-150933 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcyanea-io%2Flabs" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'... [INFO] [stderr] done. [INFO] removed /workspace/builds/worker-2-tc2/source/rust-toolchain.toml [INFO] started tweaking git repo https://github.com/cyanea-io/labs [INFO] finished tweaking git repo https://github.com/cyanea-io/labs [INFO] tweaked toml for git repo https://github.com/cyanea-io/labs written to /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/cyanea-io/labs on toolchain 8da20828b6ea601dfd8e2448cb50ace88876bd78 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8da20828b6ea601dfd8e2448cb50ace88876bd78" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/cyanea-io/labs already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8da20828b6ea601dfd8e2448cb50ace88876bd78" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:cfa559dde23f44738f9990739aaa3487d8df3af37eb5df0572f7cf76004a604a" "/opt/rustwide/cargo-home/bin/cargo" "+8da20828b6ea601dfd8e2448cb50ace88876bd78" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] bd3a2f312d618541432a718caa543b4d326cbd29d041a3eec175f5e9786df906 [INFO] running `Command { std: "docker" "start" "-a" "bd3a2f312d618541432a718caa543b4d326cbd29d041a3eec175f5e9786df906", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bd3a2f312d618541432a718caa543b4d326cbd29d041a3eec175f5e9786df906", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bd3a2f312d618541432a718caa543b4d326cbd29d041a3eec175f5e9786df906", kill_on_drop: false }` [INFO] [stdout] bd3a2f312d618541432a718caa543b4d326cbd29d041a3eec175f5e9786df906 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:cfa559dde23f44738f9990739aaa3487d8df3af37eb5df0572f7cf76004a604a" "/opt/rustwide/cargo-home/bin/cargo" "+8da20828b6ea601dfd8e2448cb50ace88876bd78" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 702963adaa73dc18726b76711fb141c563ba5e77ce92dafcce5227778abde07d [INFO] running `Command { std: "docker" "start" "-a" "702963adaa73dc18726b76711fb141c563ba5e77ce92dafcce5227778abde07d", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.106 [INFO] [stderr] Compiling quote v1.0.44 [INFO] [stderr] Compiling unicode-ident v1.0.22 [INFO] [stderr] Compiling libc v0.2.180 [INFO] [stderr] Compiling cfg-if v1.0.4 [INFO] [stderr] Compiling find-msvc-tools v0.1.9 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling typenum v1.19.0 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling crc32fast v1.5.0 [INFO] [stderr] Compiling libm v0.2.16 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling simd-adler32 v0.3.8 [INFO] [stderr] Compiling zstd-safe v7.2.4 [INFO] [stderr] Compiling memchr v2.7.6 [INFO] [stderr] Compiling thiserror v2.0.18 [INFO] [stderr] Compiling zerocopy v0.8.39 [INFO] [stderr] Compiling pyo3-build-config v0.23.5 [INFO] [stderr] Compiling zmij v1.0.19 [INFO] [stderr] Compiling itoa v1.0.17 [INFO] [stderr] Compiling serde_json v1.0.149 [INFO] [stderr] Compiling miniz_oxide v0.8.9 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling bytemuck v1.25.0 [INFO] [stderr] Compiling bytecount v0.6.9 [INFO] [stderr] Compiling regex-syntax v0.8.9 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling ryu v1.0.22 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling generic-array v0.14.7 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling memoffset v0.9.1 [INFO] [stderr] Compiling anstyle v1.0.13 [INFO] [stderr] Compiling flate2 v1.1.9 [INFO] [stderr] Compiling csv-core v0.1.13 [INFO] [stderr] Compiling aho-corasick v1.1.4 [INFO] [stderr] Compiling buffer-redux v1.1.0 [INFO] [stderr] Compiling syn v2.0.114 [INFO] [stderr] Compiling jobserver v0.1.34 [INFO] [stderr] Compiling memmap2 v0.9.9 [INFO] [stderr] Compiling getrandom v0.2.17 [INFO] [stderr] Compiling wide v0.7.33 [INFO] [stderr] Compiling proc-macro-error-attr2 v2.0.0 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling cc v1.2.55 [INFO] [stderr] Compiling crypto-common v0.1.7 [INFO] [stderr] Compiling block-buffer v0.10.4 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling digest v0.10.7 [INFO] [stderr] Compiling ciborium-io v0.2.2 [INFO] [stderr] Compiling hashbrown v0.16.1 [INFO] [stderr] Compiling anyhow v1.0.101 [INFO] [stderr] Compiling clap_lex v0.7.7 [INFO] [stderr] Compiling plotters-backend v0.3.7 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling sha2 v0.10.9 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling plotters-svg v0.3.7 [INFO] [stderr] Compiling clap_builder v4.5.57 [INFO] [stderr] Compiling hashbrown v0.15.5 [INFO] [stderr] Compiling regex-automata v0.4.14 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] 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v0.1.6 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling zstd v0.13.3 [INFO] [stderr] Compiling pyo3-macros v0.23.5 [INFO] [stderr] Compiling cyanea-core v0.1.0 (/opt/rustwide/workdir/cyanea-core) [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling tinytemplate v1.2.1 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling multimap v0.10.1 [INFO] [stderr] Compiling cyanea-ml v0.1.0 (/opt/rustwide/workdir/cyanea-ml) [INFO] [stderr] Compiling cyanea-stats v0.1.0 (/opt/rustwide/workdir/cyanea-stats) [INFO] [stderr] Compiling cyanea-seq v0.1.0 (/opt/rustwide/workdir/cyanea-seq) [INFO] [stderr] Compiling cyanea-align v0.1.0 (/opt/rustwide/workdir/cyanea-align) [INFO] [stderr] Compiling cyanea-struct v0.1.0 (/opt/rustwide/workdir/cyanea-struct) [INFO] [stderr] Compiling cyanea-chem v0.1.0 (/opt/rustwide/workdir/cyanea-chem) [INFO] [stderr] Compiling cyanea-gpu v0.1.0 (/opt/rustwide/workdir/cyanea-gpu) [INFO] [stdout] warning: useless assignment of variable of type `std::arch::x86_64::__m128i` to itself [INFO] [stdout] --> cyanea-align/src/simd_sw.rs:371:21 [INFO] [stdout] | [INFO] [stdout] 371 | vf = vf; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: useless assignment of variable of type `std::arch::x86_64::__m256i` to itself [INFO] [stdout] --> cyanea-align/src/simd_sw.rs:501:21 [INFO] [stdout] | [INFO] [stdout] 501 | vf = vf; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling cyanea-phylo v0.1.0 (/opt/rustwide/workdir/cyanea-phylo) [INFO] [stderr] Compiling cyanea-omics v0.1.0 (/opt/rustwide/workdir/cyanea-omics) [INFO] [stdout] warning: unused import: `crate::sparse::SparseMatrix` [INFO] [stdout] --> cyanea-omics/src/sc_preprocess.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use crate::sparse::SparseMatrix; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `MatrixData` [INFO] [stdout] --> cyanea-omics/src/sc_integrate.rs:7:47 [INFO] [stdout] | [INFO] [stdout] 7 | use crate::single_cell::{AnnData, ColumnData, MatrixData}; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::sparse::SparseMatrix` [INFO] [stdout] --> cyanea-omics/src/sc_integrate.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use crate::sparse::SparseMatrix; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `info_11` is assigned to, but never used [INFO] [stdout] --> cyanea-omics/src/sc_markers.rs:335:9 [INFO] [stdout] | [INFO] [stdout] 335 | let mut info_11 = 0.0; // (1,1) element of X^T W X [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: consider using `_info_11` instead [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `info_11` is never read [INFO] [stdout] --> cyanea-omics/src/sc_markers.rs:340:9 [INFO] [stdout] | [INFO] [stdout] 340 | info_11 += w * x[i * 2 + 1] * x[i * 2 + 1]; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling ppv-lite86 v0.2.21 [INFO] [stderr] Compiling half v2.7.1 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling cyanea-io v0.1.0 (/opt/rustwide/workdir/cyanea-io) [INFO] [stderr] Compiling ciborium-ll v0.2.2 [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/bedgraph.rs:12:12 [INFO] [stdout] | [INFO] [stdout] 12 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/gfa.rs:16:12 [INFO] [stdout] | [INFO] [stdout] 16 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/gfa.rs:29:12 [INFO] [stdout] | [INFO] [stdout] 29 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/gfa.rs:45:12 [INFO] [stdout] | [INFO] [stdout] 45 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/gfa.rs:57:12 [INFO] [stdout] | [INFO] [stdout] 57 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/gfa.rs:71:12 [INFO] [stdout] | [INFO] [stdout] 71 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/blast_xml.rs:11:12 [INFO] [stdout] | [INFO] [stdout] 11 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/blast_xml.rs:29:12 [INFO] [stdout] | [INFO] [stdout] 29 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/blast_xml.rs:39:12 [INFO] [stdout] | [INFO] [stdout] 39 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/blast_xml.rs:55:12 [INFO] [stdout] | [INFO] [stdout] 55 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/abi.rs:14:12 [INFO] [stdout] | [INFO] [stdout] 14 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/abi.rs:30:12 [INFO] [stdout] | [INFO] [stdout] 30 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/fetch.rs:314:12 [INFO] [stdout] | [INFO] [stdout] 314 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/fetch.rs:326:12 [INFO] [stdout] | [INFO] [stdout] 326 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling ciborium v0.2.2 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling criterion v0.5.1 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling nalgebra v0.33.2 [INFO] [stderr] Compiling cyanea-py v0.1.0 (/opt/rustwide/workdir/cyanea-py) [INFO] [stderr] Compiling cyanea-wasm v0.1.0 (/opt/rustwide/workdir/cyanea-wasm) [INFO] [stderr] Compiling statrs v0.18.0 [INFO] [stderr] Compiling bio v3.0.0 [INFO] [stderr] Compiling cyanea-benchmarks v0.1.0 (/opt/rustwide/workdir/benchmarks) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 38s [INFO] running `Command { std: "docker" "inspect" "702963adaa73dc18726b76711fb141c563ba5e77ce92dafcce5227778abde07d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "702963adaa73dc18726b76711fb141c563ba5e77ce92dafcce5227778abde07d", kill_on_drop: false }` [INFO] [stdout] 702963adaa73dc18726b76711fb141c563ba5e77ce92dafcce5227778abde07d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:cfa559dde23f44738f9990739aaa3487d8df3af37eb5df0572f7cf76004a604a" "/opt/rustwide/cargo-home/bin/cargo" "+8da20828b6ea601dfd8e2448cb50ace88876bd78" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d4019af45a6ae84c2590392dcd94b2dd84c30a3dbf5ac65c2b7559aab1688f58 [INFO] running `Command { std: "docker" "start" "-a" "d4019af45a6ae84c2590392dcd94b2dd84c30a3dbf5ac65c2b7559aab1688f58", kill_on_drop: false }` [INFO] [stderr] Compiling getrandom v0.3.4 [INFO] [stderr] Compiling rustix v1.1.3 [INFO] [stderr] Compiling bitflags v2.10.0 [INFO] [stderr] Compiling linux-raw-sys v0.11.0 [INFO] [stderr] Compiling fastrand v2.3.0 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling wait-timeout v0.2.1 [INFO] [stdout] warning: unused import: `crate::sparse::SparseMatrix` [INFO] [stdout] --> cyanea-omics/src/sc_preprocess.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use crate::sparse::SparseMatrix; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `MatrixData` [INFO] [stdout] --> cyanea-omics/src/sc_integrate.rs:7:47 [INFO] [stdout] | [INFO] [stdout] 7 | use crate::single_cell::{AnnData, ColumnData, MatrixData}; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::sparse::SparseMatrix` [INFO] [stdout] --> cyanea-omics/src/sc_integrate.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use crate::sparse::SparseMatrix; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `info_11` is assigned to, but never used [INFO] [stdout] --> cyanea-omics/src/sc_markers.rs:335:9 [INFO] [stdout] | [INFO] [stdout] 335 | let mut info_11 = 0.0; // (1,1) element of X^T W X [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: consider using `_info_11` instead [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `info_11` is never read [INFO] [stdout] --> cyanea-omics/src/sc_markers.rs:340:9 [INFO] [stdout] | [INFO] [stdout] 340 | info_11 += w * x[i * 2 + 1] * x[i * 2 + 1]; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: useless assignment of variable of type `std::arch::x86_64::__m128i` to itself [INFO] [stdout] --> cyanea-align/src/simd_sw.rs:371:21 [INFO] [stdout] | [INFO] [stdout] 371 | vf = vf; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: useless assignment of variable of type `std::arch::x86_64::__m256i` to itself [INFO] [stdout] --> cyanea-align/src/simd_sw.rs:501:21 [INFO] [stdout] | [INFO] [stdout] 501 | vf = vf; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/bedgraph.rs:12:12 [INFO] [stdout] | [INFO] [stdout] 12 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/gfa.rs:16:12 [INFO] [stdout] | [INFO] [stdout] 16 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/gfa.rs:29:12 [INFO] [stdout] | [INFO] [stdout] 29 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/gfa.rs:45:12 [INFO] [stdout] | [INFO] [stdout] 45 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/gfa.rs:57:12 [INFO] [stdout] | [INFO] [stdout] 57 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/gfa.rs:71:12 [INFO] [stdout] | [INFO] [stdout] 71 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/blast_xml.rs:11:12 [INFO] [stdout] | [INFO] [stdout] 11 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling cyanea-wasm v0.1.0 (/opt/rustwide/workdir/cyanea-wasm) [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/blast_xml.rs:29:12 [INFO] [stdout] | [INFO] [stdout] 29 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling cyanea-struct v0.1.0 (/opt/rustwide/workdir/cyanea-struct) [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/blast_xml.rs:39:12 [INFO] [stdout] | [INFO] [stdout] 39 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling cyanea-ml v0.1.0 (/opt/rustwide/workdir/cyanea-ml) [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/blast_xml.rs:55:12 [INFO] [stdout] | [INFO] [stdout] 55 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling cyanea-gpu v0.1.0 (/opt/rustwide/workdir/cyanea-gpu) [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/abi.rs:14:12 [INFO] [stdout] | [INFO] [stdout] 14 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling cyanea-py v0.1.0 (/opt/rustwide/workdir/cyanea-py) [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/abi.rs:30:12 [INFO] [stdout] | [INFO] [stdout] 30 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/fetch.rs:314:12 [INFO] [stdout] | [INFO] [stdout] 314 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/fetch.rs:326:12 [INFO] [stdout] | [INFO] [stdout] 326 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling bit-set v0.8.0 [INFO] [stderr] Compiling rand_core v0.9.5 [INFO] [stderr] Compiling bio v3.0.0 [INFO] [stderr] Compiling rand_chacha v0.9.0 [INFO] [stderr] Compiling rand_xorshift v0.4.0 [INFO] [stderr] Compiling rand v0.9.2 [INFO] [stderr] Compiling tempfile v3.24.0 [INFO] [stderr] Compiling rusty-fork v0.3.1 [INFO] [stderr] Compiling cyanea-omics v0.1.0 (/opt/rustwide/workdir/cyanea-omics) [INFO] [stderr] Compiling cyanea-core v0.1.0 (/opt/rustwide/workdir/cyanea-core) [INFO] [stderr] Compiling cyanea-io v0.1.0 (/opt/rustwide/workdir/cyanea-io) [INFO] [stderr] Compiling proptest v1.10.0 [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/bedgraph.rs:12:12 [INFO] [stdout] | [INFO] [stdout] 12 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/gfa.rs:16:12 [INFO] [stdout] | [INFO] [stdout] 16 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/gfa.rs:29:12 [INFO] [stdout] | [INFO] [stdout] 29 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/gfa.rs:45:12 [INFO] [stdout] | [INFO] [stdout] 45 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/gfa.rs:57:12 [INFO] [stdout] | [INFO] [stdout] 57 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/gfa.rs:71:12 [INFO] [stdout] | [INFO] [stdout] 71 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/blast_xml.rs:11:12 [INFO] [stdout] | [INFO] [stdout] 11 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/blast_xml.rs:29:12 [INFO] [stdout] | [INFO] [stdout] 29 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/blast_xml.rs:39:12 [INFO] [stdout] | [INFO] [stdout] 39 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/blast_xml.rs:55:12 [INFO] [stdout] | [INFO] [stdout] 55 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/abi.rs:14:12 [INFO] [stdout] | [INFO] [stdout] 14 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/abi.rs:30:12 [INFO] [stdout] | [INFO] [stdout] 30 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/fetch.rs:314:12 [INFO] [stdout] | [INFO] [stdout] 314 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `serde` [INFO] [stdout] --> cyanea-io/src/fetch.rs:326:12 [INFO] [stdout] | [INFO] [stdout] 326 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stdout] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::sparse::SparseMatrix` [INFO] [stdout] --> cyanea-omics/src/sc_integrate.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use crate::sparse::SparseMatrix; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `codon_pos_0based` [INFO] [stdout] --> cyanea-omics/src/variant_annotation.rs:1273:13 [INFO] [stdout] | [INFO] [stdout] 1273 | let codon_pos_0based = 100u64; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_codon_pos_0based` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling cyanea-benchmarks v0.1.0 (/opt/rustwide/workdir/benchmarks) [INFO] [stdout] warning: unused variable: `n_dims` [INFO] [stdout] --> cyanea-omics/src/sc_cluster.rs:539:42 [INFO] [stdout] | [INFO] [stdout] 539 | fn make_adata_with_pca(n_obs: usize, n_dims: usize, data: Vec>) -> AnnData { [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_n_dims` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `info_11` is assigned to, but never used [INFO] [stdout] --> cyanea-omics/src/sc_markers.rs:335:9 [INFO] [stdout] | [INFO] [stdout] 335 | let mut info_11 = 0.0; // (1,1) element of X^T W X [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: consider using `_info_11` instead [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `info_11` is never read [INFO] [stdout] --> cyanea-omics/src/sc_markers.rs:340:9 [INFO] [stdout] | [INFO] [stdout] 340 | info_11 += w * x[i * 2 + 1] * x[i * 2 + 1]; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> cyanea-omics/src/sc_integrate.rs:964:13 [INFO] [stdout] | [INFO] [stdout] 964 | let mut data = vec![vec![1.0, 2.0]; 5]; [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling cyanea-stats v0.1.0 (/opt/rustwide/workdir/cyanea-stats) [INFO] [stderr] Compiling cyanea-chem v0.1.0 (/opt/rustwide/workdir/cyanea-chem) [INFO] [stderr] Compiling cyanea-seq v0.1.0 (/opt/rustwide/workdir/cyanea-seq) [INFO] [stderr] Compiling cyanea-align v0.1.0 (/opt/rustwide/workdir/cyanea-align) [INFO] [stderr] Compiling cyanea-phylo v0.1.0 (/opt/rustwide/workdir/cyanea-phylo) [INFO] [stdout] warning: useless assignment of variable of type `std::arch::x86_64::__m128i` to itself [INFO] [stdout] --> cyanea-align/src/simd_sw.rs:371:21 [INFO] [stdout] | [INFO] [stdout] 371 | vf = vf; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: useless assignment of variable of type `std::arch::x86_64::__m256i` to itself [INFO] [stdout] --> cyanea-align/src/simd_sw.rs:501:21 [INFO] [stdout] | [INFO] [stdout] 501 | vf = vf; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 53.70s [INFO] running `Command { std: "docker" "inspect" "d4019af45a6ae84c2590392dcd94b2dd84c30a3dbf5ac65c2b7559aab1688f58", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d4019af45a6ae84c2590392dcd94b2dd84c30a3dbf5ac65c2b7559aab1688f58", kill_on_drop: false }` [INFO] [stdout] d4019af45a6ae84c2590392dcd94b2dd84c30a3dbf5ac65c2b7559aab1688f58 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:cfa559dde23f44738f9990739aaa3487d8df3af37eb5df0572f7cf76004a604a" "/opt/rustwide/cargo-home/bin/cargo" "+8da20828b6ea601dfd8e2448cb50ace88876bd78" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 318c6898146efc786500fb25dadb9db21db260ebf076863f3ec50808c91e80f0 [INFO] running `Command { std: "docker" "start" "-a" "318c6898146efc786500fb25dadb9db21db260ebf076863f3ec50808c91e80f0", kill_on_drop: false }` [INFO] [stderr] warning: useless assignment of variable of type `std::arch::x86_64::__m128i` to itself [INFO] [stderr] --> cyanea-align/src/simd_sw.rs:371:21 [INFO] [stderr] | [INFO] [stderr] 371 | vf = vf; [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: useless assignment of variable of type `std::arch::x86_64::__m256i` to itself [INFO] [stderr] --> cyanea-align/src/simd_sw.rs:501:21 [INFO] [stderr] | [INFO] [stderr] 501 | vf = vf; [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `cyanea-align` (lib) generated 2 warnings [INFO] [stderr] warning: unused import: `crate::sparse::SparseMatrix` [INFO] [stderr] --> cyanea-omics/src/sc_preprocess.rs:9:5 [INFO] [stderr] | [INFO] [stderr] 9 | use crate::sparse::SparseMatrix; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `MatrixData` [INFO] [stderr] --> cyanea-omics/src/sc_integrate.rs:7:47 [INFO] [stderr] | [INFO] [stderr] 7 | use crate::single_cell::{AnnData, ColumnData, MatrixData}; [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `crate::sparse::SparseMatrix` [INFO] [stderr] --> cyanea-omics/src/sc_integrate.rs:8:5 [INFO] [stderr] | [INFO] [stderr] 8 | use crate::sparse::SparseMatrix; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: variable `info_11` is assigned to, but never used [INFO] [stderr] --> cyanea-omics/src/sc_markers.rs:335:9 [INFO] [stderr] | [INFO] [stderr] 335 | let mut info_11 = 0.0; // (1,1) element of X^T W X [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: consider using `_info_11` instead [INFO] [stderr] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: value assigned to `info_11` is never read [INFO] [stderr] --> cyanea-omics/src/sc_markers.rs:340:9 [INFO] [stderr] | [INFO] [stderr] 340 | info_11 += w * x[i * 2 + 1] * x[i * 2 + 1]; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = help: maybe it is overwritten before being read? [INFO] [stderr] = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: `cyanea-omics` (lib) generated 5 warnings (run `cargo fix --lib -p cyanea-omics` to apply 3 suggestions) [INFO] [stderr] warning: unexpected `cfg` condition value: `serde` [INFO] [stderr] --> cyanea-io/src/bedgraph.rs:12:12 [INFO] [stderr] | [INFO] [stderr] 12 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stderr] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unexpected `cfg` condition value: `serde` [INFO] [stderr] --> cyanea-io/src/gfa.rs:16:12 [INFO] [stderr] | [INFO] [stderr] 16 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stderr] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] [INFO] [stderr] warning: unexpected `cfg` condition value: `serde` [INFO] [stderr] --> cyanea-io/src/gfa.rs:29:12 [INFO] [stderr] | [INFO] [stderr] 29 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stderr] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] [INFO] [stderr] warning: unexpected `cfg` condition value: `serde` [INFO] [stderr] --> cyanea-io/src/gfa.rs:45:12 [INFO] [stderr] | [INFO] [stderr] 45 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stderr] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] [INFO] [stderr] warning: unexpected `cfg` condition value: `serde` [INFO] [stderr] --> cyanea-io/src/gfa.rs:57:12 [INFO] [stderr] | [INFO] [stderr] 57 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stderr] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] [INFO] [stderr] warning: unexpected `cfg` condition value: `serde` [INFO] [stderr] --> cyanea-io/src/gfa.rs:71:12 [INFO] [stderr] | [INFO] [stderr] 71 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stderr] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] [INFO] [stderr] warning: unexpected `cfg` condition value: `serde` [INFO] [stderr] --> cyanea-io/src/blast_xml.rs:11:12 [INFO] [stderr] | [INFO] [stderr] 11 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stderr] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] [INFO] [stderr] warning: unexpected `cfg` condition value: `serde` [INFO] [stderr] --> cyanea-io/src/blast_xml.rs:29:12 [INFO] [stderr] | [INFO] [stderr] 29 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stderr] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] [INFO] [stderr] warning: unexpected `cfg` condition value: `serde` [INFO] [stderr] --> cyanea-io/src/blast_xml.rs:39:12 [INFO] [stderr] | [INFO] [stderr] 39 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stderr] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] [INFO] [stderr] warning: unexpected `cfg` condition value: `serde` [INFO] [stderr] --> cyanea-io/src/blast_xml.rs:55:12 [INFO] [stderr] | [INFO] [stderr] 55 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stderr] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] [INFO] [stderr] warning: unexpected `cfg` condition value: `serde` [INFO] [stderr] --> cyanea-io/src/abi.rs:14:12 [INFO] [stderr] | [INFO] [stderr] 14 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stderr] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] [INFO] [stderr] warning: unexpected `cfg` condition value: `serde` [INFO] [stderr] --> cyanea-io/src/abi.rs:30:12 [INFO] [stderr] | [INFO] [stderr] 30 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stderr] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] [INFO] [stderr] warning: unexpected `cfg` condition value: `serde` [INFO] [stderr] --> cyanea-io/src/fetch.rs:314:12 [INFO] [stderr] | [INFO] [stderr] 314 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stderr] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] [INFO] [stderr] warning: unexpected `cfg` condition value: `serde` [INFO] [stderr] --> cyanea-io/src/fetch.rs:326:12 [INFO] [stderr] | [INFO] [stderr] 326 | #[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))] [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: expected values for `feature` are: `abi`, `bam`, `bcf`, `bed`, `bedgraph`, `bigwig`, `blast`, `blast-xml`, `clustal`, `cram`, `csv`, `default`, `embl`, `fetch`, `genbank`, `gfa`, `gff`, `gtf`, `indexed`, `indexed-bam`, `indexed-vcf`, `maf`, `parallel`, `parquet`, `phylip`, `pir`, `sam`, `stockholm`, `variant-calling`, `vcf`, and `wasm` [INFO] [stderr] = help: consider adding `serde` as a feature in `Cargo.toml` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] [INFO] [stderr] warning: `cyanea-io` (lib) generated 14 warnings [INFO] [stderr] warning: `cyanea-io` (lib test) generated 14 warnings (14 duplicates) [INFO] [stderr] warning: unused import: `crate::sparse::SparseMatrix` [INFO] [stderr] --> cyanea-omics/src/sc_integrate.rs:8:5 [INFO] [stderr] | [INFO] [stderr] 8 | use crate::sparse::SparseMatrix; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `codon_pos_0based` [INFO] [stderr] --> cyanea-omics/src/variant_annotation.rs:1273:13 [INFO] [stderr] | [INFO] [stderr] 1273 | let codon_pos_0based = 100u64; [INFO] [stderr] | ^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_codon_pos_0based` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `n_dims` [INFO] [stderr] --> cyanea-omics/src/sc_cluster.rs:539:42 [INFO] [stderr] | [INFO] [stderr] 539 | fn make_adata_with_pca(n_obs: usize, n_dims: usize, data: Vec>) -> AnnData { [INFO] [stderr] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_n_dims` [INFO] [stderr] [INFO] [stderr] warning: variable `info_11` is assigned to, but never used [INFO] [stderr] --> cyanea-omics/src/sc_markers.rs:335:9 [INFO] [stderr] | [INFO] [stderr] 335 | let mut info_11 = 0.0; // (1,1) element of X^T W X [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: consider using `_info_11` instead [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> cyanea-omics/src/sc_integrate.rs:964:13 [INFO] [stderr] | [INFO] [stderr] 964 | let mut data = vec![vec![1.0, 2.0]; 5]; [INFO] [stderr] | ----^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: `cyanea-omics` (lib test) generated 6 warnings (1 duplicate) (run `cargo fix --lib -p cyanea-omics --tests` to apply 4 suggestions) [INFO] [stderr] warning: `cyanea-align` (lib test) generated 2 warnings (2 duplicates) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.47s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/cyanea_align-1a3d46589e107faf) [INFO] [stdout] [INFO] [stdout] running 321 tests [INFO] [stdout] test batch::tests::batch_local_mode ... ok [INFO] [stdout] test batch::tests::batch_multiple_pairs ... ok [INFO] [stdout] test batch::tests::batch_semi_global ... ok [INFO] [stdout] test batch::tests::empty_batch ... ok [INFO] [stdout] test cigar::tests::alignment_to_cigar_basic ... ok [INFO] [stdout] test cigar::tests::alignment_to_cigar_length_mismatch ... ok [INFO] [stdout] test cigar::tests::cigar_alignment_round_trip ... ok [INFO] [stdout] test cigar::tests::cigar_to_alignment_basic ... ok [INFO] [stdout] test cigar::tests::alignment_columns_excludes_clips ... ok [INFO] [stdout] test cigar::tests::all_clips ... ok [INFO] [stdout] test cigar::tests::cigar_to_alignment_with_clips ... ok [INFO] [stdout] test cigar::tests::coverage_basic ... ok [INFO] [stdout] test cigar::tests::coverage_zero_ref ... ok [INFO] [stdout] test cigar::tests::format_empty ... ok [INFO] [stdout] test cigar::tests::gap_count_and_bases ... ok [INFO] [stdout] test cigar::tests::identity_empty ... ok [INFO] [stdout] test cigar::tests::hard_clip_to_soft_conversion ... ok [INFO] [stdout] test cigar::tests::identity_m_only_is_zero ... ok [INFO] [stdout] test cigar::tests::md_tag_with_deletion ... ok [INFO] [stdout] test cigar::tests::md_tag_with_insertion ... ok [INFO] [stdout] test cigar::tests::md_tag_with_m_ops ... ok [INFO] [stdout] test cigar::tests::parse_bad_char ... ok [INFO] [stdout] test cigar::tests::md_tag_with_mismatches ... ok [INFO] [stdout] test cigar::tests::merge_adjacent_idempotent ... ok [INFO] [stdout] test cigar::tests::merge_adjacent_empty ... ok [INFO] [stdout] test