[INFO] fetching crate alignoth 1.5.0...
[INFO] testing alignoth-1.5.0 against master#d933cf483edf1605142ac6899ff32536c0ad8b22 for pr-150933
[INFO] extracting crate alignoth 1.5.0 into /workspace/builds/worker-4-tc1/source
[INFO] started tweaking crates.io crate alignoth 1.5.0
[INFO] finished tweaking crates.io crate alignoth 1.5.0
[INFO] tweaked toml for crates.io crate alignoth 1.5.0 written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate alignoth 1.5.0 on toolchain d933cf483edf1605142ac6899ff32536c0ad8b22
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d933cf483edf1605142ac6899ff32536c0ad8b22" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate alignoth 1.5.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d933cf483edf1605142ac6899ff32536c0ad8b22" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:cfa559dde23f44738f9990739aaa3487d8df3af37eb5df0572f7cf76004a604a" "/opt/rustwide/cargo-home/bin/cargo" "+d933cf483edf1605142ac6899ff32536c0ad8b22" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ada8fcd3dfecdbb0572c632cb52dfd374f86768883e5ccc0a63bc661fdb0df1f
[INFO] running `Command { std: "docker" "start" "-a" "ada8fcd3dfecdbb0572c632cb52dfd374f86768883e5ccc0a63bc661fdb0df1f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ada8fcd3dfecdbb0572c632cb52dfd374f86768883e5ccc0a63bc661fdb0df1f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ada8fcd3dfecdbb0572c632cb52dfd374f86768883e5ccc0a63bc661fdb0df1f", kill_on_drop: false }`
[INFO] [stdout] ada8fcd3dfecdbb0572c632cb52dfd374f86768883e5ccc0a63bc661fdb0df1f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:cfa559dde23f44738f9990739aaa3487d8df3af37eb5df0572f7cf76004a604a" "/opt/rustwide/cargo-home/bin/cargo" "+d933cf483edf1605142ac6899ff32536c0ad8b22" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f5fd574a93dc02817b489a50e9c2b3352571a2f1e3c9f04c6a426f6c413e258f
[INFO] running `Command { std: "docker" "start" "-a" "f5fd574a93dc02817b489a50e9c2b3352571a2f1e3c9f04c6a426f6c413e258f", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.172
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[INFO] [stderr]    Compiling bio v2.3.0
[INFO] [stderr]    Compiling rust-htslib v0.51.0
[INFO] [stderr]    Compiling alignoth v1.5.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: use of deprecated method `rand::prelude::IteratorRandom::choose_multiple`: Renamed to `sample`
[INFO] [stdout]    --> src/plot.rs:702:22
[INFO] [stdout]     |
[INFO] [stdout] 702 |                     .choose_multiple(&mut rng, max_read_depth)
[INFO] [stdout]     |                      ^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 14s
[INFO] running `Command { std: "docker" "inspect" "f5fd574a93dc02817b489a50e9c2b3352571a2f1e3c9f04c6a426f6c413e258f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f5fd574a93dc02817b489a50e9c2b3352571a2f1e3c9f04c6a426f6c413e258f", kill_on_drop: false }`
[INFO] [stdout] f5fd574a93dc02817b489a50e9c2b3352571a2f1e3c9f04c6a426f6c413e258f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:cfa559dde23f44738f9990739aaa3487d8df3af37eb5df0572f7cf76004a604a" "/opt/rustwide/cargo-home/bin/cargo" "+d933cf483edf1605142ac6899ff32536c0ad8b22" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 608d08719d51d563102d9b49896eb3736d844760c56df0e4b90b2a1861f4812d
[INFO] running `Command { std: "docker" "start" "-a" "608d08719d51d563102d9b49896eb3736d844760c56df0e4b90b2a1861f4812d", kill_on_drop: false }`
[INFO] [stderr]    Compiling alignoth v1.5.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: use of deprecated method `rand::prelude::IteratorRandom::choose_multiple`: Renamed to `sample`
[INFO] [stdout]    --> src/plot.rs:702:22
[INFO] [stdout]     |
[INFO] [stdout] 702 |                     .choose_multiple(&mut rng, max_read_depth)
[INFO] [stdout]     |                      ^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 3.23s
[INFO] running `Command { std: "docker" "inspect" "608d08719d51d563102d9b49896eb3736d844760c56df0e4b90b2a1861f4812d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "608d08719d51d563102d9b49896eb3736d844760c56df0e4b90b2a1861f4812d", kill_on_drop: false }`
[INFO] [stdout] 608d08719d51d563102d9b49896eb3736d844760c56df0e4b90b2a1861f4812d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:cfa559dde23f44738f9990739aaa3487d8df3af37eb5df0572f7cf76004a604a" "/opt/rustwide/cargo-home/bin/cargo" "+d933cf483edf1605142ac6899ff32536c0ad8b22" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 54298f614ff186a73190a970075de2fb1a6d199f57b4733c563363682c01ab5c
[INFO] running `Command { std: "docker" "start" "-a" "54298f614ff186a73190a970075de2fb1a6d199f57b4733c563363682c01ab5c", kill_on_drop: false }`
[INFO] [stderr] warning: use of deprecated method `rand::prelude::IteratorRandom::choose_multiple`: Renamed to `sample`
[INFO] [stderr]    --> src/plot.rs:702:22
[INFO] [stderr]     |
[INFO] [stderr] 702 |                     .choose_multiple(&mut rng, max_read_depth)
[INFO] [stderr]     |                      ^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(deprecated)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `alignoth` (bin "alignoth" test) generated 1 warning
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.31s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/alignoth-8bb8e63a1470771b)
[INFO] [stdout] 
[INFO] [stdout] running 33 tests
[INFO] [stdout] test cli::tests::test_region_length ... ok
[INFO] [stdout] test highlight::tests::test_bed_intervals ... ok
[INFO] [stdout] test cli::tests::test_around_deserialization ... ok
[INFO] [stdout] test cli::tests::test_region_deserialization ... ok
[INFO] [stdout] test cli::tests::test_data_format_to_string ... ok
[INFO] [stdout] test highlight::tests::test_vcf_intervals ... ok
[INFO] [stdout] test plot::tests::test_aux_record ... ok
[INFO] [stdout] test cli::tests::test_interval_deserialization ... ok
[INFO] [stdout] test plot::tests::test_empty_aux_record ... ok
[INFO] [stdout] test plot::tests::test_fetch_reference ... ok
[INFO] [stdout] test plot::tests::test_create_plot_data ... ok
[INFO] [stdout] test plot::tests::test_aux_record_to_string ... ok
[INFO] [stdout] test cli::tests::test_data_format_deserialization ... ok
[INFO] [stdout] test highlight::tests::test_vcf_interval_out_of_bounds ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_deletion ... ok
[INFO] [stdout] test plot::tests::test_filter_mismatches ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_from_str ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_insertion ... ok
[INFO] [stdout] test plot::tests::test_matching