cigar::tests::parse_all_nine_ops ... ok [INFO] [stdout] test cigar::tests::parse_empty_is_error ... ok [INFO] [stdout] test cigar::tests::parse_complex ... ok [INFO] [stdout] test cigar::tests::parse_simple ... ok [INFO] [stdout] test cigar::tests::parse_trailing_digits ... ok [INFO] [stdout] test cigar::tests::parse_star ... ok [INFO] [stdout] test cigar::tests::ref_query_consumed ... ok [INFO] [stdout] test cigar::tests::parse_missing_count ... ok [INFO] [stdout] test cigar::tests::single_op ... ok [INFO] [stdout] test cigar::tests::reverse_cigar_order ... ok [INFO] [stdout] test cigar::tests::validate_empty ... ok [INFO] [stdout] test cigar::tests::md_tag_perfect_match ... ok [INFO] [stdout] test cigar::tests::validate_s_at_invalid_position ... ok [INFO] [stdout] test cigar::tests::validate_adjacent_duplicates ... ok [INFO] [stdout] test cigar::tests::validate_zero_length ... ok [INFO] [stdout] test gpu::common::tests::encode_base_values ... ok [INFO] [stdout] test gpu::common::tests::encode_pairs_round_trip ... ok [INFO] [stdout] test gpu::common::tests::extract_dna_scoring ... ok [INFO] [stdout] test cigar::tests::clipped_bases_totals ... ok [INFO] [stdout] test cigar::tests::collapse_matches_eq_x_to_m ... ok [INFO] [stdout] test cigar::tests::format_round_trip ... ok [INFO] [stdout] test cigar::tests::identity_with_eq_x ... ok [INFO] [stdout] test cigar::tests::merge_adjacent_combines ... ok [INFO] [stdout] test cigar::tests::split_at_reference_basic ... ok [INFO] [stdout] test cigar::tests::split_at_reference_boundary ... ok [INFO] [stdout] test cigar::tests::validate_valid ... ok [INFO] [stdout] test cigar::tests::validate_s_adjacent_to_h ... ok [INFO] [stdout] test gpu::common::tests::extract_no_substitution_for_simple ... ok [INFO] [stdout] test gpu::common::tests::partition_within_bandwidth ... ok [INFO] [stdout] test cigar::tests::split_at_reference_zero ... ok [INFO] [stdout] test cigar::tests::validate_h_not_at_ends ... ok [INFO] [stdout] test gpu::tests::cpu_fallback_correctness ... ok [INFO] [stdout] test gpu::tests::available_backends_returns_list ... ok [INFO] [stdout] test gpu::tests::gpu_fallback_small_batch ... ok [INFO] [stdout] test lcsk::tests::chain_is_colinear ... ok [INFO] [stdout] test gpu::tests::config_default ... ok [INFO] [stdout] test gpu::tests::gpu_fallback_empty ... ok [INFO] [stdout] test lcsk::tests::completely_different_sequences ... ok [INFO] [stdout] test lcsk::tests::empty_matches_gives_zero ... ok [INFO] [stdout] test lcsk::tests::error_on_k_zero ... ok [INFO] [stdout] test lcsk::tests::error_on_sequence_shorter_than_k ... ok [INFO] [stdout] test lcsk::tests::fenwick_basic_update_query ... ok [INFO] [stdout] test lcsk::tests::kmer_matches_identical ... ok [INFO] [stdout] test lcsk::tests::k_equals_sequence_length ... ok [INFO] [stdout] test lcsk::tests::kmer_matches_short_sequence ... ok [INFO] [stdout] test cigar::proptests::merge_preserves_lengths ... ok [INFO] [stdout] test cigar::proptests::ref_consumed_consistent ... ok [INFO] [stdout] test lcsk::tests::fenwick_empty ... ok [INFO] [stdout] test lcsk::tests::identical_sequences ... ok [INFO] [stdout] test lcsk::tests::known_lcs_case ... ok [INFO] [stdout] test lcsk::tests::lcsk_adjacent_plusplus ... ok [INFO] [stdout] test lcsk::tests::lcsk_empty_matches ... ok [INFO] [stdout] test lcsk::tests::lcsk_single_match ... ok [INFO] [stdout] test lcsk::tests::lcsk_non_overlapping_chain ... ok [INFO] [stdout] test lcsk::tests::repetitive_sequences ... ok [INFO] [stdout] test lcsk::tests::score_does_not_exceed_shorter_sequence ... ok [INFO] [stdout] test lcsk::tests::single_kmer_match ... ok [INFO] [stdout] test minimizers::tests::basic_minimizer_extraction ... ok [INFO] [stdout] test minimizers::tests::case_insensitivity ... ok [INFO] [stdout] test minimizers::tests::deduplication_consecutive_same_minimizer ... ok [INFO] [stdout] test minimizers::tests::error_k_too_large ... ok [INFO] [stdout] test minimizers::tests::error_k_zero ... ok [INFO] [stdout] test minimizers::tests::error_sequence_too_short ... ok [INFO] [stdout] test minimizers::tests::error_w_zero ... ok [INFO] [stdout] test lcsk::tests::kmer_matches_no_overlap ... ok [INFO] [stdout] test minimizers::tests::k32_works ... ok [INFO] [stdout] test minimizers::tests::k_equals_1_w_equals_1 ... ok [INFO] [stdout] test minimizers::tests::kmer_hashing_correctness ... ok [INFO] [stdout] test minimizers::tests::minimizers_on_homopolymer ... ok [INFO] [stdout] test minimizers::tests::seed_matches_are_sorted ... ok [INFO] [stdout] test minimizers::tests::seed_matching_identical_sequences ... ok [INFO] [stdout] test minimizers::tests::seed_matching_related_sequences ... ok [INFO] [stdout] test minimizers::tests::seed_matching_unrelated_sequences ... ok [INFO] [stdout] test minimizers::tests::sequence_exactly_k_long ... ok [INFO] [stdout] test minimizers::tests::window_sliding_produces_ordered_positions ... ok [INFO] [stdout] test msa::tests::msa_column_access ... ok [INFO] [stdout] test msa::tests::msa_conservation_partial ... ok [INFO] [stdout] test msa::tests::msa_different_lengths ... ok [INFO] [stdout] test msa::tests::msa_too_few_sequences ... ok [INFO] [stdout] test msa::tests::msa_two_sequences ... ok [INFO] [stdout] test msa::tests::msa_empty_sequence_error ... ok [INFO] [stdout] test msa::tests::msa_identical_sequences ... ok [INFO] [stdout] test needleman_wunsch::tests::empty_sequence_errors ... ok [INFO] [stdout] test needleman_wunsch::tests::gap_insertion ... ok [INFO] [stdout] test needleman_wunsch::tests::identical_sequences ... ok [INFO] [stdout] test needleman_wunsch::tests::single_base ... ok [INFO] [stdout] test needleman_wunsch::tests::single_mismatch ... ok [INFO] [stdout] test pair_hmm::tests::custom_params_high_gap_extend ... ok [INFO] [stdout] test pair_hmm::tests::custom_params_high_gap_penalty ... ok [INFO] [stdout] test pair_hmm::tests::default_params_produce_finite_results ... ok [INFO] [stdout] test pair_hmm::tests::forward_different_lengths ... ok [INFO] [stdout] test pair_hmm::tests::forward_error_on_both_empty ... ok [INFO] [stdout] test pair_hmm::tests::forward_error_on_empty_a ... ok [INFO] [stdout] test pair_hmm::tests::forward_error_on_empty_b ... ok [INFO] [stdout] test pair_hmm::tests::forward_identical_higher_than_mismatch ... ok [INFO] [stdout] test pair_hmm::tests::forward_identical_sequences ... ok [INFO] [stdout] test pair_hmm::tests::forward_short_length_one ... ok [INFO] [stdout] test pair_hmm::tests::forward_score_gte_viterbi_score ... ok [INFO] [stdout] test pair_hmm::tests::log_sum_exp_neg_infinity ... ok [INFO] [stdout] test pair_hmm::tests::viterbi_error_on_empty ... ok [INFO] [stdout] test pair_hmm::tests::viterbi_gap_in_a_produces_insert_y ... ok [INFO] [stdout] test cigar::proptests::parse_format_round_trip ... ok [INFO] [stdout] test pair_hmm::tests::viterbi_gap_produces_insert_state ... ok [INFO] [stdout] test pair_hmm::tests::viterbi_identical_all_match ... ok [INFO] [stdout] test needleman_wunsch::tests::completely_different ... ok [INFO] [stdout] test needleman_wunsch::tests::protein_with_blosum62 ... ok [INFO] [stdout] test pair_hmm::tests::log_sum_exp_basic ... ok [INFO] [stdout] test pair_hmm::tests::viterbi_identical_score_reasonable ... ok [INFO] [stdout] test pair_hmm::tests::forward_short_length_two ... ok [INFO] [stdout] test pair_hmm::tests::viterbi_single_base_mismatch ... ok [INFO] [stdout] test pair_hmm::tests::viterbi_two_bases ... ok [INFO] [stdout] test poa::tests::empty_graph_consensus ... ok [INFO] [stdout] test poa::tests::empty_sequence_error ... ok [INFO] [stdout] test pair_hmm::tests::viterbi_path_length_equals_sequence_consumption ... ok [INFO] [stdout] test poa::tests::from_sequence_creates_linear_graph ... ok [INFO] [stdout] test pair_hmm::tests::viterbi_single_base_match ... ok [INFO] [stdout] test poa::tests::five_sequences_strong_consensus ... ok [INFO] [stdout] test poa::tests::from_sequence_empty ... ok [INFO] [stdout] test poa::tests::single_base_sequences ... ok [INFO] [stdout] test poa::tests::num_sequences_tracks_correctly ... ok [INFO] [stdout] test poa::tests::single_sequence_consensus ... ok [INFO] [stdout] test poa::tests::three_sequences_majority_rules ... ok [INFO] [stdout] test poa::tests::three_sequences_with_insertion ... ok [INFO] [stdout] test poa::tests::two_sequences_with_deletion ... ok [INFO] [stdout] test poa::tests::to_dot_valid_syntax ... ok [INFO] [stdout] test profile_hmm::tests::alphabet_encode_dna ... ok [INFO] [stdout] test profile_hmm::tests::alphabet_encode_protein ... ok [INFO] [stdout] test profile_hmm::tests::backward_error_empty ... ok [INFO] [stdout] test profile_hmm::tests::backward_different_sequences ... ok [INFO] [stdout] test profile_hmm::tests::config_constructors ... ok [INFO] [stdout] test poa::tests::three_way_majority_with_snp ... ok [INFO] [stdout] test profile_hmm::tests::backward_matches_forward ... ok [INFO] [stdout] test poa::tests::two_identical_sequences ... ok [INFO] [stdout] test pair_hmm::tests::viterbi_mismatch_lower_score ... ok [INFO] [stdout] test profile_hmm::tests::backward_finite ... ok [INFO] [stdout] test poa::tests::custom_scoring ... ok [INFO] [stdout] test poa::tests::two_sequences_single_snp ... ok [INFO] [stdout] test profile_hmm::tests::calibrate_error_zero_samples ... ok [INFO] [stdout] test poa::tests::topological_sort_linear ... ok [INFO] [stdout] test profile_hmm::tests::forward_finite ... ok [INFO] [stdout] test profile_hmm::tests::from_msa_error_empty ... ok [INFO] [stdout] test profile_hmm::tests::from_msa_basic ... ok [INFO] [stdout] test profile_hmm::tests::from_msa_error_single_seq ... ok [INFO] [stdout] test profile_hmm::tests::forward_error_empty ... ok [INFO] [stdout] test profile_hmm::tests::from_msa_protein ... ok [INFO] [stdout] test poa::tests::add_to_empty_graph_error ... ok [INFO] [stdout] test profile_hmm::tests::evalue_error_before_calibration ... ok [INFO] [stdout] test profile_hmm::tests::viterbi_consumes_full_sequence ... ok [INFO] [stdout] test profile_hmm::tests::new_validates_dimensions ... ok [INFO] [stdout] test profile_hmm::tests::from_msa_with_gaps ... ok [INFO] [stdout] test profile_hmm::tests::forward_identical_higher ... ok [INFO] [stdout] test profile_hmm::tests::local_vs_global_mode ... ok [INFO] [stdout] test profile_hmm::tests::forward_short_sequence ... ok [INFO] [stdout] test profile_hmm::tests::forward_gte_viterbi ... ok [INFO] [stdout] test profile_hmm::tests::viterbi_error_empty ... ok [INFO] [stdout] test profile_hmm::tests::viterbi_error_invalid_char ... ok [INFO] [stdout] test profile_hmm::tests::viterbi_identical_sequence ... ok [INFO] [stdout] test scoring::tests::blosum62_diagonal_spot_checks ... ok [INFO] [stdout] test scoring::tests::blosum62_gap_penalties ... ok [INFO] [stdout] test profile_hmm::tests::viterbi_longer_seq_has_inserts ... ok [INFO] [stdout] test profile_hmm::tests::viterbi_shorter_seq_has_deletes ... ok [INFO] [stdout] test cigar::proptests::query_consumed_consistent ... ok [INFO] [stdout] test scoring::tests::blosum80_diagonal ... ok [INFO] [stdout] test scoring::tests::from_conversions ... ok [INFO] [stdout] test scoring::tests::pam120_gap_penalties ... ok [INFO] [stdout] test profile_hmm::tests::calibrate_sets_params ... ok [INFO] [stdout] test profile_hmm::tests::viterbi_path_positions_monotonic ... ok [INFO] [stdout] test scoring::tests::blosum62_off_diagonal ... ok [INFO] [stdout] test scoring::tests::blosum30_diagonal_spot_checks ... ok [INFO] [stdout] test scoring::tests::dna_score_pair_case_insensitive ... ok [INFO] [stdout] test scoring::tests::blosum30_gap_penalties ... ok [INFO] [stdout] test scoring::tests::pam200_gap_penalties ... ok [INFO] [stdout] test scoring::tests::pam200_diagonal_spot_checks ... ok [INFO] [stdout] test profile_hmm::tests::viterbi_score_negative ... ok [INFO] [stdout] test scoring::tests::pam250_diagonal ... ok [INFO] [stdout] test scoring::tests::pam40_diagonal_spot_checks ... ok [INFO] [stdout] test scoring::tests::pam40_gap_penalties ... ok [INFO] [stdout] test scoring::tests::dna_default_values ... ok [INFO] [stdout] test scoring::tests::pam120_diagonal_spot_checks ... ok [INFO] [stdout] test seed_extend::tests::alignment_with_insertions_and_deletions ... ok [INFO] [stdout] test seed_extend::tests::chain_colinear_seeds ... ok [INFO] [stdout] test seed_extend::tests::alignment_produces_valid_cigar ... ok [INFO] [stdout] test scoring::tests::unrecognised_residue_returns_worst ... ok [INFO] [stdout] test scoring::tests::pam40_symmetry ... ok [INFO] [stdout] test scoring::tests::scoring_matrix_validation ... ok [INFO] [stdout] test scoring::tests::scoring_scheme_delegates ... ok [INFO] [stdout] test seed_extend::tests::chain_non_colinear_filtered ... ok [INFO] [stdout] test seed_extend::tests::chain_gap_penalty_prefers_close_seeds ... ok [INFO] [stdout] test seed_extend::tests::chain_out_of_order_seeds ... ok [INFO] [stdout] test seed_extend::tests::chain_scoring_positive ... ok [INFO] [stdout] test seed_extend::tests::chain_single_seed ... ok [INFO] [stdout] test seed_extend::tests::completely_different_sequences_fallback ... ok [INFO] [stdout] test seed_extend::tests::empty_sequence_error ... ok [INFO] [stdout] test semi_global::tests::adapter_trimming ... ok [INFO] [stdout] test semi_global::tests::empty_sequence_errors ... ok [INFO] [stdout] test seed_extend::tests::chain_respects_max_gap ... ok [INFO] [stdout] test seed_extend::tests::identical_sequences ... ok [INFO] [stdout] test seed_extend::tests::chain_empty_seeds_error ... ok [INFO] [stdout] test seed_extend::tests::longer_sequences_with_shared_regions ... ok [INFO] [stdout] test semi_global::tests::single_base ... ok [INFO] [stdout] test semi_global::tests::target_contained_in_query ... ok [INFO] [stdout] test seed_extend::tests::related_sequences_with_mutations ... ok [INFO] [stdout] test seed_extend::tests::short_sequences_fallback ... ok [INFO] [stdout] test semi_global::tests::no_match_region ... ok [INFO] [stdout] test semi_global::tests::protein_semi_global ... ok [INFO] [stdout] test semi_global::tests::query_contained_in_target ... ok [INFO] [stdout] test simd::tests::banded_empty_sequence_error ... ok [INFO] [stdout] test simd::tests::banded_nw_identical ... ok [INFO] [stdout] test simd::tests::banded_nw_with_mismatch ... ok [INFO] [stdout] test simd::tests::banded_score_only_global ... ok [INFO] [stdout] test simd::tests::banded_score_only_local ... ok [INFO] [stdout] test simd::tests::banded_score_only_semi_global ... ok [INFO] [stdout] test simd::tests::banded_semi_global_identical ... ok [INFO] [stdout] test semi_global::tests::overlap_detection ... ok [INFO] [stdout] test simd::tests::banded_semi_global_overlap ... ok [INFO] [stdout] test simd_sw::tests::scalar_identical ... ok [INFO] [stdout] test simd::tests::banded_semi_global_query_in_target ... ok [INFO] [stdout] test simd::tests::banded_sw_identical ... ok [INFO] [stdout] test simd::tests::banded_sw_local ... ok [INFO] [stdout] test simd::tests::banded_zero_bandwidth_error ... ok [INFO] [stdout] test simd_sw::tests::scalar_all_mismatch ... ok [INFO] [stdout] test simd_sw::tests::scalar_with_gap ... ok [INFO] [stdout] test simd_sw::tests::simd_sw_all_mismatch ... ok [INFO] [stdout] test semi_global::tests::identical_sequences ... ok [INFO] [stdout] test simd_sw::tests::simd_score_matches_scalar ... ok [INFO] [stdout] test simd_sw::tests::simd_sw_empty_error ... ok [INFO] [stdout] test simd_sw::tests::simd_sw_identical ... ok [INFO] [stdout] test smith_waterman::tests::full_match ... ok [INFO] [stdout] test smith_waterman::tests::local_alignment_ignores_poor_flanks ... ok [INFO] [stdout] test smith_waterman::tests::local_match_in_flanks ... ok [INFO] [stdout] test simd_sw::tests::simd_sw_mismatch ... ok [INFO] [stdout] test smith_waterman::tests::no_match_returns_zero ... ok [INFO] [stdout] test smith_waterman::tests::query_start_end_reflect_local_region ... ok [INFO] [stdout] test simd_sw::tests::simd_sw_long_sequence ... ok [INFO] [stdout] test smith_waterman::tests::empty_sequence_errors ... ok [INFO] [stdout] test simd_sw::tests::simd_sw_asymmetric_lengths ... ok [INFO] [stdout] test spliced::tests::chain_splice_bonus ... ok [INFO] [stdout] test spliced::tests::chain_two_exons ... ok [INFO] [stdout] test smith_waterman::tests::single_base_match ... ok [INFO] [stdout] test spliced::tests::chain_colinearity ... ok [INFO] [stdout] test spliced::tests::chain_empty_error ... ok [INFO] [stdout] test spliced::tests::chain_three_exons ... ok [INFO] [stdout] test profile_hmm::tests::evalue_decreases_with_score ... ok [INFO] [stdout] test scoring::tests::blosum45_diagonal ... ok [INFO] [stdout] test spliced::tests::empty_error ... ok [INFO] [stdout] test spliced::tests::exon_coordinates ... ok [INFO] [stdout] test tests::align_global_end_to_end ... ok [INFO] [stdout] test spliced::tests::detect_at_ac ... ok [INFO] [stdout] test spliced::tests::one_intron_gt_ag ... ok [INFO] [stdout] test tests::align_local_end_to_end ... ok [INFO] [stdout] test types::tests::cigar_op_display ... ok [INFO] [stdout] test types::tests::cigar_string_formatting ... ok [INFO] [stdout] test tests::align_semi_global ... ok [INFO] [stdout] test spliced::tests::detect_gc_ag ... ok [INFO] [stdout] test tests::align_protein_global ... ok [INFO] [stdout] test spliced::tests::single_exon_no_intron ... ok [INFO] [stdout] test types::tests::identity_empty_alignment ... ok [INFO] [stdout] test types::tests::consumes_reference_and_query ... ok [INFO] [stdout] test types::tests::identity_with_mismatches_and_gaps ... ok [INFO] [stdout] test types::tests::gap_count ... ok [INFO] [stdout] test types::tests::scored_trait ... ok [INFO] [stdout] test spliced::tests::detect_gt_ag ... ok [INFO] [stdout] test types::tests::identity_perfect_match ... ok [INFO] [stdout] test wfa::tests::single_base_match ... ok [INFO] [stdout] test wfa::tests::score_matches_nw ... ok [INFO] [stdout] test wfa::tests::single_insertion ... ok [INFO] [stdout] test wfa::tests::single_mismatch ... ok [INFO] [stdout] test spliced::tests::cigar_has_skip ... ok [INFO] [stdout] test wfa::tests::substitution_matrix_rejected ... ok [INFO] [stdout] test spliced::tests::min_intron_enforced ... ok [INFO] [stdout] test xdrop::tests::dropped_flag_set ... ok [INFO] [stdout] test xdrop::tests::early_termination ... ok [INFO] [stdout] test xdrop::tests::empty_error ... ok [INFO] [stdout] test xdrop::tests::identical_sequences ... ok [INFO] [stdout] test xdrop::tests::left_extension_reversal ... ok [INFO] [stdout] test xdrop::tests::matches_sw_for_short ... ok [INFO] [stdout] test types::tests::cigar_string_mixed_ops ... ok [INFO] [stdout] test xdrop::tests::seed_extend_combine ... ok [INFO] [stdout] test wfa::tests::long_similar_sequences ... ok [INFO] [stdout] test wfa::tests::single_deletion ... ok [INFO] [stdout] test wfa::tests::identical_sequences ... ok [INFO] [stdout] test xdrop::tests::seed_extend_out_of_bounds ... ok [INFO] [stdout] test xdrop::tests::zdrop_extend ... ok [INFO] [stdout] test spliced::tests::detect_noncanonical ... ok [INFO] [stdout] test wfa::tests::identical_longer ... ok [INFO] [stdout] test wfa::tests::empty_sequence_errors ... ok [INFO] [stdout] test xdrop::tests::single_base ... ok [INFO] [stdout] test xdrop::tests::zdrop_more_permissive ... ok [INFO] [stdout] test xdrop::tests::zdrop_seed_extend_combine ... ok [INFO] [stdout] test proptests::identical_sequences_perfect_identity ... ok [INFO] [stdout] test xdrop::proptests::xdrop_deterministic ... ok [INFO] [stdout] test spliced::proptests::spliced_align_deterministic ... ok [INFO] [stdout] test proptests::identity_in_unit_interval ... ok [INFO] [stdout] test wfa::proptests::wfa_score_equals_nw_score ... ok [INFO] [stdout] test proptests::local_score_nonnegative ... ok [INFO] [stdout] test proptests::alignment_score_is_deterministic ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 321 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 1.65s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/cyanea_benchmarks-83a86e7016ec853a) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/cyanea_chem-88a2050781b54174) [INFO] [stdout] [INFO] [stdout] running 200 tests [INFO] [stdout] test canon::tests::canonical_benzene_from_different_inputs ... ok [INFO] [stdout] test canon::tests::canonical_branching ... ok [INFO] [stdout] test canon::tests::canonical_benzene_roundtrip ... ok [INFO] [stdout] test canon::tests::canonical_disconnected_fragments ... ok [INFO] [stdout] test canon::tests::canonical_double_bond ... ok [INFO] [stdout] test canon::tests::canonical_ethanol_roundtrip ... ok [INFO] [stdout] test canon::tests::canonical_ethanol_from_different_inputs ... ok [INFO] [stdout] test canon::tests::canonical_propane_variants ... ok [INFO] [stdout] test canon::tests::canonical_charged_atom ... ok [INFO] [stdout] test canon::tests::canonical_ring ... ok [INFO] [stdout] test canon::tests::canonical_preserves_formula ... ok [INFO] [stdout] test canon::tests::canonical_deterministic ... ok [INFO] [stdout] test canon::tests::canonical_smiles_methane ... ok [INFO] [stdout] test canon::tests::canonical_smiles_empty ... ok [INFO] [stdout] test conformer::tests::distance_basic ... ok [INFO] [stdout] test conformer::tests::dihedral_basic ... ok [INFO] [stdout] test conformer::tests::conformer_set_sort_and_best ... ok [INFO] [stdout] test conformer::tests::rmsd_identical ... ok [INFO] [stdout] test conformer::tests::rmsd_mismatched_size ... ok [INFO] [stdout] test conformer::tests::rmsd_different ... ok [INFO] [stdout] test descriptors::tests::autocorrelation_size ... ok [INFO] [stdout] test descriptors::tests::chi_connectivity_nonzero ... ok [INFO] [stdout] test descriptors::tests::estate_indices_count ... ok [INFO] [stdout] test descriptors::tests::bertz_ct_nontrivial ... ok [INFO] [stdout] test descriptors::tests::logp_reasonable ... ok [INFO] [stdout] test descriptors::tests::fraction_sp3_cyclohexane ... ok [INFO] [stdout] test descriptors::tests::tpsa_aspirin ... ok [INFO] [stdout] test descriptors::tests::naphthalene_fused_rings ... ok [INFO] [stdout] test conformer::tests::angle_right_angle ... ok [INFO] [stdout] test descriptors::tests::zagreb_benzene ... ok [INFO] [stdout] test druglikeness::tests::aspirin_passes_lipinski ... ok [INFO] [stdout] test descriptors::tests::empty_molecule_zeros ... ok [INFO] [stdout] test descriptors::tests::compute_all_has_entries ... ok [INFO] [stdout] test descriptors::tests::kappa_indices_positive ... ok [INFO] [stdout] test druglikeness::tests::qed_has_properties ... ok [INFO] [stdout] test druglikeness::tests::benign_molecule_passes_brenk ... ok [INFO] [stdout] test descriptors::tests::fraction_sp3_benzene ... ok [INFO] [stdout] test druglikeness::tests::benign_molecule_passes_pains ... ok [INFO] [stdout] test druglikeness::tests::large_molecule_fails_lipinski ... ok [INFO] [stdout] test druglikeness::tests::lead_likeness_boundaries ... ok [INFO] [stdout] test druglikeness::tests::epoxide_triggers_brenk ... ok [INFO] [stdout] test druglikeness::tests::qed_druglike_range ... ok [INFO] [stdout] test descriptors::tests::balaban_j_positive_for_connected ... ok [INFO] [stdout] test druglikeness::tests::michael_acceptor_triggers_pains ... ok [INFO] [stdout] test canon::tests::canonical_triple_bond ... ok [INFO] [stdout] test descriptors::tests::wiener_index_hexane ... ok [INFO] [stdout] test druglikeness::tests::aspirin_veber ... ok [INFO] [stdout] test element::tests::lookup_carbon_by_symbol ... ok [INFO] [stdout] test druglikeness::tests::drug_likeness_report_complete ... ok [INFO] [stdout] test embed::tests::embed_methane ... ok [INFO] [stdout] test element::tests::lookup_nitrogen_by_number ... ok [INFO] [stdout] test element::tests::unknown_returns_none ... ok [INFO] [stdout] test embed::tests::simple_rng_deterministic ... ok [INFO] [stdout] test embed::tests::bounds_matrix_basic ... ok [INFO] [stdout] test embed::tests::embed_ethane ... ok [INFO] [stdout] test embed::tests::embed_no_forcefield ... ok [INFO] [stdout] test embed::tests::embed_deterministic ... ok [INFO] [stdout] test embed::tests::embed_empty ... ok [INFO] [stdout] test embed::tests::embed_ethanol ... ok [INFO] [stdout] test conformer::tests::centroid_basic ... ok [INFO] [stdout] test fingerprint::tests::bit_operations ... ok [INFO] [stdout] test forcefield::tests::energy_atom_count_mismatch ... ok [INFO] [stdout] test fingerprint::tests::deterministic_fingerprint ... ok [INFO] [stdout] test forcefield::tests::benzene_uff_types ... ok [INFO] [stdout] test forcefield::tests::exclusion_set_ethane ... ok [INFO] [stdout] test forcefield::tests::mmff94_type_assignment ... ok [INFO] [stdout] test forcefield::tests::mmff94_aromatic_nitrogen ... ok [INFO] [stdout] test forcefield::tests::conjugate_gradient_minimize ... ok [INFO] [stdout] test forcefield::tests::mmff94_energy_ethane ... ok [INFO] [stdout] test forcefield::tests::minimize_result_steps ... ok [INFO] [stdout] test forcefield::tests::uff_energy_single_atom ... ok [INFO] [stdout] test embed::tests::embed_multiple_conformers ... ok [INFO] [stdout] test embed::tests::embed_with_mmff94 ... ok [INFO] [stdout] test forcefield::tests::uff_energy_components_positive ... ok [INFO] [stdout] test forcefield::tests::uff_energy_ethane ... ok [INFO] [stdout] test forcefield::tests::uff_minimize_basic ... ok [INFO] [stdout] test forcefield::tests::uff_type_aromatic ... ok [INFO] [stdout] test gasteiger::tests::acetic_acid_carbonyl_o_more_negative ... ok [INFO] [stdout] test gasteiger::tests::charges_sum_near_zero_for_neutral ... ok [INFO] [stdout] test gasteiger::tests::empty_molecule ... ok [INFO] [stdout] test gasteiger::tests::methane_all_zero ... ok [INFO] [stdout] test forcefield::tests::uff_type_assignment ... ok [INFO] [stdout] test embed::tests::embed_conformer_set_sorted ... ok [INFO] [stdout] test embed::tests::simple_rng_range ... ok [INFO] [stdout] test maccs::tests::chlorobenzene_halogen_and_aromatic ... ok [INFO] [stdout] test maccs::tests::ethanol_oxygen_and_hydroxyl ... ok [INFO] [stdout] test maccs::tests::methane_minimal_keys ... ok [INFO] [stdout] test fingerprint::tests::tanimoto_identical_is_one ... ok [INFO] [stdout] test properties::tests::formula_of_glucose ... ok [INFO] [stdout] test properties::tests::hbd_hba_of_ethanol ... ok [INFO] [stdout] test molecule::tests::heavy_atom_count ... ok [INFO] [stdout] test gasteiger::tests::oxygen_is_negative ... ok [INFO] [stdout] test maccs::tests::tanimoto_similar_maccs_reasonable ... ok [INFO] [stdout] test maccs::tests::aspirin_many_keys ... ok [INFO] [stdout] test molecule::tests::summarizable_and_content_addressable ... ok [INFO] [stdout] test forcefield::tests::mmff94_minimize_basic ... ok [INFO] [stdout] test properties::tests::properties_of_aspirin ... ok [INFO] [stdout] test embed::tests::embed_benzene_planarity ... ok [INFO] [stdout] test reaction::tests::atom_atom_map_identical ... ok [INFO] [stdout] test reaction::tests::parse_reaction_invalid ... ok [INFO] [stdout] test properties::tests::rotatable_bonds_of_butane ... ok [INFO] [stdout] test reaction::tests::enumerate_single_component ... ok [INFO] [stdout] test reaction::tests::apply_reaction_dedup ... ok [INFO] [stdout] test reaction::tests::apply_reaction_no_match ... ok [INFO] [stdout] test reaction::tests::atom_atom_map_basic ... ok [INFO] [stdout] test reaction::tests::parse_reaction_maps ... ok [INFO] [stdout] test reaction::tests::reaction_product_has_smiles ... ok [INFO] [stdout] test maccs::tests::benzene_aromatic_ring_key ... ok [INFO] [stdout] test maccs::tests::empty_molecule_no_keys ... ok [INFO] [stdout] test molecule::tests::neighbors_and_degree ... ok [INFO] [stdout] test properties::tests::mw_of_water ... ok [INFO] [stdout] test reaction::tests::retrosynthetic_amide ... ok [INFO] [stdout] test reaction::tests::retrosynthetic_ether ... ok [INFO] [stdout] test reaction::tests::retrosynthetic_ester ... ok [INFO] [stdout] test maccs::tests::deterministic_fingerprint ... ok [INFO] [stdout] test reaction::tests::retrosynthetic_has_precursors ... ok [INFO] [stdout] test reaction::tests::retrosynthetic_no_match ... ok [INFO] [stdout] test reaction::tests::retrosynthetic_secondary_amine ... ok [INFO] [stdout] test reaction::tests::strip_atom_maps_basic ... ok [INFO] [stdout] test ring::tests::naphthalene_two_rings ... ok [INFO] [stdout] test scaffold::tests::generic_scaffold_all_carbon ... ok [INFO] [stdout] test ring::tests::acyclic_no_rings ... ok [INFO] [stdout] test ring::tests::benzene_one_ring ... ok [INFO] [stdout] test reaction::tests::apply_reaction_basic ... ok [INFO] [stdout] test fingerprint::tests::tanimoto_different_in_range ... ok [INFO] [stdout] test scaffold::tests::mcs_benzene_toluene ... ok [INFO] [stdout] test reaction::tests::parse_reaction_basic ... ok [INFO] [stdout] test scaffold::tests::r_group_toluene_benzene_core ... ok [INFO] [stdout] test sdf::tests::parse_minimal_mol ... ok [INFO] [stdout] test sdf::tests::malformed_mol_error ... ok [INFO] [stdout] test scaffold::tests::mcs_empty_molecule ... ok [INFO] [stdout] test sdf::tests::parse_mol_with_charges ... ok [INFO] [stdout] test sdf::tests::parse_v3000_minimal_methane ... ok [INFO] [stdout] test sdf::tests::parse_multi_molecule_sdf ... ok [INFO] [stdout] test scaffold::tests::mcs_identical_molecules ... ok [INFO] [stdout] test scaffold::tests::murcko_acyclic_empty ... ok [INFO] [stdout] test sdf::tests::malformed_v3000_error ... ok [INFO] [stdout] test sdf::tests::parse_mixed_sdf_v2000_and_v3000 ... ok [INFO] [stdout] test sdf::tests::parse_v3000_with_charges ... ok [INFO] [stdout] test sdf::tests::parse_v3000_with_bonds ... ok [INFO] [stdout] test smarts::tests::atom_map_parsing ... ok [INFO] [stdout] test smarts::tests::aromatic_matches ... ok [INFO] [stdout] test smarts::tests::atom_map_no_map ... ok [INFO] [stdout] test scaffold::tests::murcko_aspirin ... ok [INFO] [stdout] test scaffold::tests::murcko_caffeine ... ok [INFO] [stdout] test scaffold::tests::r_group_core_not_found ... ok [INFO] [stdout] test smarts::tests::atom_map_partial ... ok [INFO] [stdout] test smarts::tests::atomic_num_excludes_nitrogen ... ok [INFO] [stdout] test smarts::tests::atomic_num_matches_carbon ... ok [INFO] [stdout] test smarts::tests::chain_pattern ... ok [INFO] [stdout] test smarts::tests::find_all_returns_mappings ... ok [INFO] [stdout] test smarts::tests::benzene_pattern_matches ... ok [INFO] [stdout] test smarts::tests::or_combination ... ok [INFO] [stdout] test smarts::tests::recursive_smarts_hydroxyl ... ok [INFO] [stdout] test smarts::tests::degree_matches ... ok [INFO] [stdout] test smarts::tests::wildcard_matches_any ... ok [INFO] [stdout] test smiles::tests::invalid_smiles_error ... ok [INFO] [stdout] test smiles::tests::parse_benzene ... ok [INFO] [stdout] test smiles::tests::parse_bracket_atom ... ok [INFO] [stdout] test smiles::tests::parse_branching ... ok [INFO] [stdout] test smarts::tests::invalid_smarts_error ... ok [INFO] [stdout] test smarts::tests::ring_member_matches ... ok [INFO] [stdout] test smarts::tests::not_carbon ... ok [INFO] [stdout] test smiles::tests::parse_double_bond ... ok [INFO] [stdout] test smiles::tests::parse_ethanol ... ok [INFO] [stdout] test smiles::tests::parse_methane ... ok [INFO] [stdout] test standardize::tests::largest_fragment_keeps_biggest ... ok [INFO] [stdout] test standardize::tests::neutralize_amine ... ok [INFO] [stdout] test smiles::tests::parse_two_digit_ring_closure ... ok [INFO] [stdout] test smarts::tests::ring_size_matches ... ok [INFO] [stdout] test sdf::tests::parse_sdf_autodetect_v3000 ... ok [INFO] [stdout] test standardize::tests::neutralize_thiolate ... ok [INFO] [stdout] test standardize::tests::pipeline_idempotent ... ok [INFO] [stdout] test standardize::tests::single_fragment_unchanged ... ok [INFO] [stdout] test stereo::tests::assign_ez_cis ... ok [INFO] [stdout] test standardize::tests::strip_salts_removes_sodium ... ok [INFO] [stdout] test standardize::tests::canonical_tautomer_returns_molecule ... ok [INFO] [stdout] test standardize::tests::empty_molecule ... ok [INFO] [stdout] test stereo::tests::assign_ez_returns_none_without_stereo_markers ... ok [INFO] [stdout] test stereo::tests::assign_rs_returns_none_for_non_stereo ... ok [INFO] [stdout] test stereo::tests::assign_rs_returns_none_for_symmetric ... ok [INFO] [stdout] test stereo::tests::parse_bond_stereo_down ... ok [INFO] [stdout] test stereo::tests::assign_ez_returns_none_for_single_bond ... ok [INFO] [stdout] test stereo::tests::chirality_opposite_descriptors ... ok [INFO] [stdout] test stereo::tests::parse_chirality_at_single ... ok [INFO] [stdout] test stereo::tests::no_chirality_by_default ... ok [INFO] [stdout] test stereo::tests::parse_bond_stereo_up ... ok [INFO] [stdout] test stereo::tests::assign_ez_trans ... ok [INFO] [stdout] test stereo::tests::assign_rs_l_alanine ... ok [INFO] [stdout] test stereo::tests::parse_chirality_at ... ok [INFO] [stdout] test scaffold::tests::mcs_timeout_returns_partial ... ok [INFO] [stdout] test standardize::tests::standardize_sodium_acetate ... ok [INFO] [stdout] test standardize::tests::strip_salts_removes_chloride ... ok [INFO] [stdout] test substructure::tests::benzene_in_phenol ... ok [INFO] [stdout] test substructure::tests::no_match_benzene_in_cyclohexane ... ok [INFO] [stdout] test substructure::tests::multiple_matches ... ok [INFO] [stdout] test molecule::tests::construction_and_adjacency ... ok [INFO] [stdout] test smiles::proptests::parse_smiles_does_not_panic ... ok [INFO] [stdout] test smiles::proptests::formula_is_deterministic ... ok [INFO] [stdout] test smiles::proptests::atom_count_positive_on_success ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 200 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.34s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/cyanea_core-8ea9cc65bb1b4ceb) [INFO] [stdout] [INFO] [stdout] running 58 tests [INFO] [stdout] test bitvec::tests::all_ones ... ok [INFO] [stdout] test bitvec::tests::select0_basic ... ok [INFO] [stdout] test bitvec::tests::all_zeros ... ok [INFO] [stdout] test bitvec::tests::get_bits ... ok [INFO] [stdout] test bitvec::tests::select1_basic ... ok [INFO] [stdout] test bitvec::tests::rank_basic ... ok [INFO] [stdout] test bitvec::tests::rank_large_bitvec ... ok [INFO] [stdout] test bitvec::tests::rank0_basic ... ok [INFO] [stdout] test bitvec::tests::rank_empty ... ok [INFO] [stdout] test bitvec::tests::wavelet_access ... ok [INFO] [stdout] test bitvec::tests::select1_large ... ok [INFO] [stdout] test bitvec::tests::wavelet_dna_encoded ... ok [INFO] [stdout] test bitvec::tests::wavelet_invalid ... ok [INFO] [stdout] test bitvec::tests::wavelet_rank ... ok [INFO] [stdout] test bitvec::tests::wavelet_select ... ok [INFO] [stdout] test bitvec::tests::wavelet_single_symbol ... ok [INFO] [stdout] test compress::tests::test_auto_decompress_unknown ... ok [INFO] [stdout] test fenwick::tests::from_slice_prefix_sum ... ok [INFO] [stdout] test fenwick::tests::incremental_updates ... ok [INFO] [stdout] test fenwick::tests::f64_values ... ok [INFO] [stdout] test compress::tests::test_detect_gzip ... ok [INFO] [stdout] test bitvec::tests::wavelet_empty ... ok [INFO] [stdout] test compress::tests::test_detect_unknown ... ok [INFO] [stdout] test bitvec::tests::wavelet_binary_alphabet ... ok [INFO] [stdout] test fenwick::tests::large_tree ... ok [INFO] [stdout] test fenwick::tests::len_and_is_empty ... ok [INFO] [stdout] test fenwick::tests::range_sum ... ok [INFO] [stdout] test fenwick::tests::negative_values ... ok [INFO] [stdout] test fenwick::tests::update_and_query ... ok [INFO] [stdout] test compress::tests::test_gzip_roundtrip ... ok [INFO] [stdout] test prob::tests::convert_logprob_to_phred ... ok [INFO] [stdout] test prob::tests::convert_phred_to_logprob ... ok [INFO] [stdout] test hash::tests::test_sha256_file ... ok [INFO] [stdout] test fenwick::tests::update_then_range ... ok [INFO] [stdout] test prob::tests::logprob_certain_impossible ... ok [INFO] [stdout] test compress::tests::test_auto_decompress_gzip ... ok [INFO] [stdout] test hash::tests::test_sha256_empty ... ok [INFO] [stdout] test prob::tests::logprob_from_prob_half ... ok [INFO] [stdout] test prob::tests::logprob_from_prob_one ... ok [INFO] [stdout] test prob::tests::logprob_invalid ... ok [INFO] [stdout] test prob::tests::logprob_ln_add_identity ... ok [INFO] [stdout] test prob::tests::logprob_ln_add ... ok [INFO] [stdout] test prob::tests::logprob_roundtrip ... ok [INFO] [stdout] test prob::tests::logprob_ln_mul ... ok [INFO] [stdout] test prob::tests::phredprob_from_prob ... ok [INFO] [stdout] test prob::tests::phredprob_invalid ... ok [INFO] [stdout] test prob::tests::phredprob_roundtrip ... ok [INFO] [stdout] test compress::tests::test_detect_zstd ... ok [INFO] [stdout] test mmap::tests::test_mmap_roundtrip ... ok [INFO] [stdout] test prob::tests::phred_logprob_roundtrip_conversion ... ok [INFO] [stdout] test prob::tests::phredprob_from_phred ... ok [INFO] [stdout] test hash::tests::test_sha256 ... ok [INFO] [stdout] test fenwick::tests::new_all_zeros ... ok [INFO] [stdout] test fenwick::tests::single_element ... ok [INFO] [stdout] test mmap::tests::test_mmap_not_found ... ok [INFO] [stdout] test hash::tests::test_sha256_file_not_found ... ok [INFO] [stdout] test compress::tests::test_auto_decompress_zstd ... ok [INFO] [stdout] test compress::tests::test_zstd_roundtrip ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 58 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/cyanea_gpu-f10cc5ea427f072d) [INFO] [stdout] [INFO] [stdout] running 62 tests [INFO] [stdout] test backend::tests::backend_kind_debug_clone ... ok [INFO] [stdout] test backend::tests::backend_kind_display ... ok [INFO] [stdout] test backend::tests::device_info_summary ... ok [INFO] [stdout] test backend::tests::distance_metric_gpu_display ... ok [INFO] [stdout] test backend::tests::distance_metric_gpu_equality ... ok [INFO] [stdout] test buffer::tests::empty_buffer ... ok [INFO] [stdout] test buffer::tests::into_host_vec ... ok [INFO] [stdout] test buffer::tests::clone_independence ... ok [INFO] [stdout] test buffer::tests::device_only_returns_none ... ok [INFO] [stdout] test buffer::tests::summary_device_only ... ok [INFO] [stdout] test buffer::tests::summary_host_resident ... ok [INFO] [stdout] test buffer::tests::from_host_round_trip ... ok [INFO] [stdout] test cpu::tests::buffer_round_trip ... ok [INFO] [stdout] test cpu::tests::buffer_zeros ... ok [INFO] [stdout] test cpu::tests::matrix_multiply_identity ... ok [INFO] [stdout] test cpu::tests::pairwise_cosine ... ok [INFO] [stdout] test cpu::tests::batch_pairwise_abs_diff_sum ... ok [INFO] [stdout] test cpu::tests::elementwise_map_double ... ok [INFO] [stdout] test cpu::tests::device_info_kind ... ok [INFO] [stdout] test cpu::tests::pairwise_euclidean ... ok [INFO] [stdout] test cpu::tests::matrix_multiply_known ... ok [INFO] [stdout] test cpu::tests::reduce_max_empty ... ok [INFO] [stdout] test cpu::tests::reduce_min_max ... ok [INFO] [stdout] test cpu::tests::write_buffer_ok ... ok [INFO] [stdout] test kmer::tests::kmer_count_k1 ... ok [INFO] [stdout] test cpu::tests::reduce_sum_empty ... ok [INFO] [stdout] test kmer::tests::kmer_count_empty_error ... ok [INFO] [stdout] test kmer::tests::kmer_count_multiple_sequences ... ok [INFO] [stdout] test cpu::tests::reduce_sum_ok ... ok [INFO] [stdout] test minhash_gpu::tests::minhash_deterministic ... ok [INFO] [stdout] test cpu::tests::write_buffer_length_mismatch ... ok [INFO] [stdout] test minhash_gpu::tests::minhash_disjoint_jaccard_zero ... ok [INFO] [stdout] test minhash_gpu::tests::minhash_identical_jaccard_one ... ok [INFO] [stdout] test cpu::tests::pairwise_manhattan ... ok [INFO] [stdout] test cpu::tests::reduce_min_empty ... ok [INFO] [stdout] test kmer::tests::kmer_count_simple ... ok [INFO] [stdout] test kmer::tests::kmer_count_with_n ... ok [INFO] [stdout] test minhash_gpu::tests::minhash_sketch_size_respected ... ok [INFO] [stdout] test ops::tests::ops_batch_pairwise ... ok [INFO] [stdout] test minhash_gpu::tests::minhash_empty_error ... ok [INFO] [stdout] test ops::tests::ops_batch_z_score ... ok [INFO] [stdout] test ops::tests::ops_batch_z_score_dimension_mismatch ... ok [INFO] [stdout] test ops::tests::ops_batch_z_score_constant_column ... ok [INFO] [stdout] test ops::tests::ops_reduce_max ... ok [INFO] [stdout] test ops::tests::ops_reduce_mean ... ok [INFO] [stdout] test ops::tests::ops_pairwise_distance_matrix ... ok [INFO] [stdout] test ops::tests::ops_reduce_mean_empty ... ok [INFO] [stdout] test ops::tests::tiled_matches_full ... ok [INFO] [stdout] test smith_waterman::tests::sw_empty_error ... ok [INFO] [stdout] test ops::tests::tiled_single_tile ... ok [INFO] [stdout] test smith_waterman::tests::sw_blosum62_known ... ok [INFO] [stdout] test smith_waterman::tests::sw_identical_proteins ... ok [INFO] [stdout] test ops::tests::ops_reduce_sum ... ok [INFO] [stdout] test ops::tests::ops_matrix_multiply ... ok [INFO] [stdout] test ops::tests::ops_elementwise_map ... ok [INFO] [stdout] test smith_waterman::tests::sw_gap_penalty ... ok [INFO] [stdout] test smith_waterman::tests::sw_batch_multiple_pairs ... ok [INFO] [stdout] test ops::tests::ops_reduce_min ... ok [INFO] [stdout] test ops::tests::tiled_exact_division ... ok [INFO] [stdout] test tests::auto_backend_returns_cpu ... ok [INFO] [stdout] test tests::auto_backend_usable_through_trait ... ok [INFO] [stdout] test ops::tests::tiled_remainder ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 62 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/cyanea_io-a9a63a6c793109d8) [INFO] [stdout] [INFO] [stdout] running 237 tests [INFO] [stdout] test bam::tests::bam_file_not_found ... ok [INFO] [stdout] test abi::tests::abi_quality_values ... ok [INFO] [stdout] test abi::tests::abi_sample_name ... ok [INFO] [stdout] test bam::tests::bgzf_block_decompression ... ok [INFO] [stdout] test abi::tests::abi_invalid_magic ... ok [INFO] [stdout] test abi::tests::abi_valid_sequence ... ok [INFO] [stdout] test bam_ops::tests::alignment_stats_empty ... ok [INFO] [stdout] test bam_ops::tests::alignment_stats_error_by_cycle ... ok [INFO] [stdout] test bam::tests::bam_mate_fields_unmapped_mate ... ok [INFO] [stdout] test bam_ops::tests::coordinate_sort_unmapped_last ... ok [INFO] [stdout] test bam_ops::tests::alignment_stats_insert_size ... ok [INFO] [stdout] test bam_ops::tests::coordinate_sort_same_chrom_same_pos ... ok [INFO] [stdout] test bam_ops::tests::alignment_stats_error_by_cycle_no_eq_x ... ok [INFO] [stdout] test bam::tests::parse_minimal_bam ... ok [INFO] [stdout] test bam_ops::tests::fixmate_different_chroms ... ok [INFO] [stdout] test bam::tests::parse_bam_multiple_records ... ok [INFO] [stdout] test bam_ops::tests::coordinate_sort_basic ... ok [INFO] [stdout] test abi::tests::abi_trace_consistency ... ok [INFO] [stdout] test bam::tests::bgzf_eof_detection ... ok [INFO] [stdout] test bam_ops::tests::fixmate_unpaired_skipped ... ok [INFO] [stdout] test bam_ops::tests::flagstat_basic ... ok [INFO] [stdout] test bam::tests::bam_empty_file ... ok [INFO] [stdout] test bam_ops::tests::fixmate_basic ... ok [INFO] [stdout] test bam_ops::tests::flagstat_mate_different_chrom_low_mapq ... ok [INFO] [stdout] test bam::tests::bam_sequence_encoding ... ok [INFO] [stdout] test bam_ops::tests::flagstat_mate_different_chrom ... ok [INFO] [stdout] test bam::tests::bam_mate_fields_same_ref ... ok [INFO] [stdout] test bam::tests::bam_cigar_operations ... ok [INFO] [stdout] test bam_ops::tests::flagstat_paired ... ok [INFO] [stdout] test bam_ops::tests::flagstat_singleton ... ok [INFO] [stdout] test bam_ops::tests::idxstats_basic ... ok [INFO] [stdout] test bam_ops::tests::mark_duplicates_basic ... ok [INFO] [stdout] test bam_ops::tests::mark_duplicates_different_positions ... ok [INFO] [stdout] test bam_ops::tests::mark_duplicates_skips_secondary ... ok [INFO] [stdout] test bam_ops::tests::mark_duplicates_skips_unmapped ... ok [INFO] [stdout] test bam_ops::tests::mark_duplicates_three_at_same_pos ... ok [INFO] [stdout] test bam_ops::tests::merge_basic ... ok [INFO] [stdout] test bam_ops::tests::merge_multi_chrom ... ok [INFO] [stdout] test bam_ops::tests::queryname_sort_basic ... ok [INFO] [stdout] test bed::tests::test_bed_file_not_found ... ok [INFO] [stdout] test bed::tests::test_bed_empty_file ... ok [INFO] [stdout] test bed::tests::test_bed_stats ... ok [INFO] [stdout] test bed::tests::test_bed_too_few_columns ... ok [INFO] [stdout] test bedgraph::tests::malformed_bedgraph_returns_error ... ok [INFO] [stdout] test bed::tests::test_parse_bed6 ... ok [INFO] [stdout] test bed::tests::test_parse_bed_intervals ... ok [INFO] [stdout] test bedgraph::tests::parse_wiggle_variable_step ... ok [INFO] [stdout] test bed::tests::test_parse_bed_str ... ok [INFO] [stdout] test bed::tests::test_bed_invalid_start_end ... ok [INFO] [stdout] test bedgraph::tests::bedgraph_roundtrip ... ok [INFO] [stdout] test bedgraph::tests::parse_wiggle_fixed_step ... ok [INFO] [stdout] test bedpe::tests::test_bedpe_dot_name_score ... ok [INFO] [stdout] test bed::tests::test_bed_skip_headers ... ok [INFO] [stdout] test bedpe::tests::test_bedpe_file_not_found ... ok [INFO] [stdout] test bedpe::tests::test_bedpe_empty_file ... ok [INFO] [stdout] test bedpe::tests::test_bedpe_skip_headers ... ok [INFO] [stdout] test bedpe::tests::test_bedpe_stats_empty ... ok [INFO] [stdout] test bgzf::tests::virtual_offset_roundtrip ... ok [INFO] [stdout] test bedpe::tests::test_bedpe_stats ... ok [INFO] [stdout] test blast_xml::tests::blast_xml_malformed_error ... ok [INFO] [stdout] test blast_xml::tests::blast_xml_minimal_one_hit ... ok [INFO] [stdout] test blast_xml::tests::blast_xml_sequences ... ok [INFO] [stdout] test bedpe::tests::test_parse_bedpe10 ... ok [INFO] [stdout] test bgzf::tests::bgzf_eof_detection ... ok [INFO] [stdout] test bedpe::tests::test_bedpe_too_few_columns ... ok [INFO] [stdout] test blast_xml::tests::blast_xml_multi_hit ... ok [INFO] [stdout] test csv::tests::test_csv_file_not_found ... ok [INFO] [stdout] test bgzf::tests::decompress_all_multiple_blocks ... ok [INFO] [stdout] test fetch::tests::test_efetch_multi_id ... ok [INFO] [stdout] test bedpe::tests::test_bedpe_invalid_coordinates ... ok [INFO] [stdout] test fetch::tests::test_elink_url ... ok [INFO] [stdout] test fetch::tests::test_htsget_reads_no_region ... ok [INFO] [stdout] test fetch::tests::test_htsget_reads_with_region ... ok [INFO] [stdout] test csv::tests::test_csv_preview ... ok [INFO] [stdout] test fetch::tests::test_parse_efetch_fasta ... ok [INFO] [stdout] test fetch::tests::test_esearch_url ... ok [INFO] [stdout] test fetch::tests::test_parse_esearch_response ... ok [INFO] [stdout] test fetch::tests::test_refget_metadata_url ... ok [INFO] [stdout] test fetch::tests::test_refget_sequence_with_range ... ok [INFO] [stdout] test fetch::tests::test_uniprot_entry_url ... ok [INFO] [stdout] test fetch::tests::test_kegg_pathway_url ... ok [INFO] [stdout] test fetch::tests::test_uniprot_search_url ... ok [INFO] [stdout] test gfa::tests::malformed_gfa_returns_error ... ok [INFO] [stdout] test gfa::tests::gfa_stats_correct ... ok [INFO] [stdout] test gfa::tests::parse_paths_with_orientations ... ok [INFO] [stdout] test gfa::tests::parse_segments_and_links ... ok [INFO] [stdout] test gff::tests::test_gff3_url_decode ... ok [INFO] [stdout] test gff::tests::test_gff3_empty_file ... ok [INFO] [stdout] test gff::tests::test_gff3_file_not_found ... ok [INFO] [stdout] test gff::tests::test_gff3_stats ... ok [INFO] [stdout] test gff::tests::test_gff3_wrong_columns ... ok [INFO] [stdout] test gff::tests::test_multiple_transcripts ... ok [INFO] [stdout] test gff::tests::test_gff3_stops_at_fasta ... ok [INFO] [stdout] test gfa::tests::gfa_roundtrip ... ok [INFO] [stdout] test gff::tests::test_parse_gff3_str ... ok [INFO] [stdout] test pileup::tests::snp_tests::test_call_snps_below_threshold ... ok [INFO] [stdout] test pileup::tests::snp_tests::test_call_snps_min_depth ... ok [INFO] [stdout] test pileup::tests::snp_tests::test_call_snps_basic ... ok [INFO] [stdout] test gff::tests::test_parse_simple_gene ... ok [INFO] [stdout] test gff::tests::test_pseudogene_type ... ok [INFO] [stdout] test pileup::tests::test_cigar_eq_x_mapped_to_align ... ok [INFO] [stdout] test pileup::tests::test_cigar_invalid_char ... ok [INFO] [stdout] test pileup::tests::snp_tests::test_call_snps_variant_quality ... ok [INFO] [stdout] test pileup::tests::test_cigar_hard_soft_clip_combo ... ok [INFO] [stdout] test pileup::tests::test_cigar_complex ... ok [INFO] [stdout] test pileup::tests::test_cigar_star ... ok [INFO] [stdout] test pileup::tests::test_deletion_has_mapping_quality ... ok [INFO] [stdout] test pileup::tests::test_depth_stats_basic ... ok [INFO] [stdout] test pileup::tests::test_depth_stats_empty ... ok [INFO] [stdout] test pileup::tests::test_depth_stats_gaps ... ok [INFO] [stdout] test pileup::tests::test_depth_stats_median ... ok [INFO] [stdout] test pileup::tests::test_insertion_evidence_from_cigar ... ok [INFO] [stdout] test pileup::tests::test_cigar_simple_match ... ok [INFO] [stdout] test pileup::tests::test_insertion_multiple_reads ... ok [INFO] [stdout] test pileup::tests::test_mapping_qualities_recorded ... ok [INFO] [stdout] test pileup::tests::test_mpileup_basic_format ... ok [INFO] [stdout] test pileup::tests::test_mpileup_match_dot_comma ... ok [INFO] [stdout] test pileup::tests::test_mpileup_mismatch_case ... ok [INFO] [stdout] test pileup::tests::test_pileup_empty_records ... ok [INFO] [stdout] test pileup::tests::test_pileup_hard_clip ... ok [INFO] [stdout] test pileup::tests::test_pileup_deletion ... ok [INFO] [stdout] test pileup::tests::test_pileup_insertion ... ok [INFO] [stdout] test pileup::tests::test_pileup_multi_reference ... ok [INFO] [stdout] test pileup::tests::test_pileup_quality_star ... ok [INFO] [stdout] test pileup::tests::test_pileup_region_filters ... ok [INFO] [stdout] test pileup::tests::test_pileup_single_read ... ok [INFO] [stdout] test pileup::tests::test_pileup_n_splice ... ok [INFO] [stdout] test pileup::tests::test_pileup_reverse_strand_bases ... ok [INFO] [stdout] test pileup::tests::test_pileup_two_overlapping_reads ... ok [INFO] [stdout] test pileup::tests::test_pileup_with_reference ... ok [INFO] [stdout] test pileup::tests::test_pileup_soft_clip ... ok [INFO] [stdout] test pileup::tests::test_pileup_unmapped_skipped ... ok [INFO] [stdout] test sam::tests::test_filter_proper_pairs ... ok [INFO] [stdout] test pileup::tests::test_pileup_star_cigar_skipped ... ok [INFO] [stdout] test sam::tests::test_flag_helpers ... ok [INFO] [stdout] test sam::tests::test_flag_second_in_pair ... ok [INFO] [stdout] test sam::tests::test_pair_sam_records_basic ... ok [INFO] [stdout] test sam::tests::test_paired_sam_stats ... ok [INFO] [stdout] test sam::tests::test_parse_basic_sam ... ok [INFO] [stdout] test sam::tests::test_pair_sam_records_excludes_secondary ... ok [INFO] [stdout] test sam::tests::test_rnext_different_chrom ... ok [INFO] [stdout] test sam::tests::test_flag_secondary_supplementary ... ok [INFO] [stdout] test sam::tests::test_rnext_star_unmapped_mate ... ok [INFO] [stdout] test sam::tests::test_sam_all_mapped ... ok [INFO] [stdout] test sam::tests::test_paired_sam_stats_singleton ... ok [INFO] [stdout] test sam::tests::test_parse_rnext_pnext_tlen ... ok [INFO] [stdout] test sam::tests::test_pair_sam_records_singletons ... ok [INFO] [stdout] test sam::tests::test_sam_empty_file ... ok [INFO] [stdout] test sam::tests::test_sam_header_only ... ok [INFO] [stdout] test sam::tests::test_sam_invalid_mapq ... ok [INFO] [stdout] test sam::tests::test_sam_invalid_pos ... ok [INFO] [stdout] test sam::tests::test_sam_mapq_255 ... ok [INFO] [stdout] test sam::tests::test_sam_quality_string ... ok [INFO] [stdout] test sam::tests::test_sam_file_not_found ... ok [INFO] [stdout] test sam::tests::test_sam_invalid_flag ... ok [INFO] [stdout] test sam::tests::test_sam_paired_end_flags ... ok [INFO] [stdout] test sam::tests::test_sam_stats_basic ... ok [INFO] [stdout] test sam::tests::test_sam_stats_empty ... ok [INFO] [stdout] test sam::tests::test_sam_seq_len_star ... ok [INFO] [stdout] test sam::tests::test_sam_stats_from_path ... ok [INFO] [stdout] test sam::tests::test_sam_stats_mapq_distribution_sorted ... ok [INFO] [stdout] test sam::tests::test_sam_too_few_columns ... ok [INFO] [stdout] test vcf::tests::test_parse_basic_vcf ... ok [INFO] [stdout] test vcf::tests::test_parse_vcf_str ... ok [INFO] [stdout] test vcf::tests::test_vcf_file_not_found ... ok [INFO] [stdout] test vcf::tests::test_vcf_missing_columns ... ok [INFO] [stdout] test vcf::tests::test_vcf_stats ... ok [INFO] [stdout] test vcf::tests::test_vcf_empty_file ... ok [INFO] [stdout] test vcf::tests::test_write_vcf_header ... ok [INFO] [stdout] test vcf::tests::test_write_vcf_multi_allelic ... ok [INFO] [stdout] test vcf::tests::test_write_vcf_string_basic ... ok [INFO] [stdout] test vcf_header::tests::build_empty_header ... ok [INFO] [stdout] test vcf_header::tests::build_header_no_samples_no_format ... ok [INFO] [stdout] test vcf_header::tests::build_header_with_contigs ... ok [INFO] [stdout] test vcf_header::tests::build_header_with_filters ... ok [INFO] [stdout] test vcf_header::tests::build_header_with_format ... ok [INFO] [stdout] test vcf_header::tests::build_header_with_info ... ok [INFO] [stdout] test sam::tests::test_sam_skip_blank_lines ... ok [INFO] [stdout] test vcf_header::tests::build_header_with_samples ... ok [INFO] [stdout] test vcf_header::tests::contig_line_without_length ... ok [INFO] [stdout] test vcf_header::tests::parse_extra_lines_preserved ... ok [INFO] [stdout] test vcf_header::tests::parse_header_contigs ... ok [INFO] [stdout] test vcf_header::tests::parse_multiple_samples ... ok [INFO] [stdout] test vcf_header::tests::parse_header_info_format_filter ... ok [INFO] [stdout] test vcf::tests::test_write_vcf_file_roundtrip ... ok [INFO] [stdout] test sam::tests::test_sam_with_optional_fields ... ok [INFO] [stdout] test vcf_header::tests::parse_description_with_comma ... ok [INFO] [stdout] test vcf_header::tests::parse_roundtrip ... ok [INFO] [stdout] test vcf_ops::tests::annotate_multiple_sources ... ok [INFO] [stdout] test vcf_header::tests::parse_empty_header ... ok [INFO] [stdout] test vcf_ops::tests::annotate_no_match ... ok [INFO] [stdout] test vcf_ops::tests::annotate_variant_ids_basic ... ok [INFO] [stdout] test vcf_ops::tests::concordance_basic ... ok [INFO] [stdout] test vcf_ops::tests::detailed_stats_empty ... ok [INFO] [stdout] test vcf_ops::tests::concordance_identical ... ok [INFO] [stdout] test vcf_ops::tests::complement_basic ... ok [INFO] [stdout] test vcf_ops::tests::detailed_stats_indel_sizes ... ok [INFO] [stdout] test vcf_ops::tests::detailed_stats_per_chrom ... ok [INFO] [stdout] test vcf_ops::tests::detailed_stats_quality_histogram ... ok [INFO] [stdout] test vcf_ops::tests::filter_and ... ok [INFO] [stdout] test vcf_ops::tests::filter_chrom ... ok [INFO] [stdout] test bam::tests::parse_bam_unmapped_read ... ok [INFO] [stdout] test vcf_ops::tests::annotate_with_rsid ... ok [INFO] [stdout] test vcf_ops::tests::detailed_stats_basic ... ok [INFO] [stdout] test vcf_ops::tests::filter_invalid_expr ... ok [INFO] [stdout] test vcf_ops::tests::filter_not ... ok [INFO] [stdout] test vcf_ops::tests::filter_parentheses ... ok [INFO] [stdout] test vcf_ops::tests::filter_or ... ok [INFO] [stdout] test vcf_ops::tests::filter_qual_ge ... ok [INFO] [stdout] test vcf_ops::tests::filter_type_indel ... ok [INFO] [stdout] test vcf_ops::tests::filter_variants_vec ... ok [INFO] [stdout] test vcf_ops::tests::filter_pass ... ok [INFO] [stdout] test vcf_ops::tests::filter_type_snv ... ok [INFO] [stdout] test vcf_ops::tests::intersection_basic ... ok [INFO] [stdout] test vcf_ops::tests::filter_qual_gt ... ok [INFO] [stdout] test vcf_ops::tests::join_biallelic_basic ... ok [INFO] [stdout] test vcf_ops::tests::merge_non_overlapping ... ok [INFO] [stdout] test vcf_ops::tests::merge_overlapping ... ok [INFO] [stdout] test vcf_ops::tests::normalize_no_change_for_snv ... ok [INFO] [stdout] test vcf_ops::tests::normalize_trim_prefix ... ok [INFO] [stdout] test vcf_ops::tests::normalize_trim_suffix ... ok [INFO] [stdout] test vcf_ops::tests::split_join_roundtrip ... ok [INFO] [stdout] test vcf_ops::tests::split_multiallelic_multi ... ok [INFO] [stdout] test vcf_ops::tests::split_multiallelic_single ... ok [INFO] [stdout] test vcf_ops::tests::join_biallelic_empty ... ok [INFO] [stdout] test bam_ops::tests::alignment_stats_gc_content ... ok [INFO] [stdout] test csv::tests::test_csv_parsing ... ok [INFO] [stdout] test vcf_ops::tests::concordance_disjoint ... ok [INFO] [stdout] test bed::tests::test_parse_bed3 ... ok [INFO] [stdout] test bedpe::tests::test_parse_bedpe6 ... ok [INFO] [stdout] test bam::tests::bam_stats_basic ... ok [INFO] [stdout] test bgzf::tests::bgzf_block_roundtrip ... ok [INFO] [stdout] test bedgraph::tests::parse_bedgraph_with_track_header ... ok [INFO] [stdout] test vcf_ops::tests::join_biallelic_different_pos ... ok [INFO] [stdout] test vcf_ops::tests::detailed_stats_insertions ... ok [INFO] [stdout] test sam::tests::test_sam_all_unmapped ... ok [INFO] [stdout] test blast_xml::tests::blast_xml_hsp_fields ... ok [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/cyanea_ml-6fc0a75c42d7b198) [INFO] [stdout] [INFO] [stdout] test result: ok. 237 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.08s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 269 tests [INFO] [stdout] test cluster::tests::dbscan_empty_data ... ok [INFO] [stdout] test cluster::tests::kmeans_empty_data ... ok [INFO] [stdout] test cluster::tests::hierarchical_too_many_clusters ... ok [INFO] [stdout] test cluster::tests::dbscan_summary ... ok [INFO] [stdout] test cluster::tests::dbscan_one_cluster ... ok [INFO] [stdout] test cluster::tests::kmeans_convergence ... ok [INFO] [stdout] test cluster::tests::hierarchical_average_linkage ... ok [INFO] [stdout] test cluster::tests::hierarchical_single_linkage ... ok [INFO] [stdout] test cluster::tests::hierarchical_summary ... ok [INFO] [stdout] test cluster::tests::dbscan_all_noise ... ok [INFO] [stdout] test cluster::tests::kmeans_summary ... ok [INFO] [stdout] test cluster::tests::hierarchical_single_cluster ... ok [INFO] [stdout] test cluster::tests::dbscan_two_clusters ... ok [INFO] [stdout] test cluster::tests::hierarchical_complete_linkage ... ok [INFO] [stdout] test cluster::tests::hierarchical_merge_history ... ok [INFO] [stdout] test cluster::tests::kmeans_single_cluster ... ok [INFO] [stdout] test cluster::tests::kmeans_too_many_clusters ... ok [INFO] [stdout] test cluster::tests::kmeans_two_clusters ... ok [INFO] [stdout] test cluster::tests::ward_correct_number_of_clusters ... ok [INFO] [stdout] test cluster::tests::ward_matches_naive_on_small_data ... ok [INFO] [stdout] test cluster::tests::ward_two_clusters ... ok [INFO] [stdout] test cross_validation::tests::kfold_k_gt_n_error ... ok [INFO] [stdout] test cross_validation::tests::kfold_uneven_split ... ok [INFO] [stdout] test cross_validation::tests::kfold_sizes_correct ... ok [INFO] [stdout] test cross_validation::tests::loo_fold_count_and_sizes ... ok [INFO] [stdout] test cross_validation::tests::stratified_class_proportions ... ok [INFO] [stdout] test cross_validation::tests::stratified_all_classes_in_each_fold ... ok [INFO] [stdout] test cross_validation::tests::stratified_covers_all_samples ... ok [INFO] [stdout] test cross_validation::tests::stratified_deterministic_with_seed ... ok [INFO] [stdout] test cluster::tests::ward_single_cluster ... ok [INFO] [stdout] test cross_validation::tests::kfold_no_overlap ... ok [INFO] [stdout] test cross_validation::tests::integration_decision_tree_kfold ... ok [INFO] [stdout] test cross_validation::tests::loo_trivially_separable ... ok [INFO] [stdout] test distance::tests::cosine_distance_known ... ok [INFO] [stdout] test cluster::tests::ward_merge_history_length ... ok [INFO] [stdout] test cluster::tests::ward_summary ... ok [INFO] [stdout] test distance::tests::cosine_similarity_opposite ... ok [INFO] [stdout] test distance::tests::euclidean_length_mismatch ... ok [INFO] [stdout] test distance::tests::hamming_all_different ... ok [INFO] [stdout] test distance::tests::cosine_similarity_orthogonal ... ok [INFO] [stdout] test distance::tests::hamming_identical ... ok [INFO] [stdout] test distance::tests::hamming_empty_error ... ok [INFO] [stdout] test distance::tests::cosine_similarity_zero_vector ... ok [INFO] [stdout] test distance::tests::distance_matrix_from_points ... ok [INFO] [stdout] test distance::tests::distance_matrix_summary ... ok [INFO] [stdout] test distance::tests::distance_matrix_too_few_points ... ok [INFO] [stdout] test distance::tests::euclidean_empty_error ... ok [INFO] [stdout] test distance::tests::euclidean_identical ... ok [INFO] [stdout] test distance::tests::euclidean_known ... ok [INFO] [stdout] test distance::tests::cosine_similarity_identical ... ok [INFO] [stdout] test distance::tests::hamming_known ... ok [INFO] [stdout] test distance::tests::manhattan_known ... ok [INFO] [stdout] test distance::tests::pairwise_distances_alias ... ok [INFO] [stdout] test embedding::tests::composition_vector_dna ... ok [INFO] [stdout] test embedding::tests::batch_embed_basic ... ok [INFO] [stdout] test embedding::tests::composition_vector_protein ... ok [INFO] [stdout] test embedding::tests::kmer_embedding_basic ... ok [INFO] [stdout] test embedding::tests::kmer_embedding_normalized ... ok [INFO] [stdout] test encoding::tests::label_encode_dna ... ok [INFO] [stdout] test embedding::tests::pairwise_distances_basic ... ok [INFO] [stdout] test encoding::tests::label_encode_protein ... ok [INFO] [stdout] test embedding::tests::pairwise_distances_too_few ... ok [INFO] [stdout] test embedding::tests::kmer_embedding_empty_error ... ok [INFO] [stdout] test encoding::tests::one_hot_unknown_char ... ok [INFO] [stdout] test encoding::tests::protein_symbols ... ok [INFO] [stdout] test encoding::tests::rna_symbols ... ok [INFO] [stdout] test evaluate::tests::length_mismatch_error ... ok [INFO] [stdout] test evaluate::tests::noise_excluded ... ok [INFO] [stdout] test evaluate::tests::perfect_separation ... ok [INFO] [stdout] test evaluate::tests::single_cluster_error ... ok [INFO] [stdout] test encoding::tests::dna_symbols ... ok [INFO] [stdout] test evaluate::tests::too_few_samples_error ... ok [INFO] [stdout] test evaluate::tests::value_range ... ok [INFO] [stdout] test encoding::tests::one_hot_dna ... ok [INFO] [stdout] test encoding::tests::one_hot_empty ... ok [INFO] [stdout] test encoding::tests::label_encode_unknown ... ok [INFO] [stdout] test encoding::tests::one_hot_lowercase ... ok [INFO] [stdout] test feature_selection::tests::discretize_constant_column ... ok [INFO] [stdout] test feature_selection::tests::discretize_equal_width_bins ... ok [INFO] [stdout] test feature_selection::tests::lasso_empty_data_error ... ok [INFO] [stdout] test feature_selection::tests::lasso_predict_accuracy ... ok [INFO] [stdout] test feature_selection::tests::lasso_targets_mismatch_error ... ok [INFO] [stdout] test feature_selection::tests::lasso_zero_alpha_keeps_all ... ok [INFO] [stdout] test feature_selection::tests::mi_informative_feature_scores_high ... ok [INFO] [stdout] test feature_selection::tests::mi_multiclass ... ok [INFO] [stdout] test feature_selection::tests::lasso_zero_max_iter_error ... ok [INFO] [stdout] test feature_selection::tests::mi_constant_feature_zero ... ok [INFO] [stdout] test feature_selection::tests::mi_top_k_sorted_by_index ... ok [INFO] [stdout] test feature_selection::tests::mi_labels_mismatch_error ... ok [INFO] [stdout] test feature_selection::tests::mi_top_k_limits_count ... ok [INFO] [stdout] test feature_selection::tests::integration_rfe_with_random_forest ... ok [INFO] [stdout] test feature_selection::tests::lasso_transform_shape ... ok [INFO] [stdout] test feature_selection::tests::lasso_multivariate_selection ... ok [INFO] [stdout] test feature_selection::tests::lasso_negative_alpha_error ... ok [INFO] [stdout] test feature_selection::tests::lasso_selects_informative_features ... ok [INFO] [stdout] test feature_selection::tests::mi_zero_bins_error ... ok [INFO] [stdout] test feature_selection::tests::rfe_bad_importance_length_error ... ok [INFO] [stdout] test feature_selection::tests::rfe_n_select_exceeds_error ... ok [INFO] [stdout] test feature_selection::tests::rfe_rankings_correct ... ok [INFO] [stdout] test feature_selection::tests::integration_variance_then_mi ... ok [INFO] [stdout] test feature_selection::tests::soft_threshold_negative ... ok [INFO] [stdout] test feature_selection::tests::soft_threshold_positive ... ok [INFO] [stdout] test feature_selection::tests::lasso_convergence ... ok [INFO] [stdout] test feature_selection::tests::soft_threshold_within_band ... ok [INFO] [stdout] test feature_selection::tests::mi_top_k_zero_error ... ok [INFO] [stdout] test feature_selection::tests::variance_dimension_mismatch_error ... ok [INFO] [stdout] test feature_selection::tests::rfe_n_select_equals_n_features ... ok [INFO] [stdout] test feature_selection::tests::variance_higher_threshold_removes_more ... ok [INFO] [stdout] test feature_selection::tests::rfe_n_select_zero_error ... ok [INFO] [stdout] test feature_selection::tests::variance_empty_data_error ... ok [INFO] [stdout] test feature_selection::tests::rfe_transform_works ... ok [INFO] [stdout] test feature_selection::tests::mi_selects_nonzero_features ... ok [INFO] [stdout] test feature_selection::tests::rfe_selects_informative_features ... ok [INFO] [stdout] test feature_selection::tests::lasso_high_alpha_eliminates_all ... ok [INFO] [stdout] test feature_selection::tests::variance_removes_constant_features ... ok [INFO] [stdout] test feature_selection::tests::variance_single_sample ... ok [INFO] [stdout] test forest::tests::config_options_work ... ok [INFO] [stdout] test forest::tests::empty_data_error ... ok [INFO] [stdout] test forest::tests::binary_classification ... ok [INFO] [stdout] test forest::tests::zero_trees_error ... ok [INFO] [stdout] test gbdt::tests::binary_batch_consistency ... ok [INFO] [stdout] test gbdt::tests::binary_early_stopping ... ok [INFO] [stdout] test gbdt::tests::binary_feature_importance_sums_to_one ... ok [INFO] [stdout] test gbdt::tests::binary_is_classification_checks ... ok [INFO] [stdout] test forest::tests::feature_importance_with_informative_feature ... ok [INFO] [stdout] test gbdt::tests::binary_predict_class_proba_consistency ... ok [INFO] [stdout] test gbdt::tests::binary_proba_sums_to_one ... ok [INFO] [stdout] test gbdt::tests::binary_single_class_edge ... ok [INFO] [stdout] test feature_selection::tests::variance_transform_shape ... ok [INFO] [stdout] test feature_selection::tests::variance_threshold_zero_keeps_all_varying ... ok [INFO] [stdout] test gbdt::tests::error_dimension_mismatch ... ok [INFO] [stdout] test gbdt::tests::error_empty_data ... ok [INFO] [stdout] test forest::tests::deterministic_with_seed ... ok [INFO] [stdout] test gbdt::tests::error_invalid_config ... ok [INFO] [stdout] test gbdt::tests::binary_linearly_separable ... ok [INFO] [stdout] test gbdt::tests::error_labels_length_mismatch ... ok [INFO] [stdout] test gbdt::tests::multiclass_proba_batch_consistency ... ok [INFO] [stdout] test gbdt::tests::multiclass_proba_sums_to_one ... ok [INFO] [stdout] test gbdt::tests::multiclass_class_matches_argmax_proba ... ok [INFO] [stdout] test gbdt::tests::regression_constant_target ... ok [INFO] [stdout] test forest::tests::single_sample_prediction ... ok [INFO] [stdout] test gbdt::tests::regression_predict_batch_consistency ... ok [INFO] [stdout] test gbdt::tests::regression_learning_rate_effect ... ok [INFO] [stdout] test gbdt::tests::regression_early_stopping ... ok [INFO] [stdout] test gbdt::tests::multiclass_feature_importance_length ... ok [INFO] [stdout] test gbdt::tests::deterministic_with_same_seed ... ok [INFO] [stdout] test forest::tests::feature_importance_sums_to_one ... ok [INFO] [stdout] test gbdt::tests::permutation_importance_regression_informative ... ok [INFO] [stdout] test hmm::tests::baum_welch_improves_likelihood_monotonically ... ok [INFO] [stdout] test feature_selection::tests::variance_negative_threshold_error ... ok [INFO] [stdout] test hmm::tests::baum_welch_converges ... ok [INFO] [stdout] test gbdt::tests::permutation_importance_classification_informative ... ok [INFO] [stdout] test gbdt::tests::regression_single_sample ... ok [INFO] [stdout] test gbdt::tests::regression_feature_importance_informative ... ok [INFO] [stdout] test hmm::tests::casino_viterbi_detects_loaded_runs ... ok [INFO] [stdout] test hmm::tests::error_on_empty_observations ... ok [INFO] [stdout] test hmm::tests::forward_log_likelihood_is_finite_and_negative ... ok [INFO] [stdout] test hmm::tests::viterbi_path_length_equals_observations ... ok [INFO] [stdout] test inference::tests::knn_fit_errors ... ok [INFO] [stdout] test inference::tests::knn_regress_basic ... ok [INFO] [stdout] test inference::tests::knn_summary ... ok [INFO] [stdout] test inference::tests::linreg_multivariate ... ok [INFO] [stdout] test inference::tests::linreg_predict_batch ... ok [INFO] [stdout] test hmm::tests::error_on_dimension_mismatch ... ok [INFO] [stdout] test hmm::tests::error_on_invalid_symbol ... ok [INFO] [stdout] test inference::tests::knn_neighbors ... ok [INFO] [stdout] test inference::tests::linreg_perfect_fit ... ok [INFO] [stdout] test inference::tests::linreg_predict ... ok [INFO] [stdout] test inference::tests::linreg_summary ... ok [INFO] [stdout] test kmer::tests::count_sequence_repeated ... ok [INFO] [stdout] test kmer::tests::count_normalized_sums_to_one ... ok [INFO] [stdout] test kmer::tests::counter_new_invalid ... ok [INFO] [stdout] test kmer::tests::counter_new_valid ... ok [INFO] [stdout] test kmer::tests::frequency_vector_length ... ok [INFO] [stdout] test kmer::tests::iter_pairs ... ok [INFO] [stdout] test kmer::tests::frequency_vector_values ... ok [INFO] [stdout] test hmm::tests::round_trip_generate_decode ... ok [INFO] [stdout] test hmm::tests::viterbi_path_values_are_valid_states ... ok [INFO] [stdout] test inference::tests::knn_classify_basic ... ok [INFO] [stdout] test gbdt::tests::regression_subsample ... ok [INFO] [stdout] test kmer::tests::count_sequence_basic ... ok [INFO] [stdout] test kmer::tests::count_sequence_short ... ok [INFO] [stdout] test kmer::tests::count_sequence_lowercase ... ok [INFO] [stdout] test kmer::tests::summary_format ... ok [INFO] [stdout] test metrics::tests::cm_empty_error ... ok [INFO] [stdout] test metrics::tests::cm_length_mismatch_error ... ok [INFO] [stdout] test metrics::tests::cm_perfect_accuracy ... ok [INFO] [stdout] test metrics::tests::cm_specificity ... ok [INFO] [stdout] test metrics::tests::f1_binary_known ... ok [INFO] [stdout] test metrics::tests::f1_macro_multiclass ... ok [INFO] [stdout] test metrics::tests::mcc_inverse ... ok [INFO] [stdout] test metrics::tests::f1_weighted_multiclass ... ok [INFO] [stdout] test metrics::tests::mcc_zero_denominator ... ok [INFO] [stdout] test metrics::tests::accuracy_known ... ok [INFO] [stdout] test hmm::tests::log_sum_exp_numerical_stability ... ok [INFO] [stdout] test metrics::tests::cm_binary_basic ... ok [INFO] [stdout] test metrics::tests::cm_half_accuracy ... ok [INFO] [stdout] test metrics::tests::cm_multiclass_3class ... ok [INFO] [stdout] test metrics::tests::cm_precision_recall_f1 ... ok [INFO] [stdout] test metrics::tests::pr_all_positive_edge ... ok [INFO] [stdout] test metrics::tests::mcc_known_values ... ok [INFO] [stdout] test metrics::tests::mcc_perfect ... ok [INFO] [stdout] test metrics::tests::pr_auc_matches_curve ... ok [INFO] [stdout] test gbdt::tests::regression_linear_function ... ok [INFO] [stdout] test metrics::tests::pr_no_positives_error ... ok [INFO] [stdout] test metrics::tests::pr_perfect_auc ... ok [INFO] [stdout] test metrics::tests::roc_all_same_label_error ... ok [INFO] [stdout] test metrics::tests::roc_empty_error ... ok [INFO] [stdout] test metrics::tests::roc_endpoints ... ok [INFO] [stdout] test metrics::tests::roc_known_curve_points ... ok [INFO] [stdout] test metrics::tests::roc_perfect_auc ... ok [INFO] [stdout] test metrics::tests::pr_known_curve_points ... ok [INFO] [stdout] test metrics::tests::roc_random_auc ... ok [INFO] [stdout] test normalize::tests::column_validate_not_divisible ... ok [INFO] [stdout] test normalize::tests::column_validate_bad_ncols ... ok [INFO] [stdout] test normalize::tests::l2_normalize_empty_error ... ok [INFO] [stdout] test normalize::tests::l2_normalize_zero_vector ... ok [INFO] [stdout] test normalize::tests::min_max_basic ... ok [INFO] [stdout] test normalize::tests::min_max_columns_basic ... ok [INFO] [stdout] test normalize::tests::min_max_constant ... ok [INFO] [stdout] test normalize::tests::min_max_empty_error ... ok [INFO] [stdout] test normalize::tests::z_score_basic ... ok [INFO] [stdout] test normalize::tests::z_score_columns_basic ... ok [INFO] [stdout] test normalize::tests::z_score_constant ... ok [INFO] [stdout] test normalize::tests::z_score_empty_error ... ok [INFO] [stdout] test normalize::tests::l2_normalize_basic ... ok [INFO] [stdout] test normalize::tests::l2_normalize_columns_basic ... ok [INFO] [stdout] test inference::tests::linreg_fit_errors ... ok [INFO] [stdout] test forest::tests::fit_and_predict_iris_like ... ok [INFO] [stdout] test reduction::tests::pca_empty_error ... ok [INFO] [stdout] test reduction::tests::pca_mean_centering ... ok [INFO] [stdout] test reduction::tests::pca_variance_ratio_sums_leq_one ... ok [INFO] [stdout] test reduction::tests::tsne_empty_error ... ok [INFO] [stdout] test reduction::tests::tsne_perplexity_too_high ... ok [INFO] [stdout] test tree::tests::dimension_mismatch_error ... ok [INFO] [stdout] test tree::tests::empty_data_error ... ok [INFO] [stdout] test tree::tests::fit_linearly_separable ... ok [INFO] [stdout] test tree::tests::gini_pure ... ok [INFO] [stdout] test tree::tests::gini_half ... ok [INFO] [stdout] test hmm::tests::forward_backward_log_likelihood_match ... ok [INFO] [stdout] test tree::tests::labels_length_mismatch ... ok [INFO] [stdout] test tree::tests::pure_node_stops ... ok [INFO] [stdout] test tree::tests::multiclass ... ok [INFO] [stdout] test tree::tests::single_sample ... ok [INFO] [stdout] test gbdt::tests::multiclass_three_clusters ... ok [INFO] [stdout] test reduction::tests::pca_basic_2d ... ok [INFO] [stdout] test tree::tests::predict_batch_works ... ok [INFO] [stdout] test reduction::tests::pca_dimension_mismatch ... ok [INFO] [stdout] test tree::tests::max_depth_zero ... ok [INFO] [stdout] test umap::tests::fit_ab_custom ... ok [INFO] [stdout] test reduction::tests::pca_one_component ... ok [INFO] [stdout] test reduction::tests::pca_summary ... ok [INFO] [stdout] test umap::tests::fit_ab_default ... ok [INFO] [stdout] test umap::tests::smooth_knn_convergence ... ok [INFO] [stdout] test umap::tests::symmetrize_weights ... ok [INFO] [stdout] test reduction::tests::tsne_summary ... ok [INFO] [stdout] test umap::tests::umap_n_neighbors_too_small ... ok [INFO] [stdout] test umap::tests::umap_n_neighbors_too_large ... ok [INFO] [stdout] test umap::tests::umap_dimension_mismatch ... ok [INFO] [stdout] test umap::tests::umap_random_init ... ok [INFO] [stdout] test umap::tests::umap_3d_output ... ok [INFO] [stdout] test umap::tests::umap_pca_init ... ok [INFO] [stdout] test umap::tests::umap_custom_metric ... ok [INFO] [stdout] test reduction::tests::tsne_3d_output ... ok [INFO] [stdout] test umap::tests::umap_summary ... ok [INFO] [stdout] test umap::tests::umap_deterministic ... ok [INFO] [stdout] test reduction::tests::tsne_basic_clusters ... ok [INFO] [stdout] test umap::tests::umap_empty_error ... ok [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/cyanea_omics-e6c6929d5354c834) [INFO] [stdout] test umap::tests::umap_basic_clusters ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 269 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 434 tests [INFO] [stdout] test annotation::tests::test_annotated ... ok [INFO] [stdout] test annotation::tests::test_gene_len ... ok [INFO] [stdout] test annotation::tests::test_gene_to_interval ... ok [INFO] [stdout] test annotation::tests::test_gene_type_display ... ok [INFO] [stdout] test annotation::tests::test_summary ... ok [INFO] [stdout] test annotation::tests::test_transcript_exonic_length ... ok [INFO] [stdout] test annotation::tests::test_transcript_n_exons ... ok [INFO] [stdout] test annotation::tests::test_exon_len ... ok [INFO] [stdout] test annotation::tests::test_gene_n_transcripts ... ok [INFO] [stdout] test annotation::tests::test_transcript_to_interval ... ok [INFO] [stdout] test annotation::tests::test_gene_is_protein_coding ... ok [INFO] [stdout] test cnv::tests::baf_normal_diploid ... ok [INFO] [stdout] test cnv::tests::cn_estimation_from_log2_ratio ... ok [INFO] [stdout] test cnv::tests::cbs_min_probes_respected ... ok [INFO] [stdout] test cnv::tests::cnv_merge_max_gap ... ok [INFO] [stdout] test coverage::tests::from_depths_basic ... ok [INFO] [stdout] test cnv::tests::cbs_constant_data ... ok [INFO] [stdout] test cnv::tests::sv_inversion ... ok [INFO] [stdout] test cnv::tests::cnv_merge_adjacent ... ok [INFO] [stdout] test coverage::tests::from_depths_empty ... ok [INFO] [stdout] test coverage::tests::heavily_overlapping ... ok [INFO] [stdout] test cnv::tests::sv_deletion_cluster ... ok [INFO] [stdout] test coverage::tests::interval_coverage_to_vec ... ok [INFO] [stdout] test coverage::tests::mean_coverage_value ... ok [INFO] [stdout] test coverage::tests::overlapping_intervals ... ok [INFO] [stdout] test coverage::tests::round_trip ... ok [INFO] [stdout] test coverage::tests::uniform_depth ... ok [INFO] [stdout] test coverage::tests::zero_length ... ok [INFO] [stdout] test expr::tests::test_as_slice ... ok [INFO] [stdout] test expr::tests::test_column_mean ... ok [INFO] [stdout] test expr::tests::test_construction ... ok [INFO] [stdout] test coverage::tests::single_interval ... ok [INFO] [stdout] test coverage::tests::intervals_beyond_chrom_length ... ok [INFO] [stdout] test expr::tests::test_dimension_mismatch ... ok [INFO] [stdout] test expr::tests::test_column ... ok [INFO] [stdout] test expr::tests::test_empty_matrix ... ok [INFO] [stdout] test expr::tests::test_filter_features ... ok [INFO] [stdout] test expr::tests::test_filter_samples ... ok [INFO] [stdout] test expr::tests::test_get_set ... ok [INFO] [stdout] test expr::tests::test_row ... ok [INFO] [stdout] test expr::tests::test_row_mean ... ok [INFO] [stdout] test expr::tests::test_sample_names ... ok [INFO] [stdout] test expr::tests::test_summary ... ok [INFO] [stdout] test expr::tests::test_log_transform ... ok [INFO] [stdout] test genome_arithmetic::tests::test_closest_downstream ... ok [INFO] [stdout] test expr::tests::test_transpose ... ok [INFO] [stdout] test expr::tests::test_row_length_mismatch ... ok [INFO] [stdout] test expr::tests::test_zeros ... ok [INFO] [stdout] test genome_arithmetic::tests::test_closest_equidistant ... ok [INFO] [stdout] test genome_arithmetic::tests::test_closest_single_b ... ok [INFO] [stdout] test genome_arithmetic::tests::test_closest_upstream ... ok [INFO] [stdout] test genome_arithmetic::tests::test_complement_basic ... ok [INFO] [stdout] test genome_arithmetic::tests::test_closest_no_b_on_chrom ... ok [INFO] [stdout] test coverage::tests::empty_coverage ... ok [INFO] [stdout] test genome_arithmetic::tests::test_complement_full_coverage ... ok [INFO] [stdout] test genome_arithmetic::tests::test_complement_chrom_not_in_genome ... ok [INFO] [stdout] test cnv::tests::sv_translocation ... ok [INFO] [stdout] test genome_arithmetic::tests::test_complement_chrom_with_no_intervals ... ok [INFO] [stdout] test cnv::tests::cnv_merge_different_cn_not_merged ... ok [INFO] [stdout] test genome_arithmetic::tests::test_complement_empty_input ... ok [INFO] [stdout] test genome_arithmetic::tests::test_closest_overlapping ... ok [INFO] [stdout] test genome_arithmetic::tests::test_intersect_empty_input ... ok [INFO] [stdout] test expr::tests::test_feature_names ... ok [INFO] [stdout] test genome_arithmetic::tests::test_complement_of_complement_equals_merge ... ok [INFO] [stdout] test genome_arithmetic::tests::test_intersect_identical ... ok [INFO] [stdout] test genome_arithmetic::tests::test_intersect_no_overlap ... ok [INFO] [stdout] test genome_arithmetic::tests::test_intersect_basic ... ok [INFO] [stdout] test coverage::tests::get_out_of_range ... ok [INFO] [stdout] test genome_arithmetic::tests::test_intersect_multi_chrom ... ok [INFO] [stdout] test genome_arithmetic::tests::test_complement_interval_exceeds_chrom ... ok [INFO] [stdout] test genome_arithmetic::tests::test_intersect_report_a_basic ... ok [INFO] [stdout] test genome_arithmetic::tests::test_intersect_multiple_overlaps ... ok [INFO] [stdout] test genome_arithmetic::tests::test_jaccard_bounds ... ok [INFO] [stdout] test genome_arithmetic::tests::test_intersect_strand_opposite ... ok [INFO] [stdout] test genome_arithmetic::tests::test_jaccard_identical ... ok [INFO] [stdout] test genome_arithmetic::tests::test_jaccard_both_empty ... ok [INFO] [stdout] test genome_arithmetic::tests::test_jaccard_partial_overlap ... ok [INFO] [stdout] test coverage::tests::bases_above_threshold ... ok [INFO] [stdout] test genome_arithmetic::tests::test_jaccard_no_overlap ... ok [INFO] [stdout] test genome_arithmetic::tests::test_make_sliding_windows ... ok [INFO] [stdout] test genome_arithmetic::tests::test_make_sliding_windows_zero_step ... ok [INFO] [stdout] test genome_arithmetic::tests::test_jaccard_symmetry ... ok [INFO] [stdout] test genome_arithmetic::tests::test_jaccard_stats_bp_counts ... ok [INFO] [stdout] test genome_arithmetic::tests::test_make_windows_zero_size ... ok [INFO] [stdout] test genome_arithmetic::tests::test_merge_abutting ... ok [INFO] [stdout] test genome_arithmetic::tests::test_merge_disjoint ... ok [INFO] [stdout] test genome_arithmetic::tests::test_merge_multi_chrom ... ok [INFO] [stdout] test genome_arithmetic::tests::test_make_windows_larger_than_chrom ... ok [INFO] [stdout] test genome_arithmetic::tests::test_subtract_empty_b ... ok [INFO] [stdout] test genome_arithmetic::tests::test_merge_strand_aware_same ... ok [INFO] [stdout] test genome_arithmetic::tests::test_subtract_left_trim ... ok [INFO] [stdout] test genome_arithmetic::tests::test_make_windows_basic ... ok [INFO] [stdout] test genome_arithmetic::tests::test_subtract_multiple_b ... ok [INFO] [stdout] test genome_arithmetic::tests::test_subtract_complete_removal ... ok [INFO] [stdout] test genome_arithmetic::tests::test_merge_overlapping ... ok [INFO] [stdout] test genome_arithmetic::tests::test_merge_strand_aware ... ok [INFO] [stdout] test genome_arithmetic::tests::test_subtract_right_trim ... ok [INFO] [stdout] test genome_arithmetic::tests::test_make_windows_exact ... ok [INFO] [stdout] test genome_arithmetic::tests::test_subtract_split_middle ... ok [INFO] [stdout] test genome_arithmetic::tests::test_union_basic ... ok [INFO] [stdout] test genome_arithmetic::tests::test_subtract_no_overlap ... ok [INFO] [stdout] test genome_arithmetic::tests::test_union_disjoint ... ok [INFO] [stdout] test genome_arithmetic::tests::test_intersect_strand_same ... ok [INFO] [stdout] test genome_arithmetic::tests::test_windows_around_clipping ... ok [INFO] [stdout] test genome_arithmetic::tests::test_windows_around ... ok [INFO] [stdout] test genome_arithmetic::tests::test_merge_empty ... ok [INFO] [stdout] test genome_arithmetic::tests::test_subtract_plus_intersect_equals_a ... ok [INFO] [stdout] test genomic::tests::test_interval_contains ... ok [INFO] [stdout] test genomic::tests::test_interval_display ... ok [INFO] [stdout] test genomic::tests::test_interval_distance ... ok [INFO] [stdout] test genomic::tests::test_interval_intersect ... ok [INFO] [stdout] test genomic::tests::test_interval_invalid ... ok [INFO] [stdout] test genomic::tests::test_interval_len ... ok [INFO] [stdout] test genomic::tests::test_interval_merge ... ok [INFO] [stdout] test genomic::tests::test_interval_new ... ok [INFO] [stdout] test genome_arithmetic::tests::test_subtract_strand_mode ... ok [INFO] [stdout] test haplotype::tests::haplotype_blocks_high_ld ... ok [INFO] [stdout] test genomic::tests::test_interval_midpoint ... ok [INFO] [stdout] test genomic::tests::test_interval_with_strand ... ok [INFO] [stdout] test haplotype::tests::haplotype_diversity_maximum ... ok [INFO] [stdout] test interval::tests::test_coverage ... ok [INFO] [stdout] test genomic::tests::test_interval_overlaps ... ok [INFO] [stdout] test interval::tests::test_containing ... ok [INFO] [stdout] test haplotype::tests::phase_em_simple_het ... ok [INFO] [stdout] test haplotype::tests::haplotype_diversity_single ... ok [INFO] [stdout] test haplotype::tests::phase_em_homozygous ... ok [INFO] [stdout] test genomic::tests::test_strand_display ... ok [INFO] [stdout] test genomic::tests::test_strand_predicates ... ok [INFO] [stdout] test interval::tests::test_indexed_containing ... ok [INFO] [stdout] test interval::tests::test_merge_empty ... ok [INFO] [stdout] test interval::tests::test_overlapping ... ok [INFO] [stdout] test interval::tests::test_indexed_matches_linear ... ok [INFO] [stdout] test interval::tests::test_indexed_overlapping ... ok [INFO] [stdout] test interval::tests::test_push_invalidates_index ... ok [INFO] [stdout] test interval_tree::tests::empty_tree ... ok [INFO] [stdout] test interval_tree::tests::count_overlaps ... ok [INFO] [stdout] test interval::tests::test_summary ... ok [INFO] [stdout] test interval_tree::tests::data_preserved ... ok [INFO] [stdout] test interval_tree::tests::following_at_boundary ... ok [INFO] [stdout] test interval_tree::tests::nested_intervals ... ok [INFO] [stdout] test interval_tree::tests::following_basic ... ok [INFO] [stdout] test interval_tree::tests::iter_in_order ... ok [INFO] [stdout] test interval::tests::test_push_and_sort ... ok [INFO] [stdout] test interval_tree::tests::from_sorted ... ok [INFO] [stdout] test interval_tree::tests::all_same_start ... ok [INFO] [stdout] test interval_tree::tests::preceding_at_boundary ... ok [INFO] [stdout] test interval_tree::tests::preceding_basic ... ok [INFO] [stdout] test interval_tree::tests::many_intervals ... ok [INFO] [stdout] test cnv::tests::cbs_two_level ... ok [INFO] [stdout] test cnv::tests::baf_het_and_loh ... ok [INFO] [stdout] test interval_tree::tests::two_intervals ... ok [INFO] [stdout] test liftover::tests::test_liftover_batch_consistency ... ok [INFO] [stdout] test interval::tests::test_empty_set ... ok [INFO] [stdout] test interval::tests::test_merge_overlapping ... ok [INFO] [stdout] test interval_tree::tests::adjacent_intervals ... ok [INFO] [stdout] test interval_tree::tests::single_interval ... ok [INFO] [stdout] test liftover::tests::test_liftover_reverse_strand ... ok [INFO] [stdout] test interval_tree::tests::query_matches_linear_scan ... ok [INFO] [stdout] test liftover::tests::test_parse_empty_input ... ok [INFO] [stdout] test liftover::tests::test_parse_reverse_strand ... ok [INFO] [stdout] test interval_tree::tests::large_tree ... ok [INFO] [stdout] test methylation::tests::test_beta_zero_coverage ... ok [INFO] [stdout] test methylation::tests::test_beta_value_calculation ... ok [INFO] [stdout] test liftover::tests::test_liftover_spanning_blocks ... ok [INFO] [stdout] test liftover::tests::test_liftover_in_gap ... ok [INFO] [stdout] test methylation::tests::test_bisulfite_g_a_t_unaffected ... ok [INFO] [stdout] test liftover::tests::test_parse_basic_chain ... ok [INFO] [stdout] test liftover::tests::test_liftover_no_chain_for_chrom ... ok [INFO] [stdout] test interval_tree::tests::nearest_basic ... ok [INFO] [stdout] test liftover::tests::test_parse_chain_score_ordering ... ok [INFO] [stdout] test liftover::tests::test_parse_invalid_format ... ok [INFO] [stdout] test methylation::tests::test_bisulfite_methylated_c_stays_c ... ok [INFO] [stdout] test liftover::tests::test_parse_multiple_chains ... ok [INFO] [stdout] test liftover::tests::test_liftover_within_single_block ... ok [INFO] [stdout] test liftover::tests::test_liftover_min_match_threshold ... ok [INFO] [stdout] test methylation::tests::test_bisulfite_unmethylated_c_to_t ... ok [INFO] [stdout] test cnv::tests::cbs_alpha_threshold ... ok [INFO] [stdout] test methylation::tests::test_cpg_identification_from_reference ... ok [INFO] [stdout] test methylation::tests::test_cpg_island_found_on_cg_rich_sequence ... ok [INFO] [stdout] test methylation::tests::test_dmr_detected_between_differentially_methylated_groups ... ok [INFO] [stdout] test methylation::tests::test_dmr_none_when_groups_identical ... ok [INFO] [stdout] test methylation::tests::test_non_cpg_position_skipped ... ok [INFO] [stdout] test network::tests::closeness_centrality_complete ... ok [INFO] [stdout] test methylation::tests::test_dmr_min_cpgs_filter ... ok [INFO] [stdout] test methylation::tests::test_no_cpg_island_on_at_rich_sequence ... ok [INFO] [stdout] test network::tests::betweenness_centrality_line ... ok [INFO] [stdout] test network::tests::degree_centrality_star ... ok [INFO] [stdout] test network::tests::from_correlation_matrix_threshold ... ok [INFO] [stdout] test network::tests::from_sparse_matrix ... ok [INFO] [stdout] test network::tests::graph_creation ... ok [INFO] [stdout] test network::tests::louvain_two_cliques ... ok [INFO] [stdout] test network::tests::louvain_with_high_resolution ... ok [INFO] [stdout] test otu::tests::filter_prevalence_removes ... ok [INFO] [stdout] test otu::tests::rarefy_correct_depth ... ok [INFO] [stdout] test otu::tests::relative_abundance_sums_to_one ... ok [INFO] [stdout] test sc_cluster::tests::ari_identical ... ok [INFO] [stdout] test sc_cluster::tests::ari_permuted ... ok [INFO] [stdout] test sc_cluster::tests::ari_single_element ... ok [INFO] [stdout] test sc_cluster::tests::cosine_distance_identical ... ok [INFO] [stdout] test sc_cluster::tests::euclidean_distance ... ok [INFO] [stdout] test sc_cluster::tests::cosine_distance_orthogonal ... ok [INFO] [stdout] test network::tests::louvain_with_resolution_default ... ok [INFO] [stdout] test network::tests::modularity_single_community ... ok [INFO] [stdout] test network::tests::modularity_with_resolution ... ok [INFO] [stdout] test sc_cluster::tests::neighbors_basic ... ok [INFO] [stdout] test otu::tests::filter_min_count_removes ... ok [INFO] [stdout] test sc_cluster::tests::leiden_high_resolution ... ok [INFO] [stdout] test otu::tests::merge_combines_samples ... ok [INFO] [stdout] test otu::tests::otu_table_creation ... ok [INFO] [stdout] test sc_cluster::tests::ari_different_lengths ... ok [INFO] [stdout] test sc_cluster::tests::leiden_custom_key ... ok [INFO] [stdout] test sc_cluster::tests::ari_random ... ok [INFO] [stdout] test sc_cluster::tests::leiden_missing_connectivity ... ok [INFO] [stdout] test sc_cluster::tests::leiden_two_clusters ... ok [INFO] [stdout] test sc_cluster::tests::louvain_wrapper_basic ... ok [INFO] [stdout] test sc_cluster::tests::neighbors_cosine_metric ... ok [INFO] [stdout] test sc_cluster::tests::nmi_empty ... ok [INFO] [stdout] test sc_cluster::tests::nmi_independent ... ok [INFO] [stdout] test sc_cluster::tests::neighbors_missing_pca ... ok [INFO] [stdout] test sc_cluster::tests::neighbors_then_leiden ... ok [INFO] [stdout] test sc_cluster::tests::neighbors_then_louvain ... ok [INFO] [stdout] test sc_cluster::tests::nmi_different_lengths ... ok [INFO] [stdout] test sc_cluster::tests::nmi_identical ... ok [INFO] [stdout] test sc_cluster::tests::nmi_permuted ... ok [INFO] [stdout] test sc_integrate::tests::combat_basic ... ok [INFO] [stdout] test sc_integrate::tests::combat_missing_batch ... ok [INFO] [stdout] test sc_integrate::tests::combat_nonparametric ... ok [INFO] [stdout] test sc_integrate::tests::combat_single_batch ... ok [INFO] [stdout] test sc_integrate::tests::combat_then_metrics ... ok [INFO] [stdout] test sc_integrate::tests::harmony_basic ... ok [INFO] [stdout] test sc_integrate::tests::harmony_missing_batch ... ok [INFO] [stdout] test sc_integrate::tests::lisi_empty_neighbors ... ok [INFO] [stdout] test sc_integrate::tests::labels_to_indices_numeric ... ok [INFO] [stdout] test sc_integrate::tests::labels_to_indices_strings ... ok [INFO] [stdout] test sc_integrate::tests::lisi_two_labels_equal ... ok [INFO] [stdout] test sc_integrate::tests::metrics_missing_embedding ... ok [INFO] [stdout] test sc_integrate::tests::metrics_poorly_mixed ... ok [INFO] [stdout] test sc_integrate::tests::harmony_custom_params ... ok [INFO] [stdout] test sc_integrate::tests::metrics_with_cell_types ... ok [INFO] [stdout] test sc_integrate::tests::metrics_well_mixed ... ok [INFO] [stdout] test sc_integrate::tests::harmony_missing_pca ... ok [INFO] [stdout] test sc_integrate::tests::lisi_single_label ... ok [INFO] [stdout] test sc_integrate::tests::mnn_missing_pca ... ok [INFO] [stdout] test sc_markers::tests::filter_markers_by_log2fc ... ok [INFO] [stdout] test sc_markers::tests::logistic_regression_identical ... ok [INFO] [stdout] test sc_markers::tests::filter_markers_by_pct ... ok [INFO] [stdout] test sc_integrate::tests::mnn_basic ... ok [INFO] [stdout] test sc_markers::tests::logistic_regression_separable ... ok [INFO] [stdout] test sc_integrate::tests::metrics_missing_batch ... ok [INFO] [stdout] test sc_markers::tests::mean_or_zero_empty ... ok [INFO] [stdout] test sc_markers::tests::filter_markers_preserves_method ... ok [INFO] [stdout] test sc_integrate::tests::mnn_reduces_separation ... ok [INFO] [stdout] test sc_markers::tests::filter_markers_by_padj ... ok [INFO] [stdout] test sc_markers::tests::rank_genes_n_genes_limit ... ok [INFO] [stdout] test sc_markers::tests::rank_genes_numeric_labels ... ok [INFO] [stdout] test sc_integrate::tests::harmony_reduces_batch_effect ... ok [INFO] [stdout] test sc_markers::tests::rank_genes_pct_values ... ok [INFO] [stdout] test sc_markers::tests::rank_genes_missing_cluster ... ok [INFO] [stdout] test sc_markers::tests::mean_or_zero_values ... ok [INFO] [stdout] test sc_markers::tests::normal_cdf_complement_values ... ok [INFO] [stdout] test sc_markers::tests::rank_genes_log2fc_sign ... ok [INFO] [stdout] test sc_markers::tests::rank_genes_ttest ... ok [INFO] [stdout] test sc_preprocess::tests::hvg_cellranger_basic ... ok [INFO] [stdout] test sc_preprocess::tests::hvg_seurat_basic ... ok [INFO] [stdout] test sc_preprocess::tests::hvg_n_top_exceeds_n_vars ... ok [INFO] [stdout] test sc_markers::tests::rank_genes_logistic ... ok [INFO] [stdout] test sc_integrate::tests::harmony_three_batches ... ok [INFO] [stdout] test sc_preprocess::tests::hvg_too_few_cells ... ok [INFO] [stdout] test sc_markers::tests::rank_genes_sorted_by_padj ... ok [INFO] [stdout] test sc_preprocess::tests::invert_small_matrix_2x2 ... ok [INFO] [stdout] test sc_preprocess::tests::invert_singular_matrix ... ok [INFO] [stdout] test sc_preprocess::tests::normalize_total_basic ... ok [INFO] [stdout] test sc_preprocess::tests::normalize_total_with_log ... ok [INFO] [stdout] test sc_preprocess::tests::normalize_total_sparse ... ok [INFO] [stdout] test sc_preprocess::tests::regress_out_missing_key ... ok [INFO] [stdout] test sc_preprocess::tests::lcg_produces_different_values ... ok [INFO] [stdout] test sc_preprocess::tests::regress_out_basic ... ok [INFO] [stdout] test sc_markers::tests::rank_genes_wilcoxon ... ok [INFO] [stdout] test sc_preprocess::tests::regress_out_multiple_covariates ... ok [INFO] [stdout] test sc_markers::tests::sigmoid_values ... ok [INFO] [stdout] test sc_preprocess::tests::normalize_then_hvg ... ok [INFO] [stdout] test sc_preprocess::tests::regress_out_no_keys ... ok [INFO] [stdout] test sc_preprocess::tests::normalize_total_zero_cell ... ok [INFO] [stdout] test sc_markers::tests::three_cluster_markers ... ok [INFO] [stdout] test sc_preprocess::tests::scrublet_too_few_cells ... ok [INFO] [stdout] test sc_preprocess::tests::hvg_annotates_means_variances ... ok [INFO] [stdout] test sc_preprocess::tests::simple_median_empty ... ok [INFO] [stdout] test sc_preprocess::tests::score_genes_all_genes_as_signature ... ok [INFO] [stdout] test sc_preprocess::tests::otsu_threshold_bimodal ... ok [INFO] [stdout] test sc_preprocess::tests::regress_out_non_numeric ... ok [INFO] [stdout] test sc_preprocess::tests::score_genes_empty_list ... ok [INFO] [stdout] test sc_preprocess::tests::simple_median_even ... ok [INFO] [stdout] test sc_preprocess::tests::score_genes_invalid_index ... ok [INFO] [stdout] test sc_integrate::tests::mnn_with_cos_norm ... ok [INFO] [stdout] test sc_preprocess::tests::score_genes_basic ... ok [INFO] [stdout] test sc_preprocess::tests::simple_median_odd ... ok [INFO] [stdout] test sc_trajectory::tests::cosine_sim_zero ... ok [INFO] [stdout] test sc_trajectory::tests::diffusion_map_eigenvalues_descending ... ok [INFO] [stdout] test sc_trajectory::tests::cosine_sim_identical ... ok [INFO] [stdout] test sc_trajectory::tests::cosine_sim_orthogonal ... ok [INFO] [stdout] test sc_trajectory::tests::diffusion_map_anisotropic_vs_standard ... ok [INFO] [stdout] test sc_trajectory::tests::diffusion_map_n_components_capped ... ok [INFO] [stdout] test sc_trajectory::tests::dpt_root_out_of_bounds ... ok [INFO] [stdout] test sc_trajectory::tests::dpt_basic ... ok [INFO] [stdout] test sc_trajectory::tests::diffusion_map_basic ... ok [INFO] [stdout] test sc_trajectory::tests::diffusion_map_missing_connectivities ... ok [INFO] [stdout] test sc_trajectory::tests::dpt_missing_diffmap ... ok [INFO] [stdout] test sc_trajectory::tests::diffmap_then_dpt_pipeline ... ok [INFO] [stdout] test sc_trajectory::tests::paga_missing_connectivities ... ok [INFO] [stdout] test sc_trajectory::tests::paga_symmetric_connectivity ... ok [INFO] [stdout] test sc_trajectory::tests::paga_three_clusters ... ok [INFO] [stdout] test sc_trajectory::tests::velocity_missing_spliced ... ok [INFO] [stdout] test sc_trajectory::tests::velocity_missing_unspliced ... ok [INFO] [stdout] test sc_trajectory::tests::velocity_positive_velocity ... ok [INFO] [stdout] test sc_trajectory::tests::velocity_low_count_genes_skipped ... ok [INFO] [stdout] test sc_trajectory::tests::velocity_steady_state ... ok [INFO] [stdout] test sc_trajectory::tests::dpt_two_branches ... ok [INFO] [stdout] test sc_markers::tests::full_marker_pipeline ... ok [INFO] [stdout] test single_cell::tests::get_layer_mut ... ok [INFO] [stdout] test sc_trajectory::tests::paga_missing_cluster_key ... ok [INFO] [stdout] test single_cell::tests::dimension_mismatch_error ... ok [INFO] [stdout] test single_cell::tests::layers ... ok [INFO] [stdout] test sc_trajectory::tests::velocity_graph_has_entries ... ok [INFO] [stdout] test single_cell::tests::layer_shape_mismatch ... ok [INFO] [stdout] test single_cell::tests::basic_construction ... ok [INFO] [stdout] test single_cell::tests::matrix_data_column_means_dense ... ok [INFO] [stdout] test sc_trajectory::tests::paga_two_clusters ... ok [INFO] [stdout] test single_cell::tests::matrix_data_row_sums_dense ... ok [INFO] [stdout] test single_cell::tests::matrix_data_set_dense ... ok [INFO] [stdout] test single_cell::tests::obs_metadata_length_mismatch ... ok [INFO] [stdout] test single_cell::tests::obsm_embedding ... ok [INFO] [stdout] test single_cell::tests::obsp_add_get ... ok [INFO] [stdout] test single_cell::tests::matrix_data_column_sums_dense ... ok [INFO] [stdout] test single_cell::tests::set_x_valid ... ok [INFO] [stdout] test single_cell::tests::obsp_wrong_shape ... ok [INFO] [stdout] test single_cell::tests::matrix_data_to_flat_row_major_dense ... ok [INFO] [stdout] test single_cell::tests::matrix_data_to_flat_row_major_sparse ... ok [INFO] [stdout] test single_cell::tests::obs_metadata ... ok [INFO] [stdout] test single_cell::tests::matrix_data_set_sparse ... ok [INFO] [stdout] test single_cell::tests::subset_obs ... ok [INFO] [stdout] test single_cell::tests::sparse_x ... ok [INFO] [stdout] test sc_preprocess::tests::scrublet_basic ... ok [INFO] [stdout] test single_cell::tests::subset_vars_basic ... ok [INFO] [stdout] test single_cell::tests::uns_add_get ... ok [INFO] [stdout] test sparse::tests::test_column_means ... ok [INFO] [stdout] test sparse::tests::test_column_means_zero_rows ... ok [INFO] [stdout] test sparse::tests::test_column_sums_empty ... ok [INFO] [stdout] test sparse::tests::test_csr_empty ... ok [INFO] [stdout] test sparse::tests::test_density ... ok [INFO] [stdout] test single_cell::tests::summary_format ... ok [INFO] [stdout] test sparse::tests::test_csr_roundtrip ... ok [INFO] [stdout] test sparse::tests::test_column_sums ... ok [INFO] [stdout] test single_cell::tests::var_metadata ... ok [INFO] [stdout] test single_cell::tests::x_mut_modify ... ok [INFO] [stdout] test sparse::tests::test_csr_single_row ... ok [INFO] [stdout] test sparse::tests::test_from_triplets ... ok [INFO] [stdout] test single_cell::tests::subset_vars_out_of_bounds ... ok [INFO] [stdout] test sparse::tests::test_n_rows_n_cols ... ok [INFO] [stdout] test sparse::tests::test_from_dense ... ok [INFO] [stdout] test sparse::tests::test_from_dense_with_threshold ... ok [INFO] [stdout] test sparse::tests::test_from_triplets_bounds_check ... ok [INFO] [stdout] test sparse::tests::test_from_triplets_length_mismatch ... ok [INFO] [stdout] test sparse::tests::test_insert ... ok [INFO] [stdout] test sparse::tests::test_iter ... ok [INFO] [stdout] test sparse::tests::test_new_empty ... ok [INFO] [stdout] test sparse::tests::test_row_col_nnz ... ok [INFO] [stdout] test sparse::tests::test_row_sums ... ok [INFO] [stdout] test sparse::tests::test_to_dense ... ok [INFO] [stdout] test sparse::tests::test_zero_dimension_density ... ok [INFO] [stdout] test sc_preprocess::tests::scrublet_stores_predictions ... ok [INFO] [stdout] test sparse::tests::test_map_values ... ok [INFO] [stdout] test sc_trajectory::tests::dpt_root_at_end ... ok [INFO] [stdout] test single_cell::tests::qc_metrics ... ok [INFO] [stdout] test spatial::tests::test_cooccurrence_coexpressed ... ok [INFO] [stdout] test single_cell::tests::set_x_shape_mismatch ... ok [INFO] [stdout] test spatial::tests::test_delaunay_triangle ... ok [INFO] [stdout] test spatial::tests::test_gearys_c_clustered ... ok [INFO] [stdout] test spatial::tests::test_gearys_c_random ... ok [INFO] [stdout] test spatial::tests::test_lr_high_score ... ok [INFO] [stdout] test spatial::tests::test_cooccurrence_independent ... ok [INFO] [stdout] test spatial::tests::test_delaunay_circumcircle_valid ... ok [INFO] [stdout] test spatial::tests::test_delaunay_four_points ... ok [INFO] [stdout] test spatial::tests::test_knn_symmetry ... ok [INFO] [stdout] test variant::tests::test_empty_ref_allele ... ok [INFO] [stdout] test variant::tests::test_scored ... ok [INFO] [stdout] test variant::tests::test_snv_construction ... ok [INFO] [stdout] test variant::tests::test_to_genomic_interval ... ok [INFO] [stdout] test variant::tests::test_to_genomic_interval_deletion ... ok [INFO] [stdout] test variant::tests::test_transition ... ok [INFO] [stdout] test variant::tests::test_transition_non_snv ... ok [INFO] [stdout] test variant::tests::test_transversion ... ok [INFO] [stdout] test variant::tests::test_variant_type_deletion ... ok [INFO] [stdout] test variant::tests::test_variant_type_insertion ... ok [INFO] [stdout] test variant::tests::test_variant_type_mnv ... ok [INFO] [stdout] test variant::tests::test_variant_type_snv ... ok [INFO] [stdout] test variant_annotation::tests::test_aa_three_letter_codes ... ok [INFO] [stdout] test spatial::tests::test_knn_min_neighbors ... ok [INFO] [stdout] test spatial::tests::test_morans_i_random ... ok [INFO] [stdout] test variant_annotation::tests::test_codon_change_field ... ok [INFO] [stdout] test variant_annotation::tests::test_exon_distance_splice_site ... ok [INFO] [stdout] test variant_annotation::tests::test_codon_table_basics ... ok [INFO] [stdout] test variant_annotation::tests::test_annotation_config_default ... ok [INFO] [stdout] test variant_annotation::tests::test_downstream_variant ... ok [INFO] [stdout] test variant_annotation::tests::test_batch_annotation_interval_tree ... ok [INFO] [stdout] test spatial::tests::test_morans_i_checkerboard ... ok [INFO] [stdout] test variant::tests::test_empty_alt_allele_entry ... ok [INFO] [stdout] test variant::tests::test_annotated ... ok [INFO] [stdout] test variant::tests::test_empty_alt_alleles ... ok [INFO] [stdout] test variant_annotation::tests::test_five_prime_utr ... ok [INFO] [stdout] test variant_annotation::tests::test_frameshift_deletion ... ok [INFO] [stdout] test variant_annotation::tests::test_hgvs_coding_notation ... ok [INFO] [stdout] test variant_annotation::tests::test_hgvs_protein_notation ... ok [INFO] [stdout] test variant_annotation::tests::test_inframe_deletion ... ok [INFO] [stdout] test variant_annotation::tests::test_intronic_variant ... ok [INFO] [stdout] test variant_annotation::tests::test_missense_snv ... ok [INFO] [stdout] test variant_annotation::tests::test_non_coding_gene ... ok [INFO] [stdout] test variant_annotation::tests::test_nonsense_stop_gain ... ok [INFO] [stdout] test variant_annotation::tests::test_reverse_complement ... ok [INFO] [stdout] test variant_annotation::tests::test_reverse_strand_gene ... ok [INFO] [stdout] test variant_annotation::tests::test_splice_acceptor ... ok [INFO] [stdout] test variant_annotation::tests::test_splice_donor ... ok [INFO] [stdout] test variant_annotation::tests::test_splice_scoring ... ok [INFO] [stdout] test variant_annotation::tests::test_stop_loss ... ok [INFO] [stdout] test variant_annotation::tests::test_three_prime_utr ... ok [INFO] [stdout] test variant_annotation::tests::test_variant_far_from_gene_no_effect ... ok [INFO] [stdout] test variant_annotation::tests::test_synonymous_snv ... ok [INFO] [stdout] test variant_annotation::tests::test_variant_different_chrom_no_effect ... ok [INFO] [stdout] test variant_annotation::tests::test_upstream_variant ... ok [INFO] [stdout] test variant_annotation::tests::test_start_loss ... ok [INFO] [stdout] test spatial::tests::test_lr_pvalue_reasonable ... ok [INFO] [stdout] test sparse::tests::test_scale_rows ... ok [INFO] [stdout] test spatial::tests::test_morans_i_clustered ... ok [INFO] [stdout] test sparse::tests::test_summary ... ok [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/cyanea_phylo-bc1120dcfb5c62c9) [INFO] [stdout] test cnv::tests::cbs_three_level ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 434 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.14s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 225 tests [INFO] [stdout] test bootstrap::tests::bipartitions_four_leaf_tree ... ok [INFO] [stdout] test bootstrap::tests::bipartitions_star_tree ... ok [INFO] [stdout] test bootstrap::tests::bipartitions_five_leaf_tree ... ok [INFO] [stdout] test bootstrap::tests::bootstrap_star_tree_returns_empty ... ok [INFO] [stdout] test compare::tests::branch_score_different_topology ... ok [INFO] [stdout] test compare::tests::branch_score_identical ... ok [INFO] [stdout] test compare::tests::rf_five_leaves ... ok [INFO] [stdout] test compare::tests::rf_normalized_small_tree ... ok [INFO] [stdout] test compare::tests::rf_normalized_range ... ok [INFO] [stdout] test bootstrap::tests::bootstrap_perfect_support ... ok [INFO] [stdout] test bootstrap::tests::bootstrap_empty_sequences_error ... ok [INFO] [stdout] test bootstrap::tests::bipartitions_three_leaf_tree ... ok [INFO] [stdout] test consensus::tests::strict_subset_of_majority ... ok [INFO] [stdout] test bootstrap::tests::bootstrap_values_in_range ... ok [INFO] [stdout] test construct::tests::nj_branch_lengths_positive ... ok [INFO] [stdout] test construct::tests::nj_name_mismatch_error ... ok [INFO] [stdout] test construct::tests::nj_four_leaves_topology ... ok [INFO] [stdout] test construct::tests::nj_three_leaves ... ok [INFO] [stdout] test compare::tests::branch_score_different_lengths ... ok [INFO] [stdout] test compare::tests::leaf_mismatch_error ... ok [INFO] [stdout] test compare::tests::rf_different_topologies ... ok [INFO] [stdout] test compare::tests::rf_identical_trees ... ok [INFO] [stdout] test compare::tests::rf_normalized_identical ... ok [INFO] [stdout] test consensus::tests::bipartition_frequencies_correct ... ok [INFO] [stdout] test consensus::tests::extended_adds_compatible ... ok [INFO] [stdout] test consensus::tests::majority_rule_identical_trees ... ok [INFO] [stdout] test construct::tests::upgma_three_leaves ... ok [INFO] [stdout] test construct::tests::upgma_two_leaves ... ok [INFO] [stdout] test dating::tests::root_to_tip_linear ... ok [INFO] [stdout] test dating::tests::strict_clock_rate ... ok [INFO] [stdout] test dating::tests::strict_clock_ultrametric ... ok [INFO] [stdout] test distance::tests::classify_same_base ... ok [INFO] [stdout] test distance::tests::classify_lowercase ... ok [INFO] [stdout] test distance::tests::classify_transition ... ok [INFO] [stdout] test distance::tests::classify_transversion ... ok [INFO] [stdout] test distance::tests::jc_known_value ... ok [INFO] [stdout] test distance::tests::jc_saturation_error ... ok [INFO] [stdout] test dating::tests::dating_validates_input ... ok [INFO] [stdout] test distance::tests::jc_negative_error ... ok [INFO] [stdout] test distance::tests::jc_zero ... ok [INFO] [stdout] test distance::tests::k2p_invalid_rates ... ok [INFO] [stdout] test consensus::tests::strict_discordant_is_star ... ok [INFO] [stdout] test distance::tests::k2p_known_value ... ok [INFO] [stdout] test distance::tests::k2p_negative_error ... ok [INFO] [stdout] test distance::tests::p_distance_empty_error ... ok [INFO] [stdout] test distance::tests::p_distance_half ... ok [INFO] [stdout] test construct::tests::upgma_four_leaves_ultrametric ... ok [INFO] [stdout] test bootstrap::tests::bootstrap_zero_replicates ... ok [INFO] [stdout] test construct::tests::nj_two_leaves ... ok [INFO] [stdout] test distance::tests::k2p_zero ... ok [INFO] [stdout] test distance::tests::p_distance_all_different ... ok [INFO] [stdout] test distance::tests::p_distance_identical ... ok [INFO] [stdout] test distance::tests::p_distance_length_mismatch ... ok [INFO] [stdout] test construct::tests::upgma_name_mismatch_error ... ok [INFO] [stdout] test drawing::tests::radial_leaves_same_radius ... ok [INFO] [stdout] test drawing::tests::rectangular_leaf_x_equals_distance ... ok [INFO] [stdout] test drawing::tests::rectangular_leaves_evenly_spaced ... ok [INFO] [stdout] test generic_likelihood::tests::ambiguous_bases_handled ... ok [INFO] [stdout] test drawing::tests::cladogram_leaves_same_x ... ok [INFO] [stdout] test generic_likelihood::tests::empty_sequences_error ... ok [INFO] [stdout] test generic_likelihood::tests::mismatched_leaf_count_error ... ok [INFO] [stdout] test generic_likelihood::tests::generic_gtr_gamma_matches_original ... ok [INFO] [stdout] test likelihood::tests::nni_five_leaves ... ok [INFO] [stdout] test likelihood::tests::likelihood_length_mismatch ... ok [INFO] [stdout] test likelihood::tests::likelihood_empty_sequences ... ok [INFO] [stdout] test generic_likelihood::tests::site_likelihoods_sum_matches_total ... ok [INFO] [stdout] test likelihood::tests::nni_on_optimal_tree_is_stable ... ok [INFO] [stdout] test likelihood::tests::likelihood_identical_sequences ... ok [INFO] [stdout] test likelihood::tests::likelihood_is_negative ... ok [INFO] [stdout] test generic_likelihood::tests::generic_jc69_matches_original ... ok [INFO] [stdout] test likelihood::tests::tree_likelihood_gtr_finite ... ok [INFO] [stdout] test likelihood::tests::nni_preserves_or_improves_likelihood ... ok [INFO] [stdout] test likelihood::tests::likelihood_wrong_sequence_count ... ok [INFO] [stdout] test marginal::tests::marginal_correct_dimensions ... ok [INFO] [stdout] test marginal::tests::marginal_posteriors_sum_to_one ... ok [INFO] [stdout] test model_selection::tests::aic_known_values ... ok [INFO] [stdout] test mcmc::tests::strict_clock_constrains_rates ... ok [INFO] [stdout] test model_selection::tests::aicc_converges_to_aic_for_large_n ... ok [INFO] [stdout] test mcmc::tests::coalescent_prior_penalizes_long_branches ... ok [INFO] [stdout] test mcmc::tests::empty_samples_handled ... ok [INFO] [stdout] test marginal::tests::marginal_identical_sequences ... ok [INFO] [stdout] test marginal::tests::marginal_map_agrees_with_fitch ... ok [INFO] [stdout] test mcmc::tests::birth_death_prior ... ok [INFO] [stdout] test mcmc::tests::branch_scale_is_reversible ... ok [INFO] [stdout] test model_selection::tests::bic_known_values ... ok [INFO] [stdout] test model_selection::tests::lrt_p_value_bounds ... ok [INFO] [stdout] test model_selection::tests::lrt_nested_models ... ok [INFO] [stdout] test models::tests::gamma_rates_average_to_one ... ok [INFO] [stdout] test models::tests::gtr_rows_sum_to_one ... ok [INFO] [stdout] test models::tests::hky85_as_gtr ... ok [INFO] [stdout] test models::tests::jc69_known_value ... ok [INFO] [stdout] test models::tests::jc69_large_t_approaches_uniform ... ok [INFO] [stdout] test model_selection::tests::model_finder_ranks_jc69_on_jc69_data ... ok [INFO] [stdout] test model_selection::tests::lrt_large_stat_is_significant ... ok [INFO] [stdout] test models::tests::gtr_equal_rates_matches_jc69 ... ok [INFO] [stdout] test models::tests::gtr_t_zero_is_identity ... ok [INFO] [stdout] test models::tests::jc69_probabilities_non_negative ... ok [INFO] [stdout] test models::tests::jc69_rows_sum_to_one ... ok [INFO] [stdout] test models::tests::jc69_symmetric ... ok [INFO] [stdout] test models::tests::nucleotide_index_lowercase ... ok [INFO] [stdout] test models::tests::nucleotide_index_standard ... ok [INFO] [stdout] test models::tests::nucleotide_index_uracil ... ok [INFO] [stdout] test newick::tests::parse_error_missing_semicolon ... ok [INFO] [stdout] test newick::tests::parse_error_bad_float ... ok [INFO] [stdout] test newick::tests::parse_error_unbalanced_parens ... ok [INFO] [stdout] test newick::tests::parse_internal_names ... ok [INFO] [stdout] test newick::tests::parse_simple_pair ... ok [INFO] [stdout] test newick::tests::parse_nested ... ok [INFO] [stdout] test newick::tests::parse_single_leaf ... ok [INFO] [stdout] test newick::tests::parse_whitespace ... ok [INFO] [stdout] test newick::tests::roundtrip_no_lengths ... ok [INFO] [stdout] test newick::tests::parse_with_branch_lengths ... ok [INFO] [stdout] test newick::tests::roundtrip_with_lengths ... ok [INFO] [stdout] test nexus::tests::parse_basic_nexus ... ok [INFO] [stdout] test newick::tests::write_simple ... ok [INFO] [stdout] test nexus::tests::parse_missing_header ... ok [INFO] [stdout] test nexus::tests::parse_taxa_only ... ok [INFO] [stdout] test nexus::tests::parse_multiple_trees ... ok [INFO] [stdout] test nexus::tests::parse_with_translate ... ok [INFO] [stdout] test nexus::tests::write_empty ... ok [INFO] [stdout] test nexus::tests::write_roundtrip ... ok [INFO] [stdout] test protein_models::tests::amino_acid_index_invalid ... ok [INFO] [stdout] test protein_models::tests::amino_acid_index_maps_all_20 ... ok [INFO] [stdout] test protein_models::tests::dayhoff_frequencies_sum_to_one ... ok [INFO] [stdout] test protein_models::tests::jtt_frequencies_sum_to_one ... ok [INFO] [stdout] test models::tests::jc69_t_zero_is_identity ... ok [INFO] [stdout] test nexus::tests::parse_with_branch_lengths ... ok [INFO] [stdout] test models::tests::nucleotide_index_invalid ... ok [INFO] [stdout] test protein_models::tests::lg_frequencies_sum_to_one ... ok [INFO] [stdout] test mcmc::tests::acceptance_rates_in_range ... ok [INFO] [stdout] test protein_models::tests::wag_frequencies_sum_to_one ... ok [INFO] [stdout] test reconstruct::tests::cost_matrix_from_flat ... ok [INFO] [stdout] test reconstruct::tests::fitch_all_same ... ok [INFO] [stdout] test reconstruct::tests::fitch_empty_tree_error ... ok [INFO] [stdout] test reconstruct::tests::fitch_missing_leaf_state ... ok [INFO] [stdout] test reconstruct::tests::fitch_one_change ... ok [INFO] [stdout] test reconstruct::tests::fitch_two_changes ... ok [INFO] [stdout] test reconstruct::tests::reconstruct_sequences_basic ... ok [INFO] [stdout] test reconstruct::tests::sankoff_invalid_state ... ok [INFO] [stdout] test protein_models::tests::rate_matrix_rows_sum_to_zero ... ok [INFO] [stdout] test reconstruct::tests::sankoff_uniform_all_same ... ok [INFO] [stdout] test protein_models::tests::lg_and_wag_give_different_p ... ok [INFO] [stdout] test reconstruct::tests::sankoff_one_different ... ok [INFO] [stdout] test simulation::tests::coalescent_branch_lengths_nonnegative ... ok [INFO] [stdout] test simulation::tests::coalescent_correct_leaf_count ... ok [INFO] [stdout] test simulation::tests::coalescent_height_scales_with_pop_size ... ok [INFO] [stdout] test simulation::tests::growth_coalescent_shorter_than_constant ... ok [INFO] [stdout] test simulation::tests::evolution_correct_sequence_length ... ok [INFO] [stdout] test protein_models::tests::load_custom_model ... ok [INFO] [stdout] test simulation::tests::evolution_leaf_count_matches_tree ... ok [INFO] [stdout] test species_tree::tests::astral_five_taxa ... ok [INFO] [stdout] test simulation::tests::long_branches_cause_divergence ... ok [INFO] [stdout] test simulation::tests::zero_branches_identical_sequences ... ok [INFO] [stdout] test species_tree::tests::empty_gene_tree_list ... ok [INFO] [stdout] test protein_models::tests::p_zero_is_identity ... ok [INFO] [stdout] test species_tree::tests::reconciliation_matching_trees ... ok [INFO] [stdout] test species_tree::tests::reconciliation_detects_duplication ... ok [INFO] [stdout] test species_tree::tests::gcf_all_agree ... ok [INFO] [stdout] test species_tree::tests::gcf_with_discordance ... ok [INFO] [stdout] test subst_model::tests::build_rate_matrix_rows_sum_to_zero ... ok [INFO] [stdout] test subst_model::tests::eigen_decompose_identity ... ok [INFO] [stdout] test species_tree::tests::scf_computed ... ok [INFO] [stdout] test subst_model::tests::frequencies_sum_to_one ... ok [INFO] [stdout] test subst_model::tests::gtr_trait_matches_original ... ok [INFO] [stdout] test subst_model::tests::jc69_trait_matches_original ... ok [INFO] [stdout] test subst_model::tests::n_free_params_correct ... ok [INFO] [stdout] test subst_model::tests::n_states_returns_4_for_nucleotide ... ok [INFO] [stdout] test subst_model::tests::p_zero_is_identity ... ok [INFO] [stdout] test subst_model::tests::rows_sum_to_one ... ok [INFO] [stdout] test tree::tests::add_child_works ... ok [INFO] [stdout] test tree::tests::extract_subtree_correct_leaves ... ok [INFO] [stdout] test tree::tests::extract_subtree_preserves_topology ... ok [INFO] [stdout] test tree::tests::depth_of_sample_tree ... ok [INFO] [stdout] test tree::tests::depth_of_single_node ... ok [INFO] [stdout] test tree::tests::add_child_invalid_parent ... ok [INFO] [stdout] test tree::tests::leaf_and_internal_counts ... ok [INFO] [stdout] test tree::tests::midpoint_root_balanced ... ok [INFO] [stdout] test tree::tests::mrca_cousins ... ok [INFO] [stdout] test tree::tests::mrca_parent_child ... ok [INFO] [stdout] test tree::tests::leaf_names_sorted ... ok [INFO] [stdout] test tree::tests::mrca_same_node ... ok [INFO] [stdout] test tree::tests::mrca_siblings ... ok [INFO] [stdout] test tree::tests::new_tree_has_single_root ... ok [INFO] [stdout] test tree::tests::preorder_traversal ... ok [INFO] [stdout] test tree::tests::postorder_traversal ... ok [INFO] [stdout] test protein_models::tests::p_rows_sum_to_one ... ok [INFO] [stdout] test tree::tests::subtree_at_extracts_clade ... ok [INFO] [stdout] test tree::tests::total_branch_length_works ... ok [INFO] [stdout] test tree_search::tests::invalid_prune_returns_error ... ok [INFO] [stdout] test tree_search::tests::nni_search_generic_matches ... ok [INFO] [stdout] test mcmc::tests::posterior_summary_returns_map_tree ... ok [INFO] [stdout] test tree_search::tests::spr_no_op_when_regraft_is_parent ... ok [INFO] [stdout] test tree_search::tests::spr_on_5_taxon_produces_valid_tree ... ok [INFO] [stdout] test tree_search::tests::spr_preserves_leaf_names ... ok [INFO] [stdout] test mcmc::tests::log_posterior_is_ll_plus_prior ... ok [INFO] [stdout] test tree::tests::reroot_preserves_total_branch_length ... ok [INFO] [stdout] test tree::tests::subtree_leaf_names_works ... ok [INFO] [stdout] test species_tree::tests::astral_identical_gene_trees ... ok [INFO] [stdout] test tree::tests::summary_format ... ok [INFO] [stdout] test tree::tests::reroot_preserves_leaf_set ... ok [INFO] [stdout] test tree_search::tests::parsimony_ratchet_improves ... ok [INFO] [stdout] test tree_search::tests::tbr_produces_valid_tree ... ok [INFO] [stdout] test unifrac::tests::faiths_pd_empty_taxa_error ... ok [INFO] [stdout] test unifrac::tests::faiths_pd_all_taxa_equals_total_bl ... ok [INFO] [stdout] test unifrac::tests::generalized_alpha1_approx_weighted ... ok [INFO] [stdout] test unifrac::tests::faiths_pd_no_match_error ... ok [INFO] [stdout] test unifrac::tests::faiths_pd_single_taxon_root_to_leaf ... ok [INFO] [stdout] test unifrac::tests::unifrac_matrix_symmetric ... ok [INFO] [stdout] test mcmc::tests::burnin_discarded ... ok [INFO] [stdout] test unifrac::tests::unweighted_disjoint_is_one_star ... ok [INFO] [stdout] test unifrac::tests::unifrac_matrix_too_few_samples_error ... ok [INFO] [stdout] test tree_search::tests::stochastic_nni_converges ... ok [INFO] [stdout] test unifrac::tests::unweighted_symmetric ... ok [INFO] [stdout] test unifrac::tests::weighted_identical_is_zero ... ok [INFO] [stdout] test unifrac::tests::weighted_different_abundances ... ok [INFO] [stdout] test tree_search::tests::spr_search_improves_likelihood ... ok [INFO] [stdout] test unifrac::tests::generalized_negative_alpha_error ... ok [INFO] [stdout] test unifrac::tests::unweighted_identical_is_zero ... ok [INFO] [stdout] test mcmc::tests::mcmc_converges_on_tiny_tree ... ok [INFO] [stdout] test generic_likelihood::tests::protein_likelihood_computable ... ok [INFO] [stdout] test mcmc::tests::ess_positive ... ok [INFO] [stdout] test newick::proptests::parse_newick_does_not_panic ... ok [INFO] [stdout] test model_selection::tests::model_finder_on_protein_data ... ok [INFO] [stdout] test newick::proptests::node_count_ge_leaf_count ... ok [INFO] [stdout] test newick::proptests::newick_roundtrip_preserves_leaf_names ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 225 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.41s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/cyanea-bcfcbeaa5ad094f4) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/cyanea_seq-cc0acb0043845476) [INFO] [stdout] [INFO] [stdout] running 474 tests [INFO] [stdout] test alphabet::tests::dna_accepts_all_iupac_bases ... ok [INFO] [stdout] test alphabet::tests::dna_rejects_u ... ok [INFO] [stdout] test alphabet::tests::protein_rejects_invalid ... ok [INFO] [stdout] test alphabet::tests::rna_accepts_all_iupac_bases ... ok [INFO] [stdout] test alphabet::tests::rna_rejects_t ... ok [INFO] [stdout] test alphabet::tests::protein_accepts_full_set ... ok [INFO] [stdout] test assembly::tests::empty_contigs_error ... ok [INFO] [stdout] test assembly::tests::assembly_stats_simple ... ok [INFO] [stdout] test assembly::tests::gc_content_correct ... ok [INFO] [stdout] test bwt::tests::bwt_length_matches ... ok [INFO] [stdout] test bwt::tests::roundtrip_banana ... ok [INFO] [stdout] test bwt::tests::roundtrip_dna ... ok [INFO] [stdout] test bwt::tests::roundtrip_empty ... ok [INFO] [stdout] test bwt::tests::roundtrip_long_sequence ... ok [INFO] [stdout] test bwt::tests::roundtrip_single_char ... ok [INFO] [stdout] test codon::tests::backward_compat_translate_codon ... ok [INFO] [stdout] test codon::tests::backward_compat_translate_sequence ... ok [INFO] [stdout] test codon::tests::cai_high_adaptation ... ok [INFO] [stdout] test bwt::tests::primary_index_is_valid ... ok [INFO] [stdout] test codon::tests::cai_error_on_empty ... ok [INFO] [stdout] test bwt::tests::roundtrip_all_different ... ok [INFO] [stdout] test codon::tests::bacterial_plastid_same_aas_different_starts ... ok [INFO] [stdout] test codon::tests::codon_usage_merge ... ok [INFO] [stdout] test codon::tests::invertebrate_mito_differences ... ok [INFO] [stdout] test codon::tests::rna_codons_work ... ok [INFO] [stdout] test codon::tests::rscu_single_codon_family ... ok [INFO] [stdout] test assembly::tests::n50_known_values ... ok [INFO] [stdout] test bwt::tests::roundtrip_repeated_chars ... ok [INFO] [stdout] test codon::tests::ciliate_differences ... ok [INFO] [stdout] test codon::tests::classify_nonsynonymous ... ok [INFO] [stdout] test codon::tests::translate_dna_codons ... ok [INFO] [stdout] test codon::tests::classify_stop_involved ... ok [INFO] [stdout] test codon::tests::classify_synonymous ... ok [INFO] [stdout] test bwt::tests::roundtrip_mississippi ... ok [INFO] [stdout] test codon::tests::count_sites_four_fold ... ok [INFO] [stdout] test codon::tests::mycoplasma_differences ... ok [INFO] [stdout] test codon::tests::codon_usage_basic ... ok [INFO] [stdout] test codon::tests::translate_sequence_incomplete_codon_ignored ... ok [INFO] [stdout] test codon::tests::translate_sequence_full_includes_stops ... ok [INFO] [stdout] test codon::tests::vertebrate_mito_differences ... ok [INFO] [stdout] test codon::tests::yeast_mito_differences ... ok [INFO] [stdout] test debruijn::tests::debruijn_contains_kmer ... ok [INFO] [stdout] test debruijn::tests::debruijn_node_edge_counts ... ok [INFO] [stdout] test codon::tests::start_stop_codons ... ok [INFO] [stdout] test debruijn::tests::unitig_extraction_simple ... ok [INFO] [stdout] test fasta::tests::test_fasta_file_not_found ... ok [INFO] [stdout] test codon::tests::translate_sequence_basic ... ok [INFO] [stdout] test fasta_index::tests::build_index_from_fasta ... ok [INFO] [stdout] test fasta::tests::test_empty_fasta ... ok [INFO] [stdout] test fasta_index::tests::fetch_entire_sequence ... ok [INFO] [stdout] test codon::tests::rscu_two_fold_degenerate ... ok [INFO] [stdout] test debruijn::tests::unitig_coverage_correct ... ok [INFO] [stdout] test fasta::tests::test_fasta_parsing ... ok [INFO] [stdout] test fasta_index::tests::error_unknown_sequence ... ok [INFO] [stdout] test fasta_index::tests::fetch_subsequence ... ok [INFO] [stdout] test debruijn::tests::debruijn_simple_sequence ... ok [INFO] [stdout] test fasta_index::tests::error_out_of_bounds ... ok [INFO] [stdout] test fasta_index::tests::fetch_across_line_boundary ... ok [INFO] [stdout] test fasta_index::tests::parse_fai_format ... ok [INFO] [stdout] test fasta_index::tests::multi_sequence_independent_fetch ... ok [INFO] [stdout] test fm_index::tests::build_simple ... ok [INFO] [stdout] test fm_index::tests::build_single_base ... ok [INFO] [stdout] test codon::tests::standard_all_64_codons ... ok [INFO] [stdout] test fm_index::tests::count_empty_pattern ... ok [INFO] [stdout] test fm_index::tests::search_empty_pattern ... ok [INFO] [stdout] test fm_index::tests::search_full_text ... ok [INFO] [stdout] test fm_index::tests::search_multiple_occurrences ... ok [INFO] [stdout] test fm_index::tests::search_repeated_sequence ... ok [INFO] [stdout] test fastq::tests::annotated_trait ... ok [INFO] [stdout] test fm_index::tests::search_single_occurrence ... ok [INFO] [stdout] test fm_index::tests::search_non_existent ... ok [INFO] [stdout] test fastq::tests::parse_temp_fastq ... ok [INFO] [stdout] test fasta_index::tests::write_and_read_roundtrip ... ok [INFO] [stdout] test fastq::tests::length_mismatch_error ... ok [INFO] [stdout] test fm_index::tests::search_no_match ... ok [INFO] [stdout] test fmd_index::tests::backward_extension ... ok [INFO] [stdout] test fmd_index::tests::backward_search_exact_match ... ok [INFO] [stdout] test fmd_index::tests::backward_search_empty_pattern ... ok [INFO] [stdout] test fmd_index::tests::backward_search_full_text ... ok [INFO] [stdout] test fmd_index::tests::backward_search_single_base ... ok [INFO] [stdout] test fm_index::tests::count_non_dna_pattern ... ok [INFO] [stdout] test fmd_index::tests::build_simple ... ok [INFO] [stdout] test fmd_index::tests::complement_bases ... ok [INFO] [stdout] test fm_index::tests::search_at_boundaries ... ok [INFO] [stdout] test fm_index::tests::count_matches_search ... ok [INFO] [stdout] test fmd_index::tests::forward_extension ... ok [INFO] [stdout] test fm_index::tests::search_longer_dna ... ok [INFO] [stdout] test fmd_index::tests::forward_and_backward_agree ... ok [INFO] [stdout] test fm_index::tests::search_single_base ... ok [INFO] [stdout] test fmd_index::tests::bi_interval_empty ... ok [INFO] [stdout] test codon::tests::count_sites_basic ... ok [INFO] [stdout] test fmd_index::tests::locate_filters_to_original_text ... ok [INFO] [stdout] test fmd_index::tests::backward_search_no_match ... ok [INFO] [stdout] test fmd_index::tests::locate_repeated_sequence ... ok [INFO] [stdout] test fmd_index::tests::revcomp ... ok [INFO] [stdout] test fmd_index::tests::reverse_complement_symmetry ... ok [INFO] [stdout] test kmer::tests::k_zero_error ... ok [INFO] [stdout] test fmd_index::tests::smems_empty_query ... ok [INFO] [stdout] test fmd_index::tests::smems_min_len_filter ... ok [INFO] [stdout] test fmd_index::tests::smems_no_match_in_query ... ok [INFO] [stdout] test fmd_index::tests::smems_simple ... ok [INFO] [stdout] test fmd_index::tests::smems_multiple_matches ... ok [INFO] [stdout] test fmd_index::tests::smems_supermaximal_property ... ok [INFO] [stdout] test kmer::tests::exact_size ... ok [INFO] [stdout] test masking::tests::dust_dinucleotide_repeat ... ok [INFO] [stdout] test masking::tests::dust_random_dna ... ok [INFO] [stdout] test masking::tests::dust_short ... ok [INFO] [stdout] test masking::tests::mask_preserves_length ... ok [INFO] [stdout] test masking::tests::masked_fraction ... ok [INFO] [stdout] test masking::tests::dust_empty ... ok [INFO] [stdout] test masking::tests::seg_poly_ala ... ok [INFO] [stdout] test masking::tests::dust_homopolymer ... ok [INFO] [stdout] test masking::tests::seg_empty ... ok [INFO] [stdout] test masking::tests::seg_diverse_protein ... ok [INFO] [stdout] test masking::tests::hard_mask_protein ... ok [INFO] [stdout] test fmd_index::tests::init_interval_valid ... ok [INFO] [stdout] test kmer::tests::basic_k2 ... ok [INFO] [stdout] test masking::tests::soft_mask_output ... ok [INFO] [stdout] test kmer::tests::double_ended ... ok [INFO] [stdout] test masking::tests::tandem_min_copies ... ok [INFO] [stdout] test masking::tests::tandem_dinucleotide ... ok [INFO] [stdout] test masking::tests::tandem_empty ... ok [INFO] [stdout] test minhash::tests::canonical_kmers_same_sketch ... ok [INFO] [stdout] test masking::tests::seg_extension ... ok [INFO] [stdout] test masking::tests::hard_mask_dna ... ok [INFO] [stdout] test masking::tests::tandem_trinucleotide ... ok [INFO] [stdout] test kmer::tests::k_exceeds_len_error ... ok [INFO] [stdout] test fmd_index::tests::init_interval_invalid ... ok [INFO] [stdout] test minhash::tests::fracminhash_containment_subset ... ok [INFO] [stdout] test minhash::tests::fracminhash_incompatible_scale_error ... ok [INFO] [stdout] test minhash::tests::fracminhash_k_zero_error ... ok [INFO] [stdout] test minhash::tests::jaccard_in_valid_range ... ok [INFO] [stdout] test minhash::tests::minhash_ani_identical_is_one ... ok [INFO] [stdout] test minhash::tests::minhash_containment_subset ... ok [INFO] [stdout] test minhash::tests::minhash_sketch_size_zero_error ... ok [INFO] [stdout] test motif::tests::pwm_from_aligned_sequences ... ok [INFO] [stdout] test minhash::tests::minhash_empty_sketch ... ok [INFO] [stdout] test motif::tests::pwm_information_content ... ok [INFO] [stdout] test minhash::tests::murmurhash3_deterministic ... ok [INFO] [stdout] test minhash::tests::fracminhash_scale_zero_error ... ok [INFO] [stdout] test motif::tests::pwm_scan_finds_motif ... ok [INFO] [stdout] test motif::tests::pwm_reverse_complement ... ok [INFO] [stdout] test minhash::tests::fracminhash_scales_properly ... ok [INFO] [stdout] test minhash::tests::minhash_k_zero_error ... ok [INFO] [stdout] test motif::tests::pwm_score_perfect_match ... ok [INFO] [stdout] test motif_io::tests::empty_input_returns_empty ... ok [INFO] [stdout] test motif_io::tests::malformed_jaspar_error ... ok [INFO] [stdout] test motif_io::tests::jaspar_round_trip ... ok [INFO] [stdout] test motif_io::tests::malformed_meme_error ... ok [INFO] [stdout] test minhash::tests::minhash_disjoint_jaccard_near_zero ... ok [INFO] [stdout] test minhash::tests::fracminhash_identical_jaccard_one ... ok [INFO] [stdout] test minhash::tests::minhash_identical_jaccard_one ... ok [INFO] [stdout] test minhash::tests::minhash_incompatible_k_error ... ok [INFO] [stdout] test minhash::tests::minhash_sketch_size_capped ... ok [INFO] [stdout] test motif_io::tests::multi_motif_transfac ... ok [INFO] [stdout] test motif_io::tests::similarity_identical ... ok [INFO] [stdout] test motif_io::tests::meme_round_trip ... ok [INFO] [stdout] test motif_io::tests::multi_motif_meme ... ok [INFO] [stdout] test motif_io::tests::transfac_round_trip ... ok [INFO] [stdout] test orf::tests::both_strands ... ok [INFO] [stdout] test orf::tests::overlapping_orfs_same_frame ... ok [INFO] [stdout] test orf::tests::reverse_strand_coordinates ... ok [INFO] [stdout] test orf::tests::configurable_start_stop_codons ... ok [INFO] [stdout] test orf::tests::empty_sequence ... ok [INFO] [stdout] test orf::tests::known_orf ... ok [INFO] [stdout] test motif_io::tests::similarity_different ... ok [INFO] [stdout] test orf::tests::min_length_filtering ... ok [INFO] [stdout] test orf::tests::multiple_orfs_different_frames ... ok [INFO] [stdout] test orf::tests::sequence_shorter_than_codon ... ok [INFO] [stdout] test orf::tests::no_orfs_no_atg ... ok [INFO] [stdout] test orf::tests::reverse_complement_basic ... ok [INFO] [stdout] test orf::tests::orf_extending_to_end ... ok [INFO] [stdout] test paired::tests::pair_into_reads ... ok [INFO] [stdout] test paired::tests::pair_creation_valid ... ok [INFO] [stdout] test paired::tests::pair_no_validation ... ok [INFO] [stdout] test paired::tests::pair_creation_unchecked ... ok [INFO] [stdout] test paired::tests::parse_interleaved_empty_file ... ok [INFO] [stdout] test paired::tests::parse_paired_empty_files ... ok [INFO] [stdout] test paired::tests::parse_interleaved_odd_count ... ok [INFO] [stdout] test paired::tests::parse_interleaved_valid ... ok [INFO] [stdout] test paired::tests::paired_stats ... ok [INFO] [stdout] test paired::tests::parse_paired_files_strict_validation ... ok [INFO] [stdout] test paired::tests::parse_paired_files_matching ... ok [INFO] [stdout] test paired::tests::pair_creation_invalid ... ok [INFO] [stdout] test paired::tests::interleave_unequal_files ... ok [INFO] [stdout] test paired::tests::parse_paired_files_no_validation ... ok [INFO] [stdout] test paired::tests::strip_suffix_illumina_name ... ok [INFO] [stdout] test paired::tests::strip_suffix_none ... ok [INFO] [stdout] test paired::tests::interleave_deinterleave_roundtrip ... ok [INFO] [stdout] test paired::tests::parse_paired_files_unequal_r1_longer ... ok [INFO] [stdout] test paired::tests::parse_paired_files_validation_failure ... ok [INFO] [stdout] test paired::tests::parse_paired_files_unequal_r2_longer ... ok [INFO] [stdout] test paired::tests::validate_relaxed_matching_slash ... ok [INFO] [stdout] test paired::tests::strip_suffix_short_name ... ok [INFO] [stdout] test paired::tests::parse_paired_single_pair ... ok [INFO] [stdout] test paired::tests::validate_relaxed_identical_names ... ok [INFO] [stdout] test paired::tests::strip_suffix_slash_1 ... ok [INFO] [stdout] test paired::tests::strip_suffix_slash_2 ... ok [INFO] [stdout] test paired::tests::strip_suffix_underscore_1 ... ok [INFO] [stdout] test paired::tests::validate_relaxed_matching_underscore ... ok [INFO] [stdout] test motif::tests::em_discovers_planted_motif ... ok [INFO] [stdout] test paired::tests::strip_suffix_underscore_2 ... ok [INFO] [stdout] test paired::tests::validate_relaxed_mismatch ... ok [INFO] [stdout] test pattern::tests::approx_matchers_agree_on_exact ... ok [INFO] [stdout] test paired::tests::validate_strict_missing_suffix_r1 ... ok [INFO] [stdout] test paired::tests::validate_strict_missing_suffix_r2 ... ok [INFO] [stdout] test paired::tests::validate_strict_valid ... ok [INFO] [stdout] test pattern::tests::bndm_pattern_too_long ... ok [INFO] [stdout] test pattern::tests::bndm_pattern_exactly_64 ... ok [INFO] [stdout] test paired::tests::validate_strict_wrong_suffix_order ... ok [INFO] [stdout] test pattern::tests::empty_pattern ... ok [INFO] [stdout] test pattern::tests::empty_text ... ok [INFO] [stdout] test pattern::tests::exact_match_at_end ... ok [INFO] [stdout] test paired::tests::write_empty_pairs ... ok [INFO] [stdout] test pattern::tests::exact_match_in_middle ... ok [INFO] [stdout] test pattern::tests::full_text_match ... ok [INFO] [stdout] test paired::tests::write_parse_roundtrip_separate ... ok [INFO] [stdout] test pattern::tests::exact_match_at_start ... ok [INFO] [stdout] test pattern::tests::myers_empty_text ... ok [INFO] [stdout] test paired::tests::write_parse_roundtrip_with_description ... ok [INFO] [stdout] test pattern::tests::myers_no_match_within_distance ... ok [INFO] [stdout] test paired::tests::write_parse_roundtrip_multiple_pairs ... ok [INFO] [stdout] test paired::tests::write_parse_roundtrip_interleaved ... ok [INFO] [stdout] test pattern::tests::myers_empty_pattern ... ok [INFO] [stdout] test pattern::tests::myers_single_insertion ... ok [INFO] [stdout] test pattern::tests::myers_single_substitution ... ok [INFO] [stdout] test pattern::tests::no_match ... ok [INFO] [stdout] test pattern::tests::pattern_longer_than_text ... ok [INFO] [stdout] test pattern::tests::overlapping_pattern ... ok [INFO] [stdout] test pattern::tests::protein_sequence ... ok [INFO] [stdout] test pattern::tests::shift_and_pattern_exactly_64 ... ok [INFO] [stdout] test pattern::tests::single_char_text_match ... ok [INFO] [stdout] test pattern::tests::single_char_text_no_match ... ok [INFO] [stdout] test pattern::tests::ukkonen_empty_pattern ... ok [INFO] [stdout] test pattern::tests::ukkonen_exact_match ... ok [INFO] [stdout] test pattern::tests::shift_and_pattern_too_long ... ok [INFO] [stdout] test pattern::tests::ukkonen_single_deletion ... ok [INFO] [stdout] test pattern::tests::ukkonen_no_match_within_distance ... ok [INFO] [stdout] test pattern::tests::ukkonen_single_insertion ... ok [INFO] [stdout] test pattern::tests::single_char_pattern ... ok [INFO] [stdout] test pattern::tests::ukkonen_single_substitution ... ok [INFO] [stdout] test protein_properties::tests::cf_poly_a_helix ... ok [INFO] [stdout] test protein_properties::tests::cf_poly_g_coil ... ok [INFO] [stdout] test protein_properties::tests::cf_poly_v_strand ... ok [INFO] [stdout] test protein_properties::tests::cf_short_error ... ok [INFO] [stdout] test protein_properties::tests::composition_all_alanine ... ok [INFO] [stdout] test protein_properties::tests::composition_each_aa_once ... ok [INFO] [stdout] test protein_properties::tests::disorder_scores_bounded ... ok [INFO] [stdout] test protein_properties::tests::disorder_window_zero_error ... ok [INFO] [stdout] test protein_properties::tests::disorder_hydrophobic_stretch ... ok [INFO] [stdout] test pattern::tests::multiple_occurrences ... ok [INFO] [stdout] test pattern::tests::myers_single_deletion ... ok [INFO] [stdout] test protein_properties::tests::composition_empty_error ... ok [INFO] [stdout] test protein_properties::tests::ext_trp_only ... ok [INFO] [stdout] test pattern::tests::ukkonen_empty_text ... ok [INFO] [stdout] test pattern::tests::myers_exact_match ... ok [INFO] [stdout] test protein_properties::tests::ext_no_absorbers ... ok [INFO] [stdout] test pattern::tests::exact_vs_approx_agreement ... ok [INFO] [stdout] test pattern::tests::myers_pattern_too_long ... ok [INFO] [stdout] test protein_properties::tests::ext_tyr_only ... ok [INFO] [stdout] test protein_properties::tests::gor_fractions_sum ... ok [INFO] [stdout] test protein_properties::tests::gravy_empty_error ... ok [INFO] [stdout] test protein_properties::tests::gravy_mixed ... ok [INFO] [stdout] test protein_properties::tests::gravy_poly_i ... ok [INFO] [stdout] test protein_properties::tests::hydro_even_window_error ... ok [INFO] [stdout] test protein_properties::tests::hydro_hopp_woods_sign ... ok [INFO] [stdout] test protein_properties::tests::hydro_poly_r_kd ... ok [INFO] [stdout] test protein_properties::tests::hydro_window_1_raw ... ok [INFO] [stdout] test protein_properties::tests::disorder_charged_stretch ... ok [INFO] [stdout] test protein_properties::tests::normalize_protein_invalid ... ok [INFO] [stdout] test protein_properties::tests::pi_poly_g_neutral ... ok [INFO] [stdout] test protein_properties::tests::pi_poly_k_basic ... ok [INFO] [stdout] test protein_properties::tests::pi_poly_d_acidic ... ok [INFO] [stdout] test protein_properties::tests::gor_helix_rich ... ok [INFO] [stdout] test protein_properties::tests::pi_known_protein ... ok [INFO] [stdout] test protein_properties::tests::gor_strand_rich ... ok [INFO] [stdout] test protein_properties::tests::gor_output_length ... ok [INFO] [stdout] test protein_properties::tests::hydro_poly_i_kd ... ok [INFO] [stdout] test pssm::tests::biased_counts_high_score_for_consensus ... ok [INFO] [stdout] test protein_properties::tests::normalize_protein_lowercase ... ok [INFO] [stdout] test protein_properties::tests::pi_single_residue ... ok [INFO] [stdout] test protein_properties::tests::normalize_protein_uppercase ... ok [INFO] [stdout] test pssm::tests::case_insensitive_scoring ... ok [INFO] [stdout] test pssm::tests::dna_mapping_cases ... ok [INFO] [stdout] test pssm::tests::error_wrong_seq_length ... ok [INFO] [stdout] test pssm::tests::information_content_uniform_is_zero ... ok [INFO] [stdout] test pssm::tests::error_unmapped_character ... ok [INFO] [stdout] test pssm::tests::scan_finds_positions ... ok [INFO] [stdout] test pssm::tests::scan_short_seq_returns_empty ... ok [INFO] [stdout] test pssm::tests::score_known_motif ... ok [INFO] [stdout] test pssm::tests::min_max_score_bounds ... ok [INFO] [stdout] test quality::tests::from_ascii_phred33 ... ok [INFO] [stdout] test pssm::tests::information_content_conserved_is_two_bits ... ok [INFO] [stdout] test pssm::tests::uniform_counts_scores_near_zero ... ok [INFO] [stdout] test pssm::tests::error_empty_counts ... ok [INFO] [stdout] test quality::tests::error_probability ... ok [INFO] [stdout] test quality::tests::roundtrip_ascii ... ok [INFO] [stdout] test pssm::tests::error_zero_background ... ok [INFO] [stdout] test pssm::tests::protein_mapping_cases ... ok [INFO] [stdout] test quality::tests::scored_trait ... ok [INFO] [stdout] test read_sim::tests::quality_scores_valid_phred33 ... ok [INFO] [stdout] test read_sim::tests::reads_are_valid_dna ... ok [INFO] [stdout] test restriction::tests::ecori_cuts_correctly ... ok [INFO] [stdout] test restriction::tests::blunt_end_enzyme ... ok [INFO] [stdout] test quality::tests::stats ... ok [INFO] [stdout] test read_sim::tests::zero_error_rate_reads_match_reference ... ok [INFO] [stdout] test restriction::tests::common_enzymes_nonempty ... ok [INFO] [stdout] test read_sim::tests::read_count_proportional_to_coverage ... ok [INFO] [stdout] test read_sim::tests::paired_produces_both_mates ... ok [INFO] [stdout] test rna_structure::tests::bp_distance_completely_different ... ok [INFO] [stdout] test rna_structure::tests::bp_distance_symmetric ... ok [INFO] [stdout] test read_sim::tests::read_length_matches_config ... ok [INFO] [stdout] test restriction::tests::iupac_degenerate_match ... ok [INFO] [stdout] test rna_structure::tests::dot_bracket_invalid_char ... ok [INFO] [stdout] test restriction::tests::no_sites_single_fragment ... ok [INFO] [stdout] test rna_structure::tests::bp_distance_different_lengths ... ok [INFO] [stdout] test rna_structure::tests::bp_distance_identical ... ok [INFO] [stdout] test rna_structure::tests::dot_bracket_roundtrip ... ok [INFO] [stdout] test rna_structure::tests::can_pair_valid ... ok [INFO] [stdout] test rna_structure::tests::dot_bracket_with_unpaired ... ok [INFO] [stdout] test rna_structure::tests::dot_bracket_empty ... ok [INFO] [stdout] test rna_structure::tests::dot_bracket_base_pairs ... ok [INFO] [stdout] test rna_structure::tests::can_pair_invalid ... ok [INFO] [stdout] test rna_structure::tests::dot_bracket_simple ... ok [INFO] [stdout] test rna_structure::tests::mountain_distance_different_lengths ... ok [INFO] [stdout] test rna_structure::tests::dot_bracket_unmatched_open ... ok [INFO] [stdout] test rna_structure::tests::dot_bracket_unmatched_close ... ok [INFO] [stdout] test rna_structure::tests::mccaskill_strong_stem ... ok [INFO] [stdout] test rna_structure::tests::mountain_distance_identical ... ok [INFO] [stdout] test rna_structure::tests::mccaskill_deterministic ... ok [INFO] [stdout] test rna_structure::tests::mccaskill_empty ... ok [INFO] [stdout] test rna_structure::tests::mccaskill_invalid_temperature ... ok [INFO] [stdout] test rna_structure::tests::mccaskill_no_pairs ... ok [INFO] [stdout] test rna_structure::tests::mccaskill_short_sequence ... ok [INFO] [stdout] test rna_structure::tests::mccaskill_temperature_effect ... ok [INFO] [stdout] test rna_structure::tests::mountain_distance_symmetric ... ok [INFO] [stdout] test rna_structure::tests::normalize_rna_lowercase ... ok [INFO] [stdout] test rna_structure::tests::nussinov_empty ... ok [INFO] [stdout] test rna_structure::tests::nussinov_gcaucg ... ok [INFO] [stdout] test rna_structure::tests::nussinov_lowercase_and_dna ... ok [INFO] [stdout] test rna_structure::tests::nussinov_no_pairs ... ok [INFO] [stdout] test rna_structure::tests::normalize_rna_invalid ... ok [INFO] [stdout] test rna_structure::tests::mccaskill_probabilities_sum ... ok [INFO] [stdout] test rna_structure::tests::zuker_empty ... ok [INFO] [stdout] test rna_structure::tests::normalize_rna_dna_input ... ok [INFO] [stdout] test rna_structure::tests::nussinov_perfect_stem ... ok [INFO] [stdout] test rna_structure::tests::zuker_energy_nonpositive ... ok [INFO] [stdout] test rna_structure::tests::nussinov_structure_valid ... ok [INFO] [stdout] test rna_structure::tests::nussinov_short_sequence ... ok [INFO] [stdout] test rna_structure::tests::stacking_energy_values ... ok [INFO] [stdout] test rna_structure::tests::zuker_gc_stronger_than_au ... ok [INFO] [stdout] test rna_structure::tests::nussinov_min_loop_enforced ... ok [INFO] [stdout] test rna_structure::tests::zuker_no_structure ... ok [INFO] [stdout] test protein_properties::tests::ext_cystine_contribution ... ok [INFO] [stdout] test rna_structure::tests::zuker_simple_hairpin ... ok [INFO] [stdout] test rna_structure::tests::zuker_valid_structure ... ok [INFO] [stdout] test seq::tests::as_bytes_uppercase ... ok [INFO] [stdout] test seq::tests::rejects_invalid_bytes ... ok [INFO] [stdout] test seq::tests::content_addressable_deterministic ... ok [INFO] [stdout] test rna_structure::tests::zuker_short_sequence ... ok [INFO] [stdout] test seq::tests::empty_sequence_ok ... ok [INFO] [stdout] test seq::tests::stores_uppercase ... ok [INFO] [stdout] test rna_structure::tests::mountain_distance_nonnegative ... ok [INFO] [stdout] test seq::tests::deref_to_slice ... ok [INFO] [stdout] test suffix::tests::build_empty_text ... ok [INFO] [stdout] test suffix::tests::build_repeated_chars ... ok [INFO] [stdout] test suffix::tests::build_mississippi ... ok [INFO] [stdout] test suffix::tests::search_full_text ... ok [INFO] [stdout] test suffix::tests::search_banana_a ... ok [INFO] [stdout] test suffix::tests::search_empty_pattern ... ok [INFO] [stdout] test suffix::tests::build_banana ... ok [INFO] [stdout] test taxonomy::tests::classify_ambiguous_lca ... ok [INFO] [stdout] test suffix::tests::build_dna_sequence ... ok [INFO] [stdout] test taxonomy::tests::taxonomy_tree_construction ... ok [INFO] [stdout] test suffix::tests::search_banana_ban ... ok [INFO] [stdout] test taxonomy::tests::lca_same_node ... ok [INFO] [stdout] test taxonomy::tests::classify_exact_match ... ok [INFO] [stdout] test suffix::tests::search_no_match ... ok [INFO] [stdout] test taxonomy::tests::lca_sibling_species ... ok [INFO] [stdout] test trim::paired_tests::paired_batch_stats_empty ... ok [INFO] [stdout] test trim::paired_tests::paired_both_fail ... ok [INFO] [stdout] test trim::paired_tests::paired_both_pass ... ok [INFO] [stdout] test trim::paired_tests::paired_batch_drop_both ... ok [INFO] [stdout] test trim::paired_tests::paired_batch_stats_bases ... ok [INFO] [stdout] test trim::paired_tests::paired_batch_stats ... ok [INFO] [stdout] test suffix::tests::build_single_char ... ok [INFO] [stdout] test suffix::tests::search_banana_ana ... ok [INFO] [stdout] test trim::paired_tests::paired_full_pipeline ... ok [INFO] [stdout] test suffix::tests::search_longer_than_text ... ok [INFO] [stdout] test trim::paired_tests::paired_r2_fails_keep_first ... ok [INFO] [stdout] test trim::paired_tests::paired_r1_fails_keep_second ... ok [INFO] [stdout] test trim::paired_tests::paired_r1_fails_drop_both ... ok [INFO] [stdout] test trim::tests::adapter_no_adapter ... ok [INFO] [stdout] test trim::paired_tests::paired_r2_fails_drop_both ... ok [INFO] [stdout] test trim::tests::adapter_one_mismatch ... ok [INFO] [stdout] test trim::tests::adapter_exact_match ... ok [INFO] [stdout] test trim::tests::adapter_partial_3prime ... ok [INFO] [stdout] test trim::tests::adapter_too_many_mismatches ... ok [INFO] [stdout] test trim::tests::apply_trim_basic ... ok [INFO] [stdout] test trim::tests::bwa_clean_read ... ok [INFO] [stdout] test trim::tests::bwa_3prime_ramp_down ... ok [INFO] [stdout] test trim::tests::bwa_all_low ... ok [INFO] [stdout] test trim::tests::empty_sequence ... ok [INFO] [stdout] test trim::tests::entropy_dinucleotide ... ok [INFO] [stdout] test trim::tests::entropy_equiprobable ... ok [INFO] [stdout] test trim::tests::entropy_empty ... ok [INFO] [stdout] test trim::tests::entropy_homopolymer ... ok [INFO] [stdout] test trim::tests::bwa_isolated_low_base ... ok [INFO] [stdout] test trim::tests::filter_complexity_pass ... ok [INFO] [stdout] test trim::tests::apply_trim_empty_range ... ok [INFO] [stdout] test trim::tests::filter_complexity_fail ... ok [INFO] [stdout] test trim::tests::filter_quality_fail ... ok [INFO] [stdout] test trim::tests::filter_quality_pass ... ok [INFO] [stdout] test trim::tests::filter_length_pass ... ok [INFO] [stdout] test trim::tests::intersect_non_overlapping ... ok [INFO] [stdout] test trim::tests::filter_length_too_long ... ok [INFO] [stdout] test trim::tests::pipeline_everything_filtered ... ok [INFO] [stdout] test trim::tests::leading_no_trim ... ok [INFO] [stdout] test trim::tests::filter_length_too_short ... ok [INFO] [stdout] test trim::tests::leading_partial ... ok [INFO] [stdout] test trim::tests::intersect_overlapping ... ok [INFO] [stdout] test trim::tests::leading_trailing_combined ... ok [INFO] [stdout] test trim::tests::pipeline_batch_stats ... ok [INFO] [stdout] test trim::tests::pipeline_full ... ok [INFO] [stdout] test trim::tests::pipeline_noop ... ok [INFO] [stdout] test trim::tests::sliding_window_all_high ... ok [INFO] [stdout] test trim::tests::sliding_window_window_1 ... ok [INFO] [stdout] test trim::tests::sliding_window_last_window_drop ... ok [INFO] [stdout] test trim::tests::single_base ... ok [INFO] [stdout] test twobit::tests::compact_storage ... ok [INFO] [stdout] test trim::tests::uniform_quality ... ok [INFO] [stdout] test trim::tests::sliding_window_mid_drop ... ok [INFO] [stdout] test twobit::tests::complement_basic ... ok [INFO] [stdout] test trim::tests::sliding_window_immediate_drop ... ok [INFO] [stdout] test twobit::tests::complement_empty ... ok [INFO] [stdout] test twobit::tests::complement_involution ... ok [INFO] [stdout] test twobit::tests::complement_non_aligned ... ok [INFO] [stdout] test twobit::tests::encode_case_insensitive ... ok [INFO] [stdout] test twobit::tests::encode_decode_all_bases ... ok [INFO] [stdout] test twobit::tests::encode_decode_non_multiple_of_four ... ok [INFO] [stdout] test twobit::tests::get_individual_bases ... ok [INFO] [stdout] test twobit::tests::encode_decode_roundtrip ... ok [INFO] [stdout] test twobit::tests::kmer_edge_cases ... ok [INFO] [stdout] test twobit::tests::get_bases_non_aligned ... ok [INFO] [stdout] test twobit::tests::encode_non_dna_error ... ok [INFO] [stdout] test twobit::tests::kmer_extraction ... ok [INFO] [stdout] test twobit::tests::kmer_max_k32 ... ok [INFO] [stdout] test twobit::tests::long_sequence_roundtrip ... ok [INFO] [stdout] test types::tests::dna_to_rna ... ok [INFO] [stdout] test trim::tests::trailing_no_trim ... ok [INFO] [stdout] test types::tests::gc_content_basic ... ok [INFO] [stdout] test types::tests::gc_content_empty ... ok [INFO] [stdout] test types::tests::revcomp_asymmetric ... ok [INFO] [stdout] test types::tests::revcomp_iupac_ambiguity ... ok [INFO] [stdout] test types::tests::revcomp_palindromic ... ok [INFO] [stdout] test types::tests::rna_to_dna ... ok [INFO] [stdout] test types::tests::transcription_roundtrip ... ok [INFO] [stdout] test types::tests::translate_aug_uuu_uaa ... ok [INFO] [stdout] test types::tests::translate_incomplete_codon_ignored ... ok [INFO] [stdout] test types::tests::translate_stops_at_first_stop ... ok [INFO] [stdout] test trim::tests::trailing_partial ... ok [INFO] [stdout] test twobit::tests::complement_all_same ... ok [INFO] [stdout] test twobit::tests::empty_sequence ... ok [INFO] [stdout] test trim::proptests::intersect_valid_subrange ... ok [INFO] [stdout] test codon::proptests::cai_in_unit_interval ... ok [INFO] [stdout] test trim::paired_proptests::paired_trimmed_never_longer ... ok [INFO] [stdout] test trim::proptests::trimmed_never_longer ... ok [INFO] [stdout] test masking::proptests::mask_preserves_length ... ok [INFO] [stdout] test paired::proptests::roundtrip_write_parse ... ok [INFO] [stdout] test paired::proptests::interleave_deinterleave_identity ... ok [INFO] [stdout] test types::proptests::reverse_complement_involution ... ok [INFO] [stdout] test types::proptests::gc_content_in_unit_interval ... ok [INFO] [stdout] test types::proptests::reverse_complement_preserves_length ... ok [INFO] [stdout] test types::proptests::transcribe_reverse_transcribe_roundtrips ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 474 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 7.65s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/cyanea_stats-505caef91e306c17) [INFO] [stdout] [INFO] [stdout] running 384 tests [INFO] [stdout] test bayesian::tests::dirichlet_ln_pdf_invalid ... ok [INFO] [stdout] test bayesian::tests::beta_cdf_midpoint ... ok [INFO] [stdout] test bayesian::tests::beta_pdf_at_mode ... ok [INFO] [stdout] test bayesian::tests::dirichlet_symmetric_mean ... ok [INFO] [stdout] test bayesian::tests::beta_conjugacy ... ok [INFO] [stdout] test bayesian::tests::gamma_cdf ... ok [INFO] [stdout] test bayesian::tests::gamma_conjugacy_batch ... ok [INFO] [stdout] test bayesian::tests::gamma_conjugacy_poisson ... ok [INFO] [stdout] test bayesian::tests::dirichlet_invalid ... ok [INFO] [stdout] test bayesian::tests::dirichlet_conjugacy_multinomial ... ok [INFO] [stdout] test bayesian::tests::dirichlet_ln_pdf ... ok [INFO] [stdout] test bayesian::tests::beta_cdf_boundaries ... ok [INFO] [stdout] test bayesian::tests::gamma_invalid ... ok [INFO] [stdout] test bayesian::tests::normal_conjugate_precision_shrinkage ... ok [INFO] [stdout] test bayesian::tests::normal_conjugate_single_update ... ok [INFO] [stdout] test combinatorics::tests::binomial_k_greater_than_n ... ok [INFO] [stdout] test bayesian::tests::gamma_mean_variance ... ok [INFO] [stdout] test bayesian::tests::normal_conjugate_empty_batch ... ok [INFO] [stdout] test bayesian::tests::normal_conjugate_invalid ... ok [INFO] [stdout] test combinatorics::tests::combinations_count ... ok [INFO] [stdout] test combinatorics::tests::combinations_k_equals_n ... ok [INFO] [stdout] test combinatorics::tests::combinations_k_greater_than_n ... ok [INFO] [stdout] test combinatorics::tests::combinations_k_zero ... ok [INFO] [stdout] test bayesian::tests::normal_conjugate_batch_update ... ok [INFO] [stdout] test combinatorics::tests::combinations_values ... ok [INFO] [stdout] test combinatorics::tests::factorial_overflow ... ok [INFO] [stdout] test combinatorics::tests::factorial_small ... ok [INFO] [stdout] test combinatorics::tests::ln_binomial_accuracy ... ok [INFO] [stdout] test combinatorics::tests::ln_binomial_invalid ... ok [INFO] [stdout] test combinatorics::tests::ln_factorial_matches_exact ... ok [INFO] [stdout] test combinatorics::tests::ln_multinomial_accuracy ... ok [INFO] [stdout] test combinatorics::tests::ln_multinomial_invalid ... ok [INFO] [stdout] test combinatorics::tests::ln_permutations_accuracy ... ok [INFO] [stdout] test combinatorics::tests::multinomial_bad_sum ... ok [INFO] [stdout] test combinatorics::tests::multinomial_known ... ok [INFO] [stdout] test combinatorics::tests::permutations_k_greater_than_n ... ok [INFO] [stdout] test combinatorics::tests::permutations_known ... ok [INFO] [stdout] test correction::tests::bh_clamp ... ok [INFO] [stdout] test correction::tests::bh_known ... ok [INFO] [stdout] test correction::tests::bh_monotonicity ... ok [INFO] [stdout] test correction::tests::bonferroni_basic ... ok [INFO] [stdout] test correction::tests::bonferroni_clamp ... ok [INFO] [stdout] test correction::tests::correction_empty ... ok [INFO] [stdout] test correction::tests::correction_invalid_p ... ok [INFO] [stdout] test correction::tests::correction_single ... ok [INFO] [stdout] test correlation::tests::correlation_matrix_summary ... ok [INFO] [stdout] test correlation::tests::correlation_matrix_diagonal ... ok [INFO] [stdout] test correlation::tests::pearson_constant_series ... ok [INFO] [stdout] test correlation::tests::pearson_length_mismatch ... ok [INFO] [stdout] test correlation::tests::pearson_perfect_negative ... ok [INFO] [stdout] test correlation::tests::pearson_zero_correlation ... ok [INFO] [stdout] test correlation::tests::spearman_monotonic ... ok [INFO] [stdout] test correlation::tests::spearman_reverse ... ok [INFO] [stdout] test correlation::tests::pearson_perfect_positive ... ok [INFO] [stdout] test correlation::tests::pearson_too_short ... ok [INFO] [stdout] test descriptive::tests::iqr_basic ... ok [INFO] [stdout] test descriptive::tests::describe_known_data ... ok [INFO] [stdout] test descriptive::tests::describe_single ... ok [INFO] [stdout] test descriptive::tests::median_even ... ok [INFO] [stdout] test descriptive::tests::describe_empty ... ok [INFO] [stdout] test descriptive::tests::mean_empty ... ok [INFO] [stdout] test descriptive::tests::describe_skewness_symmetric ... ok [INFO] [stdout] test descriptive::tests::quantile_invalid_q ... ok [INFO] [stdout] test descriptive::tests::variance_population ... ok [INFO] [stdout] test descriptive::tests::variance_sample ... ok [INFO] [stdout] test descriptive::tests::variance_too_few ... ok [INFO] [stdout] test diffexpr::tests::dispersion_overdispersed ... ok [INFO] [stdout] test bayesian::tests::beta_invalid ... ok [INFO] [stdout] test combinatorics::tests::binomial_known_values ... ok [INFO] [stdout] test correlation::tests::correlation_matrix_symmetric ... ok [INFO] [stdout] test descriptive::tests::median_odd ... ok [INFO] [stdout] test diffexpr::tests::error_condition_length ... ok [INFO] [stdout] test diffexpr::tests::error_too_few_per_group ... ok [INFO] [stdout] test diffexpr::tests::dispersion_poisson_like ... ok [INFO] [stdout] test diffexpr::tests::error_dimension_mismatch ... ok [INFO] [stdout] test diffexpr::tests::nb_detects_downregulated ... ok [INFO] [stdout] test diffexpr::tests::nb_results_sorted ... ok [INFO] [stdout] test diffexpr::tests::nb_padj_ge_pvalue ... ok [INFO] [stdout] test diffexpr::tests::nb_unchanged_genes_high_p ... ok [INFO] [stdout] test diffexpr::tests::volcano_clamps_neg_log10 ... ok [INFO] [stdout] test diffexpr::tests::nb_detects_upregulated ... ok [INFO] [stdout] test descriptive::tests::mad_basic ... ok [INFO] [stdout] test diffexpr::tests::wilcoxon_matches_direct_mwu ... ok [INFO] [stdout] test distribution::tests::betai_boundaries ... ok [INFO] [stdout] test distribution::tests::betai_invalid_x ... ok [INFO] [stdout] test distribution::tests::betai_symmetry ... ok [INFO] [stdout] test descriptive::tests::summarizable_impl ... ok [INFO] [stdout] test distribution::tests::binomial_cdf ... ok [INFO] [stdout] test distribution::tests::binomial_cdf_boundaries ... ok [INFO] [stdout] test diffexpr::tests::error_single_group ... ok [INFO] [stdout] test distribution::tests::betai_uniform ... ok [INFO] [stdout] test diffexpr::tests::volcano_thresholds ... ok [INFO] [stdout] test distribution::tests::binomial_invalid ... ok [INFO] [stdout] test diffexpr::tests::wilcoxon_detects_de ... ok [INFO] [stdout] test distribution::tests::binomial_pmf_sum ... ok [INFO] [stdout] test distribution::tests::chi_squared_cdf_at_zero ... ok [INFO] [stdout] test distribution::tests::binomial_mean_variance ... ok [INFO] [stdout] test distribution::tests::chi_squared_cdf_df1 ... ok [INFO] [stdout] test distribution::tests::binomial_pmf ... ok [INFO] [stdout] test distribution::tests::erf_negative_symmetry ... ok [INFO] [stdout] test distribution::tests::erf_zero ... ok [INFO] [stdout] test distribution::tests::f_dist_cdf_at_zero ... ok [INFO] [stdout] test distribution::tests::chi_squared_invalid ... ok [INFO] [stdout] test distribution::tests::f_dist_cdf_known ... ok [INFO] [stdout] test distribution::tests::chi_squared_mean_variance ... ok [INFO] [stdout] test distribution::tests::chi_squared_cdf_known_values ... ok [INFO] [stdout] test distribution::tests::erf_one ... ok [INFO] [stdout] test distribution::tests::f_dist_invalid ... ok [INFO] [stdout] test distribution::tests::gammainc_invalid ... ok [INFO] [stdout] test distribution::tests::gammainc_large_x ... ok [INFO] [stdout] test distribution::tests::ln_gamma_half ... ok [INFO] [stdout] test distribution::tests::gammainc_exponential ... ok [INFO] [stdout] test distribution::tests::ln_gamma_integers ... ok [INFO] [stdout] test distribution::tests::gammainc_half_integer ... ok [INFO] [stdout] test distribution::tests::nb_cdf_consistency ... ok [INFO] [stdout] test distribution::tests::gammainc_zero ... ok [INFO] [stdout] test distribution::tests::f_dist_mean ... ok [INFO] [stdout] test distribution::tests::nb_from_mean_dispersion_roundtrip ... ok [INFO] [stdout] test distribution::tests::nb_invalid_params ... ok [INFO] [stdout] test distribution::tests::nb_pdf_non_integer_is_zero ... ok [INFO] [stdout] test distribution::tests::nb_pmf_known_values ... ok [INFO] [stdout] test distribution::tests::normal_standard_cdf ... ok [INFO] [stdout] test distribution::tests::nb_deseq2_parameterization ... ok [INFO] [stdout] test distribution::tests::nb_pmf_sums_near_one ... ok [INFO] [stdout] test distribution::tests::nb_mean_variance ... ok [INFO] [stdout] test distribution::tests::normal_invalid_sigma ... ok [INFO] [stdout] test distribution::tests::nb_cdf_negative_is_zero ... ok [INFO] [stdout] test distribution::tests::normal_standard_pdf_at_zero ... ok [INFO] [stdout] test distribution::tests::poisson_pmf ... ok [INFO] [stdout] test diversity::tests::alpha_rarefaction_multiple_samples ... ok [INFO] [stdout] test diversity::tests::hill_monotone_non_increasing ... ok [INFO] [stdout] test distribution::tests::poisson_cdf ... ok [INFO] [stdout] test diversity::tests::hill_q0_is_richness ... ok [INFO] [stdout] test distribution::tests::poisson_invalid_lambda ... ok [INFO] [stdout] test diversity::tests::bray_curtis_disjoint_is_one ... ok [INFO] [stdout] test diversity::tests::chao1_all_abundant ... ok [INFO] [stdout] test diversity::tests::jaccard_disjoint_is_one ... ok [INFO] [stdout] test diversity::tests::jaccard_identical_is_zero ... ok [INFO] [stdout] test diversity::tests::bray_curtis_identical_is_zero ... ok [INFO] [stdout] test diversity::tests::jaccard_symmetric ... ok [INFO] [stdout] test diversity::tests::rarefaction_monotonic ... ok [INFO] [stdout] test diversity::tests::weighted_jaccard_disjoint_is_one ... ok [INFO] [stdout] test diversity::tests::hill_q1_is_exp_shannon ... ok [INFO] [stdout] test diversity::tests::hill_q2_is_inv_simpson ... ok [INFO] [stdout] test diversity::tests::jaccard_matrix_symmetric ... ok [INFO] [stdout] test effect_size::tests::cohens_d_large_effect ... ok [INFO] [stdout] test effect_size::tests::cohens_d_small_effect ... ok [INFO] [stdout] test effect_size::tests::cohens_d_zero_difference ... ok [INFO] [stdout] test effect_size::tests::eta_squared_no_effect ... ok [INFO] [stdout] test effect_size::tests::eta_squared_range ... ok [INFO] [stdout] test effect_size::tests::odds_ratio_no_association ... ok [INFO] [stdout] test effect_size::tests::odds_ratio_zero_denominator ... ok [INFO] [stdout] test diversity::tests::weighted_jaccard_identical_is_zero ... ok [INFO] [stdout] test effect_size::tests::eta_squared_strong_effect ... ok [INFO] [stdout] test effect_size::tests::odds_ratio_strong_positive ... ok [INFO] [stdout] test effect_size::tests::relative_risk_doubled ... ok [INFO] [stdout] test diversity::tests::simpson_single_species_is_one ... ok [INFO] [stdout] test effect_size::tests::cohens_d_too_few ... ok [INFO] [stdout] test diffexpr::tests::nb_log2fc_direction ... ok [INFO] [stdout] test diversity::tests::shannon_uniform_is_ln_s ... ok [INFO] [stdout] test effect_size::tests::relative_risk_zero_row ... ok [INFO] [stdout] test enrichment::tests::go_annotation_filter_namespace ... ok [INFO] [stdout] test enrichment::tests::go_annotation_from_entries_merges ... ok [INFO] [stdout] test effect_size::tests::relative_risk_no_difference ... ok [INFO] [stdout] test enrichment::tests::go_annotation_new_empty_error ... ok [INFO] [stdout] test enrichment::tests::go_annotation_terms_for_gene ... ok [INFO] [stdout] test enrichment::tests::go_annotation_n_terms_and_n_genes ... ok [INFO] [stdout] test enrichment::tests::go_annotation_from_entries_empty_error ... ok [INFO] [stdout] test enrichment::tests::go_enrichment_no_terms_pass_error ... ok [INFO] [stdout] test enrichment::tests::go_enrichment_size_filter_max ... ok [INFO] [stdout] test enrichment::tests::go_enrichment_size_filter_min ... ok [INFO] [stdout] test enrichment::tests::go_enrichment_bh_correction ... ok [INFO] [stdout] test enrichment::tests::go_enrichment_basic ... ok [INFO] [stdout] test enrichment::tests::go_enrichment_namespace_filter ... ok [INFO] [stdout] test enrichment::tests::gsea_error_empty_gene_sets ... ok [INFO] [stdout] test enrichment::tests::gsea_error_mismatched_lengths ... ok [INFO] [stdout] test enrichment::tests::gsea_error_zero_permutations ... ok [INFO] [stdout] test enrichment::tests::go_enrichment_sorted_by_pvalue ... ok [INFO] [stdout] test enrichment::tests::gsea_error_empty_genes ... ok [INFO] [stdout] test descriptive::tests::mean_basic ... ok [INFO] [stdout] test enrichment::tests::go_annotation_filter_namespace_empty_error ... ok [INFO] [stdout] test enrichment::tests::gsea_no_overlap_with_list ... ok [INFO] [stdout] test enrichment::tests::go_enrichment_min_gt_max_error ... ok [INFO] [stdout] test enrichment::tests::gsea_leading_edge_size ... ok [INFO] [stdout] test enrichment::tests::gsea_single_gene_set_single_gene ... ok [INFO] [stdout] test enrichment::tests::gsea_pvalue_in_range ... ok [INFO] [stdout] test enrichment::tests::gsea_deterministic_with_fixed_seed ... ok [INFO] [stdout] test enrichment::tests::ora_basic_enrichment ... ok [INFO] [stdout] test enrichment::tests::ora_bh_correction_applied ... ok [INFO] [stdout] test enrichment::tests::ora_complete_overlap ... ok [INFO] [stdout] test enrichment::tests::ora_duplicate_genes_deduplicated ... ok [INFO] [stdout] test enrichment::tests::ora_empty_significant ... ok [INFO] [stdout] test enrichment::tests::ora_error_empty_gene_sets ... ok [INFO] [stdout] test enrichment::tests::gsea_weight_one_classic ... ok [INFO] [stdout] test enrichment::tests::ora_error_zero_universe ... ok [INFO] [stdout] test enrichment::tests::ora_error_index_too_large ... ok [INFO] [stdout] test enrichment::tests::gsea_unweighted ... ok [INFO] [stdout] test enrichment::tests::ora_expected_overlap ... ok [INFO] [stdout] test enrichment::tests::ora_no_overlap ... ok [INFO] [stdout] test enrichment::tests::xorshift_different_seeds ... ok [INFO] [stdout] test enrichment::tests::ora_error_gene_set_index_too_large ... ok [INFO] [stdout] test bayesian::tests::beta_uniform_prior ... ok [INFO] [stdout] test enrichment::tests::ora_sorted_by_pvalue ... ok [INFO] [stdout] test descriptive::tests::quantile_basic ... ok [INFO] [stdout] test enrichment::tests::xorshift_deterministic ... ok [INFO] [stdout] test multivariate::tests::amova_phi_in_range ... ok [INFO] [stdout] test multivariate::tests::anosim_too_few_groups_error ... ok [INFO] [stdout] test multivariate::tests::anosim_r_in_valid_range ... ok [INFO] [stdout] test multivariate::tests::bioenv_dimension_mismatch_error ... ok [INFO] [stdout] test multivariate::tests::amova_too_few_groups_error ... ok [INFO] [stdout] test multivariate::tests::bioenv_finds_correlated_variable ... ok [INFO] [stdout] test multivariate::tests::bioenv_single_variable ... ok [INFO] [stdout] test multivariate::tests::mantel_identical_matrices_correlation_one ... ok [INFO] [stdout] test multivariate::tests::bioenv_zero_vars_error ... ok [INFO] [stdout] test multivariate::tests::anosim_separated_groups ... ok [INFO] [stdout] test multivariate::tests::mantel_size_mismatch_error ... ok [INFO] [stdout] test multivariate::tests::permanova_mismatched_error ... ok [INFO] [stdout] test multivariate::tests::amova_ss_additivity ... ok [INFO] [stdout] test multivariate::tests::mantel_pearson_vs_spearman ... ok [INFO] [stdout] test multivariate::tests::mantel_invalid_method_error ... ok [INFO] [stdout] test multivariate::tests::permanova_r_squared_in_range ... ok [INFO] [stdout] test multivariate::tests::permanova_too_few_groups_error ... ok [INFO] [stdout] test normalization::tests::cpm_column_sums_to_1m ... ok [INFO] [stdout] test normalization::tests::dimension_mismatch ... ok [INFO] [stdout] test enrichment::tests::gsea_genes_at_bottom ... ok [INFO] [stdout] test normalization::tests::fpkm_known_values ... ok [INFO] [stdout] test enrichment::tests::gsea_genes_at_top ... ok [INFO] [stdout] test normalization::tests::empty_matrix ... ok [INFO] [stdout] test normalization::tests::normalize_roundtrip ... ok [INFO] [stdout] test normalization::tests::size_factors_doubled_library ... ok [INFO] [stdout] test normalization::tests::size_factors_equal_libraries ... ok [INFO] [stdout] test normalization::tests::size_factors_skip_zeros ... ok [INFO] [stdout] test normalization::tests::tpm_length_normalization ... ok [INFO] [stdout] test normalization::tests::tpm_column_sums_to_1m ... ok [INFO] [stdout] test null_model::tests::wf_one_freq_stays_one ... ok [INFO] [stdout] test null_model::tests::permutation_null_returns_correct_count ... ok [INFO] [stdout] test null_model::tests::bootstrap_null_returns_correct_count ... ok [INFO] [stdout] test ordination::tests::cca_zero_species_error ... ok [INFO] [stdout] test ordination::tests::cca_basic_gradient ... ok [INFO] [stdout] test ordination::tests::double_center_row_col_means_zero ... ok [INFO] [stdout] test normalization::tests::fpkm_to_tpm_relationship ... ok [INFO] [stdout] test ordination::tests::isotonic_single_pool ... ok [INFO] [stdout] test null_model::tests::wf_zero_freq_stays_zero ... ok [INFO] [stdout] test ordination::tests::nmds_too_few_samples_error ... ok [INFO] [stdout] test ordination::tests::nmds_zero_dims_error ... ok [INFO] [stdout] test ordination::tests::pcoa_euclidean_recovers_structure ... ok [INFO] [stdout] test ordination::tests::pcoa_no_negative_eigenvalues_for_euclidean ... ok [INFO] [stdout] test ordination::tests::nmds_stress_decreases ... ok [INFO] [stdout] test ordination::tests::pcoa_non_square_error ... ok [INFO] [stdout] test ordination::tests::pcoa_proportion_explained_sums_reasonable ... ok [INFO] [stdout] test ordination::tests::nmds_deterministic_with_same_seed ... ok [INFO] [stdout] test ordination::tests::isotonic_already_ordered ... ok [INFO] [stdout] test multivariate::tests::anosim_uniform_not_significant ... ok [INFO] [stdout] test enrichment::tests::gsea_uniform_distribution ... ok [INFO] [stdout] test multivariate::tests::permanova_separated_groups_significant ... ok [INFO] [stdout] test ordination::tests::pcoa_too_few_samples_error ... ok [INFO] [stdout] test ordination::tests::procrustes_identical_m2_zero ... ok [INFO] [stdout] test ordination::tests::procrustes_m2_in_range ... ok [INFO] [stdout] test ordination::tests::procrustes_scaled_low_m2 ... ok [INFO] [stdout] test ordination::tests::procrustes_mismatched_samples_error ... ok [INFO] [stdout] test ordination::tests::procrustes_too_few_samples_error ... ok [INFO] [stdout] test ordination::tests::rda_dimension_mismatch_error ... ok [INFO] [stdout] test multivariate::tests::permanova_uniform_not_significant ... ok [INFO] [stdout] test ordination::tests::rda_linear_relationship ... ok [INFO] [stdout] test ordination::tests::rda_no_relationship ... ok [INFO] [stdout] test multivariate::tests::amova_separated_groups_significant ... ok [INFO] [stdout] test popgen::tests::af_all_hom_ref ... ok [INFO] [stdout] test popgen::tests::af_consistency ... ok [INFO] [stdout] test popgen::tests::af_basic ... ok [INFO] [stdout] test popgen::tests::af_with_missing ... ok [INFO] [stdout] test popgen::tests::af_invalid_genotype ... ok [INFO] [stdout] test ordination::tests::rda_too_few_sites_error ... ok [INFO] [stdout] test popgen::tests::af_all_het ... ok [INFO] [stdout] test popgen::tests::af_empty_error ... ok [INFO] [stdout] test popgen::tests::all_missing_error ... ok [INFO] [stdout] test popgen::tests::diversity_known_theta_w ... ok [INFO] [stdout] test popgen::tests::fst_error_empty ... ok [INFO] [stdout] test popgen::tests::diversity_zero_segregating ... ok [INFO] [stdout] test popgen::tests::fst_hudson_known ... ok [INFO] [stdout] test popgen::tests::fst_fully_differentiated ... ok [INFO] [stdout] test popgen::tests::fst_three_populations ... ok [INFO] [stdout] test popgen::tests::hwe_excess_heterozygosity ... ok [INFO] [stdout] test popgen::tests::fst_identical_populations ... ok [INFO] [stdout] test popgen::tests::hwe_monomorphic_error ... ok [INFO] [stdout] test popgen::tests::hwe_perfect_equilibrium ... ok [INFO] [stdout] test popgen::tests::fst_multi_locus ... ok [INFO] [stdout] test popgen::tests::diversity_known_pi ... ok [INFO] [stdout] test popgen::tests::fst_unequal_sizes ... ok [INFO] [stdout] test popgen::tests::ld_intermediate ... ok [INFO] [stdout] test popgen::tests::ld_length_mismatch ... ok [INFO] [stdout] test popgen::tests::ld_no_ld ... ok [INFO] [stdout] test popgen::tests::diversity_error_n_lt_2 ... ok [INFO] [stdout] test popgen::tests::ld_perfect ... ok [INFO] [stdout] test popgen::tests::ld_monomorphic_error ... ok [INFO] [stdout] test popgen::tests::hwe_with_missing ... ok [INFO] [stdout] test popgen::tests::pca_basic ... ok [INFO] [stdout] test popgen::tests::pca_empty_error ... ok [INFO] [stdout] test popgen::tests::ld_with_missing ... ok [INFO] [stdout] test popgen::tests::hwe_deficit_het ... ok [INFO] [stdout] test popgen::tests::tajimas_d_negative ... ok [INFO] [stdout] test popgen::tests::pca_missing_imputation ... ok [INFO] [stdout] test popgen::tests::hwe_textbook ... ok [INFO] [stdout] test popgen::tests::tajimas_d_positive ... ok [INFO] [stdout] test popgen::tests::ld_d_prime_vs_r_squared ... ok [INFO] [stdout] test popgen::tests::pca_variance ... ok [INFO] [stdout] test popgen::tests::tajimas_d_neutral ... ok [INFO] [stdout] test popgen::tests::tajimas_d_n_lt_4_error ... ok [INFO] [stdout] test popgen::tests::pca_population_structure ... ok [INFO] [stdout] test popgen::tests::fst_wc_known ... ok [INFO] [stdout] test popgen::tests::tajimas_d_textbook ... ok [INFO] [stdout] test popgen::tests::u8_convenience ... ok [INFO] [stdout] test rank::tests::rank_all_equal ... ok [INFO] [stdout] test rank::tests::rank_average_no_ties ... ok [INFO] [stdout] test popgen::tests::tajimas_d_zero_s_error ... ok [INFO] [stdout] test rank::tests::rank_average_with_ties ... ok [INFO] [stdout] test rank::tests::rank_dense_with_ties ... ok [INFO] [stdout] test rank::tests::rank_max_with_ties ... ok [INFO] [stdout] test rank::tests::rank_ordinal ... ok [INFO] [stdout] test reduction::tests::pca_basic_2d ... ok [INFO] [stdout] test reduction::tests::pca_empty_data_error ... ok [INFO] [stdout] test reduction::tests::pca_single_component ... ok [INFO] [stdout] test rank::tests::rank_empty ... ok [INFO] [stdout] test rank::tests::rank_min_with_ties ... ok [INFO] [stdout] test reduction::tests::pca_mean_centering ... ok [INFO] [stdout] test reduction::tests::pca_too_many_components_error ... ok [INFO] [stdout] test survival::tests::cox_known_hr_recovery ... ok [INFO] [stdout] test survival::tests::cox_multiple_covariates ... ok [INFO] [stdout] test reduction::tests::pca_variance_ratio_sums_near_one ... ok [INFO] [stdout] test survival::tests::cox_null_effect ... ok [INFO] [stdout] test survival::tests::cox_hr_ci_contains_point ... ok [INFO] [stdout] test survival::tests::error_zero_covariates_cox ... ok [INFO] [stdout] test survival::tests::km_all_censored ... ok [INFO] [stdout] test survival::tests::km_median_survival ... ok [INFO] [stdout] test survival::tests::cox_single_binary_covariate ... ok [INFO] [stdout] test survival::tests::error_empty_input ... ok [INFO] [stdout] test survival::tests::error_negative_time ... ok [INFO] [stdout] test survival::tests::km_median_not_reached ... ok [INFO] [stdout] test survival::tests::km_se_non_negative ... ok [INFO] [stdout] test survival::tests::km_monotone_decreasing ... ok [INFO] [stdout] test survival::tests::km_tied_times ... ok [INFO] [stdout] test survival::tests::logrank_no_difference ... ok [INFO] [stdout] test survival::tests::logrank_observed_expected_sum ... ok [INFO] [stdout] test survival::tests::logrank_significant_difference ... ok [INFO] [stdout] test survival::tests::logrank_three_groups ... ok [INFO] [stdout] test survival::tests::logrank_tied_times ... ok [INFO] [stdout] test survival::tests::km_ci_bounds ... ok [INFO] [stdout] test testing::tests::anova_empty_group ... ok [INFO] [stdout] test testing::tests::anova_too_few_groups ... ok [INFO] [stdout] test survival::tests::km_single_censored ... ok [INFO] [stdout] test survival::tests::km_single_event ... ok [INFO] [stdout] test survival::tests::km_with_censoring ... ok [INFO] [stdout] test survival::tests::error_single_group_logrank ... ok [INFO] [stdout] test testing::tests::anova_two_groups_matches_t ... ok [INFO] [stdout] test testing::tests::chi_squared_test_3x3 ... ok [INFO] [stdout] test testing::tests::anova_same_groups ... ok [INFO] [stdout] test testing::tests::anova_different_groups ... ok [INFO] [stdout] test survival::tests::error_mismatched_lengths ... ok [INFO] [stdout] test survival::tests::km_no_censoring ... ok [INFO] [stdout] test testing::tests::chi_squared_test_dependent ... ok [INFO] [stdout] test testing::tests::fisher_exact_extreme ... ok [INFO] [stdout] test enrichment::tests::gsea_nes_sign_matches_es ... ok [INFO] [stdout] test testing::tests::fisher_exact_not_significant ... ok [INFO] [stdout] test testing::tests::mann_whitney_different ... ok [INFO] [stdout] test testing::tests::mann_whitney_same ... ok [INFO] [stdout] test testing::tests::mann_whitney_empty ... ok [INFO] [stdout] test testing::tests::t_test_one_sample_mean_far_from_mu ... ok [INFO] [stdout] test testing::tests::t_test_two_sample_too_few ... ok [INFO] [stdout] test testing::tests::t_test_welch ... ok [INFO] [stdout] test testing::tests::chi_squared_test_independent ... ok [INFO] [stdout] test testing::tests::t_test_one_sample_too_few ... ok [INFO] [stdout] test testing::tests::chi_squared_test_invalid ... ok [INFO] [stdout] test testing::tests::t_test_two_sample_different_means ... ok [INFO] [stdout] test testing::tests::test_result_summary ... ok [INFO] [stdout] test testing::tests::test_result_scored ... ok [INFO] [stdout] test testing::tests::fisher_exact_significant ... ok [INFO] [stdout] test testing::tests::fisher_exact_zero_table ... ok [INFO] [stdout] test testing::tests::t_test_one_sample_mean_equals_mu ... ok [INFO] [stdout] test testing::tests::t_test_two_sample_same_distribution ... ok [INFO] [stdout] test enrichment::tests::gsea_multiple_sets_bh_correction ... ok [INFO] [stdout] test descriptive::proptests::describe_count_equals_length ... ok [INFO] [stdout] test descriptive::proptests::variance_nonnegative ... ok [INFO] [stdout] test descriptive::proptests::range_equals_max_minus_min ... ok [INFO] [stdout] test descriptive::proptests::min_le_mean_le_max ... ok [INFO] [stdout] test descriptive::proptests::median_between_min_and_max ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 384 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.86s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/cyanea_struct-5e732dadb56b25f9) [INFO] [stdout] [INFO] [stdout] running 76 tests [INFO] [stdout] test analysis::tests::empty_structure_error ... ok [INFO] [stdout] test analysis::tests::chain_bfactors_basic ... ok [INFO] [stdout] test analysis::tests::bfactor_stats_std_dev ... ok [INFO] [stdout] test analysis::tests::residue_bfactors_basic ... ok [INFO] [stdout] test analysis::tests::uniform_bfactors_zscore_zero ... ok [INFO] [stdout] test analysis::tests::flexibility_score_basic ... ok [INFO] [stdout] test analysis::tests::multi_chain_bfactors ... ok [INFO] [stdout] test contact::tests::allatom_contact_map ... ok [INFO] [stdout] test contact::tests::ca_contact_map ... ok [INFO] [stdout] test contact::tests::contact_density ... ok [INFO] [stdout] test geometry::tests::test_angle_90 ... ok [INFO] [stdout] test contact::tests::count_contacts_cutoff ... ok [INFO] [stdout] test geometry::tests::test_angle_180 ... ok [INFO] [stdout] test contact::tests::get_distance ... ok [INFO] [stdout] test geometry::tests::test_center_of_mass ... ok [INFO] [stdout] test geometry::tests::test_dihedral ... ok [INFO] [stdout] test geometry::tests::test_distance ... ok [INFO] [stdout] test geometry::tests::test_rmsd_identical ... ok [INFO] [stdout] test geometry::tests::test_rmsd_mismatch_error ... ok [INFO] [stdout] test linalg::tests::test_determinant ... ok [INFO] [stdout] test linalg::tests::test_multiply_identity ... ok [INFO] [stdout] test linalg::tests::test_svd_known_matrix ... ok [INFO] [stdout] test linalg::tests::test_transpose ... ok [INFO] [stdout] test mmcif::tests::parse_loop_helper ... ok [INFO] [stdout] test mmcif::tests::element_symbol_extracted ... ok [INFO] [stdout] test mmcif::tests::parse_minimal_mmcif ... ok [INFO] [stdout] test mmcif::tests::parse_atom_names ... ok [INFO] [stdout] test mmcif::tests::no_atom_site_loop_error ... ok [INFO] [stdout] test mmcif::tests::missing_data_block ... ok [INFO] [stdout] test mmcif::tests::parse_coordinates ... ok [INFO] [stdout] test mmcif::tests::parse_b_factors ... ok [INFO] [stdout] test mmcif::tests::parse_hetatm_records ... ok [INFO] [stdout] test pdb::tests::parse_multi_chain ... ok [INFO] [stdout] test pdb::tests::parse_single_chain ... ok [INFO] [stdout] test mmcif::tests::parse_multi_chain ... ok [INFO] [stdout] test mmcif::tests::parse_residue_info ... ok [INFO] [stdout] test mmcif::tests::quoted_values ... ok [INFO] [stdout] test ramachandran::tests::allowed_region ... ok [INFO] [stdout] test pdb::tests::parse_hetatm ... ok [INFO] [stdout] test ramachandran::tests::glycine_expanded ... ok [INFO] [stdout] test ramachandran::tests::left_handed_helix_favored ... ok [INFO] [stdout] test ramachandran::tests::general_outlier ... ok [INFO] [stdout] test ramachandran::tests::ramachandran_report_empty_structure ... ok [INFO] [stdout] test ramachandran::tests::region_codes ... ok [INFO] [stdout] test ramachandran::tests::proline_restricted ... ok [INFO] [stdout] test secondary::tests::dssp_counts ... ok [INFO] [stdout] test secondary::tests::backbone_dihedral_computation ... ok [INFO] [stdout] test secondary::tests::dssp_empty_chain_error ... ok [INFO] [stdout] test pdb::tests::parse_insertion_codes ... ok [INFO] [stdout] test ramachandran::tests::alpha_helix_favored ... ok [INFO] [stdout] test secondary::tests::dssp_bend_detection ... ok [INFO] [stdout] test ramachandran::tests::beta_sheet_favored ... ok [INFO] [stdout] test ramachandran::tests::ramachandran_report_basic ... ok [INFO] [stdout] test secondary::tests::dssp_assignment_to_simplified ... ok [INFO] [stdout] test secondary::tests::dssp_short_chain_coil ... ok [INFO] [stdout] test ramachandran::tests::pre_proline_shifted ... ok [INFO] [stdout] test secondary::tests::dssp_string_codes ... ok [INFO] [stdout] test secondary::tests::dssp_to_simplified_mapping ... ok [INFO] [stdout] test tests::integration_parse_and_analyze ... ok [INFO] [stdout] test types::tests::atom_backbone_detection ... ok [INFO] [stdout] test types::tests::point3d_cross_product ... ok [INFO] [stdout] test types::tests::point3d_arithmetic ... ok [INFO] [stdout] test secondary::tests::helix_detection ... ok [INFO] [stdout] test secondary::tests::sheet_detection ... ok [INFO] [stdout] test secondary::tests::short_chain_all_coil ... ok [INFO] [stdout] test superposition::tests::align_by_ca ... ok [INFO] [stdout] test superposition::tests::mismatched_lengths_error ... ok [INFO] [stdout] test superposition::tests::identical_points_rmsd_zero ... ok [INFO] [stdout] test superposition::tests::translated_points ... ok [INFO] [stdout] test types::tests::residue_get_alpha_carbon ... ok [INFO] [stdout] test types::tests::structure_summary_and_hash ... ok [INFO] [stdout] test secondary::tests::dssp_helix_chain ... ok [INFO] [stdout] test secondary::tests::dssp_state_codes ... ok [INFO] [stdout] test superposition::tests::rotated_points ... ok [INFO] [stdout] test analysis::tests::flexibility_identifies_flexible_residue ... ok [INFO] [stdout] test pdb::tests::parse_malformed_record ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 76 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/cyanea_wasm-6b2bf8118475bf6d) [INFO] [stdout] [INFO] [stdout] running 222 tests [INFO] [stdout] test align::tests::dna_semiglobal ... ok [INFO] [stdout] test align::tests::dna_local_mismatch ... ok [INFO] [stdout] test align::tests::align_banded_local ... ok [INFO] [stdout] test align::tests::hard_clip_to_soft_conversion ... ok [INFO] [stdout] test align::tests::align_banded_global ... ok [INFO] [stdout] test align::tests::dna_custom_scoring ... ok [INFO] [stdout] test align::tests::dna_global_perfect ... ok [INFO] [stdout] test align::tests::batch_global ... ok [INFO] [stdout] test align::tests::cigar_stats_basic ... ok [INFO] [stdout] test align::tests::empty_sequence ... ok [INFO] [stdout] test align::tests::md_tag_generation ... ok [INFO] [stdout] test align::tests::parse_cigar_valid ... ok [INFO] [stdout] test align::tests::batch_invalid_json ... ok [INFO] [stdout] test align::tests::reverse_cigar_order ... ok [INFO] [stdout] test align::tests::collapse_cigar_eq_x_to_m ... ok [INFO] [stdout] test align::tests::split_cigar_basic ... ok [INFO] [stdout] test align::tests::protein_blosum62 ... ok [INFO] [stdout] test align::tests::alignment_to_cigar_basic ... ok [INFO] [stdout] test align::tests::progressive_msa_basic ... ok [INFO] [stdout] test align::tests::progressive_msa_different ... ok [INFO] [stdout] test align::tests::parse_cigar_invalid ... ok [INFO] [stdout] test align::tests::invalid_matrix ... ok [INFO] [stdout] test align::tests::invalid_mode ... ok [INFO] [stdout] test align::tests::cigar_to_alignment_roundtrip ... ok [INFO] [stdout] test align::tests::poa_consensus_identical ... ok [INFO] [stdout] test align::tests::poa_consensus_majority ... ok [INFO] [stdout] test align::tests::validate_cigar_valid ... ok [INFO] [stdout] test align::tests::merge_cigar_combines ... ok [INFO] [stdout] test align::tests::validate_cigar_invalid ... ok [INFO] [stdout] test chem::tests::canonical_invalid ... ok [INFO] [stdout] test chem::tests::parse_sdf_basic ... ok [INFO] [stdout] test chem::tests::smiles_properties_ethanol ... ok [INFO] [stdout] test chem::tests::smiles_properties_invalid ... ok [INFO] [stdout] test chem::tests::apply_reaction_basic ... ok [INFO] [stdout] test chem::tests::substructure_benzene_in_phenol ... ok [INFO] [stdout] test chem::tests::maccs_fingerprint_benzene ... ok [INFO] [stdout] test chem::tests::embed_conformer_basic ... ok [INFO] [stdout] test chem::tests::gasteiger_charges_basic ... ok [INFO] [stdout] test chem::tests::minimize_uff_basic ... ok [INFO] [stdout] test chem::tests::minimize_mmff94_basic ... ok [INFO] [stdout] test chem::tests::canonical_smiles_deterministic ... ok [INFO] [stdout] test chem::tests::maccs_fingerprint_basic ... ok [INFO] [stdout] test chem::tests::mmff94_energy_basic ... ok [INFO] [stdout] test chem::tests::substructure_no_match ... ok [INFO] [stdout] test chem::tests::parse_sdf_empty ... ok [INFO] [stdout] test chem::tests::tanimoto_different ... ok [INFO] [stdout] test chem::tests::tanimoto_identical ... ok [INFO] [stdout] test chem::tests::tanimoto_maccs_identical ... ok [INFO] [stdout] test chem::tests::uff_energy_basic ... ok [INFO] [stdout] test chem::tests::retrosynthetic_basic ... ok [INFO] [stdout] test chem::tests::fingerprint_nonzero ... ok [INFO] [stdout] test chem::tests::atom_mapping_basic ... ok [INFO] [stdout] test core_utils::tests::sha256_known ... ok [INFO] [stdout] test io::tests::ncbi_fetch_url_basic ... ok [INFO] [stdout] test io::tests::parse_bedgraph_basic ... ok [INFO] [stdout] test error::tests::result_ok_variant ... ok [INFO] [stdout] test io::tests::parse_blast_xml_basic ... ok [INFO] [stdout] test error::tests::result_err_variant ... ok [INFO] [stdout] test error::tests::err_serialization ... ok [INFO] [stdout] test io::tests::parse_gfa_basic ... ok [INFO] [stdout] test io::tests::parse_bed_text_basic ... ok [INFO] [stdout] test io::tests::mpileup_text_from_sam ... ok [INFO] [stdout] test io::tests::depth_stats_from_sam_basic ... ok [INFO] [stdout] test io::tests::parse_gff3_text_basic ... ok [INFO] [stdout] test error::tests::ok_serialization ... ok [INFO] [stdout] test io::tests::parse_vcf_text_multiallelic ... ok [INFO] [stdout] test io::tests::parse_vcf_text_basic ... ok [INFO] [stdout] test ml::tests::cosine_identical ... ok [INFO] [stdout] test io::tests::pileup_from_invalid_sam ... ok [INFO] [stdout] test io::tests::pileup_from_sam_basic ... ok [INFO] [stdout] test ml::tests::confusion_matrix_basic ... ok [INFO] [stdout] test ml::tests::euclidean_known ... ok [INFO] [stdout] test ml::tests::feature_importance_variance_basic ... ok [INFO] [stdout] test ml::tests::cross_validate_rf_basic ... ok [INFO] [stdout] test ml::tests::gbdt_classify_basic ... ok [INFO] [stdout] test chem::tests::embed_conformers_multiple ... ok [INFO] [stdout] test ml::tests::cosine_orthogonal ... ok [INFO] [stdout] test ml::tests::gbdt_regression_basic ... ok [INFO] [stdout] test ml::tests::pr_curve_basic ... ok [INFO] [stdout] test ml::tests::hamming_known ... ok [INFO] [stdout] test ml::tests::gbdt_classify_predictions ... ok [INFO] [stdout] test ml::tests::hmm_likelihood_basic ... ok [INFO] [stdout] test ml::tests::random_forest_basic ... ok [INFO] [stdout] test ml::tests::hmm_viterbi_basic ... ok [INFO] [stdout] test ml::tests::hmm_viterbi_path_valid ... ok [INFO] [stdout] test ml::tests::kmeans_basic ... ok [INFO] [stdout] test ml::tests::kmeans_invalid_data ... ok [INFO] [stdout] test ml::tests::kmer_count_invalid_k ... ok [INFO] [stdout] test ml::tests::kmer_count_k2 ... ok [INFO] [stdout] test ml::tests::manhattan_known ... ok [INFO] [stdout] test ml::tests::pca_basic ... ok [INFO] [stdout] test ml::tests::gbdt_regression_predictions ... ok [INFO] [stdout] test ml::tests::random_forest_importance ... ok [INFO] [stdout] test ml::tests::roc_curve_basic ... ok [INFO] [stdout] test omics::tests::test_cbs_segment_empty ... ok [INFO] [stdout] test omics::tests::test_annotate_variant_intronic ... ok [INFO] [stdout] test omics::tests::test_bisulfite_convert ... ok [INFO] [stdout] test ml::tests::tsne_basic ... ok [INFO] [stdout] test ml::tests::tsne_invalid_data ... ok [INFO] [stdout] test omics::tests::test_find_cpg_islands ... ok [INFO] [stdout] test omics::tests::test_annotate_variant_snv ... ok [INFO] [stdout] test omics::tests::test_gearys_c ... ok [INFO] [stdout] test ml::tests::pca_invalid_data ... ok [INFO] [stdout] test omics::tests::test_intersect_intervals ... ok [INFO] [stdout] test omics::tests::test_complement_intervals ... ok [INFO] [stdout] test omics::tests::test_jaccard_intervals ... ok [INFO] [stdout] test omics::tests::test_liftover_mapped ... ok [INFO] [stdout] test omics::tests::test_make_windows ... ok [INFO] [stdout] test omics::tests::test_liftover_unmapped ... ok [INFO] [stdout] test omics::tests::test_merge_intervals ... ok [INFO] [stdout] test phylo::tests::build_upgma_invalid_json ... ok [INFO] [stdout] test phylo::tests::evolutionary_distance_jc ... ok [INFO] [stdout] test omics::tests::test_closest_intervals ... ok [INFO] [stdout] test omics::tests::test_morans_i_positive ... ok [INFO] [stdout] test phylo::tests::newick_info_invalid ... ok [INFO] [stdout] test phylo::tests::parse_nexus_basic ... ok [INFO] [stdout] test phylo::tests::rf_distance_different ... ok [INFO] [stdout] test omics::tests::test_morans_i_random ... ok [INFO] [stdout] test phylo::tests::simulate_coalescent_basic ... ok [INFO] [stdout] test phylo::tests::simulate_coalescent_growth_basic ... ok [INFO] [stdout] test phylo::tests::rf_distance_identical ... ok [INFO] [stdout] test phylo::tests::rf_distance_different_leaves_error ... ok [INFO] [stdout] test phylo::tests::build_upgma_basic ... ok [INFO] [stdout] test phylo::tests::evolutionary_distance_p ... ok [INFO] [stdout] test phylo::tests::parse_nexus_taxa ... ok [INFO] [stdout] test omics::tests::test_subtract_intervals ... ok [INFO] [stdout] test phylo::tests::build_nj_basic ... ok [INFO] [stdout] test phylo::tests::evolutionary_distance_invalid_model ... ok [INFO] [stdout] test phylo::tests::evolutionary_distance_k2p ... ok [INFO] [stdout] test phylo::tests::newick_info_basic ... ok [INFO] [stdout] test phylo::tests::simulate_coalescent_tree ... ok [INFO] [stdout] test phylo::tests::simulate_evolution_jc69 ... ok [INFO] [stdout] test seq::tests::empty_input_error ... ok [INFO] [stdout] test seq::tests::gc_content_empty ... ok [INFO] [stdout] test seq::tests::json_gc_content ... ok [INFO] [stdout] test seq::tests::assembly_stats_single ... ok [INFO] [stdout] test seq::tests::minhash_compare_different ... ok [INFO] [stdout] test seq::tests::minhash_sketch_invalid_k ... ok [INFO] [stdout] test seq::tests::no_header_error ... ok [INFO] [stdout] test seq::tests::codon_usage_basic ... ok [INFO] [stdout] test phylo::tests::write_nexus_basic ... ok [INFO] [stdout] test seq::tests::gc_content_known ... ok [INFO] [stdout] test seq::tests::parse_fastq_empty_error ... ok [INFO] [stdout] test seq::tests::minhash_compare_identical ... ok [INFO] [stdout] test seq::tests::json_parse_fasta ... ok [INFO] [stdout] test phylo::tests::simulate_evolution_sequences ... ok [INFO] [stdout] test seq::tests::parse_interleaved_fastq_valid ... ok [INFO] [stdout] test seq::tests::mixed_case ... ok [INFO] [stdout] test seq::tests::multi_sequence ... ok [INFO] [stdout] test seq::tests::parse_paired_fastq_matching ... ok [INFO] [stdout] test seq::tests::parse_paired_fastq_relaxed_mismatch ... ok [INFO] [stdout] test seq::tests::parse_paired_fastq_mismatched_count ... ok [INFO] [stdout] test seq::tests::parse_fastq_single_record ... ok [INFO] [stdout] test seq::tests::assembly_stats_basic ... ok [INFO] [stdout] test seq::tests::parse_paired_fastq_strict_missing_suffix ... ok [INFO] [stdout] test seq::tests::parse_paired_fastq_strict_valid ... ok [INFO] [stdout] test seq::tests::protein_properties_basic ... ok [INFO] [stdout] test seq::tests::protein_properties_short ... ok [INFO] [stdout] test seq::tests::reverse_complement_asymmetric ... ok [INFO] [stdout] test seq::tests::rna_fold_nussinov_basic ... ok [INFO] [stdout] test seq::tests::rna_fold_zuker_basic ... ok [INFO] [stdout] test seq::tests::reverse_complement_known ... ok [INFO] [stdout] test seq::tests::rna_fold_nussinov_no_pairs ... ok [INFO] [stdout] test seq::tests::simulate_reads_basic ... ok [INFO] [stdout] test seq::tests::single_sequence ... ok [INFO] [stdout] test seq::tests::transcribe_known ... ok [INFO] [stdout] test seq::tests::trim_fastq_filters_short ... ok [INFO] [stdout] test seq::tests::rna_fold_zuker_pairs ... ok [INFO] [stdout] test seq::tests::validate_dna_invalid ... ok [INFO] [stdout] test seq::tests::trim_paired_fastq_both_pass ... ok [INFO] [stdout] test seq::tests::validate_dna_ok ... ok [INFO] [stdout] test seq::tests::trim_paired_fastq_survival_rate ... ok [INFO] [stdout] test seq::tests::translate_known ... ok [INFO] [stdout] test seq::tests::trim_paired_fastq_invalid_policy ... ok [INFO] [stdout] test seq::tests::validate_unknown_alphabet ... ok [INFO] [stdout] test stats::tests::benjamini_hochberg_known ... ok [INFO] [stdout] test stats::tests::bonferroni_known ... ok [INFO] [stdout] test seq::tests::trim_paired_fastq_both_fail ... ok [INFO] [stdout] test seq::tests::minhash_sketch_basic ... ok [INFO] [stdout] test stats::tests::bootstrap_ci_basic ... ok [INFO] [stdout] test seq::tests::trim_fastq_basic ... ok [INFO] [stdout] test seq::tests::validate_protein_ok ... ok [INFO] [stdout] test stats::tests::bray_curtis_basic ... ok [INFO] [stdout] test stats::tests::cox_ph_basic ... ok [INFO] [stdout] test stats::tests::describe_empty_error ... ok [INFO] [stdout] test stats::tests::describe_invalid_json ... ok [INFO] [stdout] test seq::tests::parse_interleaved_fastq_odd_count ... ok [INFO] [stdout] test stats::tests::describe_known_data ... ok [INFO] [stdout] test seq::tests::trim_paired_fastq_one_fails_drop_both ... ok [INFO] [stdout] test seq::tests::parse_paired_fastq_none_no_validation ... ok [INFO] [stdout] test stats::tests::fst_hudson_basic ... ok [INFO] [stdout] test stats::tests::kaplan_meier_all_events ... ok [INFO] [stdout] test stats::tests::kaplan_meier_basic ... ok [INFO] [stdout] test stats::tests::log_rank_test_basic ... ok [INFO] [stdout] test stats::tests::pearson_mismatched_lengths ... ok [INFO] [stdout] test stats::tests::mann_whitney_known ... ok [INFO] [stdout] test stats::tests::spearman_perfect_rank ... ok [INFO] [stdout] test struct_bio::tests::contact_map_tight_cutoff ... ok [INFO] [stdout] test stats::tests::wright_fisher_basic ... ok [INFO] [stdout] test stats::tests::permutation_test_basic ... ok [INFO] [stdout] test stats::tests::t_test_known ... ok [INFO] [stdout] test struct_bio::tests::kabsch_align_identical ... ok [INFO] [stdout] test stats::tests::pearson_positive ... ok [INFO] [stdout] test stats::tests::tajimas_d_basic ... ok [INFO] [stdout] test struct_bio::tests::contact_map_basic ... ok [INFO] [stdout] test stats::tests::simpson_index_basic ... ok [INFO] [stdout] test stats::tests::t_test_two_sample_known ... ok [INFO] [stdout] test struct_bio::tests::pdb_info_basic ... ok [INFO] [stdout] test stats::tests::shannon_index_basic ... ok [INFO] [stdout] test struct_bio::tests::rmsd_invalid_json ... ok [INFO] [stdout] test struct_bio::tests::kabsch_align_translated ... ok [INFO] [stdout] test struct_bio::tests::ramachandran_basic ... ok [INFO] [stdout] test struct_bio::tests::rmsd_mismatched_lengths ... ok [INFO] [stdout] test struct_bio::tests::pdb_info_invalid ... ok [INFO] [stdout] test struct_bio::tests::rmsd_identical ... ok [INFO] [stdout] test tests::reexports_accessible ... ok [INFO] [stdout] test tests::version_is_set ... ok [INFO] [stdout] test struct_bio::tests::rmsd_different ... ok [INFO] [stdout] test struct_bio::tests::secondary_structure_basic ... ok [INFO] [stdout] test struct_bio::tests::parse_mmcif_basic ... ok [INFO] [stdout] test struct_bio::tests::ramachandran_regions ... ok [INFO] [stdout] test omics::tests::test_cbs_segment_basic ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 222 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.12s [INFO] [stdout] [INFO] [stderr] Doc-tests cyanea_align [INFO] [stdout] [INFO] [stdout] running 8 tests [INFO] [stdout] test cyanea-align/src/cigar.rs - cigar (line 7) ... ok [INFO] [stdout] test cyanea-align/src/msa.rs - msa (line 10) ... ok [INFO] [stdout] test cyanea-align/src/lcsk.rs - lcsk (line 21) ... ok [INFO] [stdout] test cyanea-align/src/lcsk.rs - lcsk::sparse_align (line 325) ... ok [INFO] [stdout] test cyanea-align/src/poa.rs - poa (line 13) ... ok [INFO] [stdout] test cyanea-align/src/wfa.rs - wfa (line 12) ... ok [INFO] [stdout] test cyanea-align/src/profile_hmm.rs - profile_hmm (line 20) ... ok [INFO] [stdout] test cyanea-align/src/lib.rs - (line 9) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.95s [INFO] [stdout] [INFO] [stderr] Doc-tests cyanea_benchmarks [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests cyanea_chem [INFO] [stdout] [INFO] [stdout] running 7 tests [INFO] [stdout] test cyanea-chem/src/lib.rs - (line 9) ... ok [INFO] [stdout] test cyanea-chem/src/reaction.rs - reaction::apply_reaction (line 117) ... ok [INFO] [stdout] test cyanea-chem/src/reaction.rs - reaction::parse_reaction (line 69) ... ok [INFO] [stdout] test cyanea-chem/src/reaction.rs - reaction::retrosynthetic_disconnections (line 480) ... ok [INFO] [stdout] test cyanea-chem/src/canon.rs - canon (line 8) ... ok [INFO] [stdout] test cyanea-chem/src/gasteiger.rs - gasteiger::gasteiger_charges (line 99) ... ok [INFO] [stdout] test cyanea-chem/src/maccs.rs - maccs::maccs_fingerprint (line 56) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 1.00s [INFO] [stdout] [INFO] [stderr] Doc-tests cyanea_core [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests cyanea_gpu [INFO] [stdout] [INFO] [stdout] running 2 tests [INFO] [stdout] test cyanea-gpu/src/lib.rs - (line 21) ... ok [INFO] [stdout] test cyanea-gpu/src/lib.rs - (line 10) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.41s [INFO] [stdout] [INFO] [stderr] Doc-tests cyanea_io [INFO] [stdout] [INFO] [stdout] running 7 tests [INFO] [stdout] test cyanea-io/src/bedgraph.rs - bedgraph::parse_bedgraph_str (line 36) ... ok [INFO] [stdout] test cyanea-io/src/fetch.rs - fetch::UniprotUrl::entry (line 143) ... ok [INFO] [stdout] test cyanea-io/src/gfa.rs - gfa::parse_gfa_str (line 101) ... ok [INFO] [stdout] test cyanea-io/src/gfa.rs - gfa::write_gfa_string (line 248) ... ok [INFO] [stdout] test cyanea-io/src/bedgraph.rs - bedgraph::write_bedgraph_string (line 109) ... ok [INFO] [stdout] test cyanea-io/src/gfa.rs - gfa::gfa_stats (line 307) ... ok [INFO] [stdout] test cyanea-io/src/fetch.rs - fetch::EntrezUrl::esearch (line 41) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 1.40s [INFO] [stdout] [INFO] [stderr] Doc-tests cyanea_ml [INFO] [stdout] [INFO] [stdout] running 4 tests [INFO] [stdout] test cyanea-ml/src/gbdt.rs - gbdt (line 13) ... ok [INFO] [stdout] test cyanea-ml/src/hmm.rs - hmm (line 12) ... ok [INFO] [stdout] test cyanea-ml/src/lib.rs - (line 9) ... ok [INFO] [stdout] test cyanea-ml/src/feature_selection.rs - feature_selection (line 13) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.74s [INFO] [stdout] [INFO] [stderr] Doc-tests cyanea_omics [INFO] [stdout] [INFO] [stdout] running 2 tests [INFO] [stdout] test cyanea-omics/src/single_cell.rs - single_cell (line 16) ... ok [INFO] [stdout] test cyanea-omics/src/lib.rs - (line 14) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.48s [INFO] [stdout] [INFO] [stderr] Doc-tests cyanea_phylo [INFO] [stdout] [INFO] [stdout] running 5 tests [INFO] [stdout] test cyanea-phylo/src/nexus.rs - nexus (line 11) ... ok [INFO] [stdout] test cyanea-phylo/src/simulation.rs - simulation::simulate_evolution (line 97) ... ok [INFO] [stdout] test cyanea-phylo/src/simulation.rs - simulation::simulate_coalescent (line 236) ... ok [INFO] [stdout] test cyanea-phylo/src/simulation.rs - simulation::simulate_coalescent_growth (line 356) ... ok [INFO] [stdout] test cyanea-phylo/src/lib.rs - (line 10) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.83s [INFO] [stdout] [INFO] [stderr] Doc-tests cyanea_seq [INFO] [stdout] [INFO] [stdout] running 26 tests [INFO] [stdout] test cyanea-seq/src/paired.rs - paired (line 8) - compile ... ok [INFO] [stdout] test cyanea-seq/src/protein_properties.rs - protein_properties::isoelectric_point (line 451) ... ok [INFO] [stdout] test cyanea-seq/src/fmd_index.rs - fmd_index::FmdIndex::new (line 165) ... ok [INFO] [stdout] test cyanea-seq/src/fm_index.rs - fm_index::FmIndex::build (line 51) ... ok [INFO] [stdout] test cyanea-seq/src/protein_properties.rs - protein_properties::hydrophobicity_profile (line 345) ... ok [INFO] [stdout] test cyanea-seq/src/protein_properties.rs - protein_properties::gravy (line 403) ... ok [INFO] [stdout] test cyanea-seq/src/protein_properties.rs - protein_properties::gor (line 750) ... ok [INFO] [stdout] test cyanea-seq/src/protein_properties.rs - protein_properties::amino_acid_composition (line 300) ... ok [INFO] [stdout] test cyanea-seq/src/protein_properties.rs - protein_properties::chou_fasman (line 569) ... ok [INFO] [stdout] test cyanea-seq/src/bwt.rs - bwt::Bwt::invert (line 94) ... ok [INFO] [stdout] test cyanea-seq/src/bwt.rs - bwt::Bwt::build (line 26) ... ok [INFO] [stdout] test cyanea-seq/src/protein_properties.rs - protein_properties::predict_disorder (line 854) ... ok [INFO] [stdout] test cyanea-seq/src/lib.rs - (line 16) ... ok [INFO] [stdout] test cyanea-seq/src/rna_structure.rs - rna_structure::RnaSecondaryStructure::to_dot_bracket (line 259) ... ok [INFO] [stdout] test cyanea-seq/src/minhash.rs - minhash (line 22) ... ok [INFO] [stdout] test cyanea-seq/src/trim.rs - trim::TrimPipeline (line 372) ... ok [INFO] [stdout] test cyanea-seq/src/rna_structure.rs - rna_structure::mccaskill (line 850) ... ok [INFO] [stdout] test cyanea-seq/src/rna_structure.rs - rna_structure::RnaSecondaryStructure::from_dot_bracket (line 217) ... ok [INFO] [stdout] test cyanea-seq/src/rna_structure.rs - rna_structure::base_pair_distance (line 1035) ... ok [INFO] [stdout] test cyanea-seq/src/protein_properties.rs - protein_properties::extinction_coefficient (line 486) ... ok [INFO] [stdout] test cyanea-seq/src/rna_structure.rs - rna_structure::zuker_mfe (line 467) ... ok [INFO] [stdout] test cyanea-seq/src/suffix.rs - suffix::SuffixArray::build (line 301) ... ok [INFO] [stdout] test cyanea-seq/src/rna_structure.rs - rna_structure::mountain_distance (line 1073) ... ok [INFO] [stdout] test cyanea-seq/src/twobit.rs - twobit::TwoBitSequence::encode (line 64) ... ok [INFO] [stdout] test cyanea-seq/src/rna_structure.rs - rna_structure::nussinov (line 333) ... ok [INFO] [stdout] test cyanea-seq/src/trim.rs - trim (line 14) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 26 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 2.17s [INFO] [stdout] [INFO] [stderr] Doc-tests cyanea_stats [INFO] [stdout] [INFO] [stdout] running 12 tests [INFO] [stdout] test cyanea-stats/src/survival.rs - survival::cox_ph (line 566) ... ok [INFO] [stdout] test cyanea-stats/src/enrichment.rs - enrichment::ora (line 66) ... ok [INFO] [stdout] test cyanea-stats/src/null_model.rs - null_model::wright_fisher (line 106) ... ok [INFO] [stdout] test cyanea-stats/src/survival.rs - survival::kaplan_meier (line 284) ... ok [INFO] [stdout] test cyanea-stats/src/null_model.rs - null_model::permutation_null (line 181) ... ok [INFO] [stdout] test cyanea-stats/src/enrichment.rs - enrichment::go_enrichment (line 619) ... ok [INFO] [stdout] test cyanea-stats/src/enrichment.rs - enrichment::gsea_preranked (line 227) ... ok [INFO] [stdout] test cyanea-stats/src/survival.rs - survival::log_rank_test (line 434) ... ok [INFO] [stdout] test cyanea-stats/src/lib.rs - (line 21) ... ok [INFO] [stdout] test cyanea-stats/src/combinatorics.rs - combinatorics::combinations (line 124) ... ok [INFO] [stdout] test cyanea-stats/src/null_model.rs - null_model::bootstrap_null (line 251) ... ok [INFO] [stdout] test cyanea-stats/src/survival.rs - survival (line 15) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 12 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 1.02s [INFO] [stdout] [INFO] [stderr] Doc-tests cyanea_struct [INFO] [stdout] [INFO] [stdout] running 2 tests [INFO] [stdout] test cyanea-struct/src/lib.rs - (line 14) ... ok [INFO] [stdout] test cyanea-struct/src/mmcif.rs - mmcif (line 9) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.57s [INFO] [stdout] [INFO] [stderr] Doc-tests cyanea_wasm [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test cyanea-wasm/src/lib.rs - (line 26) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.88s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "318c6898146efc786500fb25dadb9db21db260ebf076863f3ec50808c91e80f0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "318c6898146efc786500fb25dadb9db21db260ebf076863f3ec50808c91e80f0", kill_on_drop: false }` [INFO] [stdout] 318c6898146efc786500fb25dadb9db21db260ebf076863f3ec50808c91e80f0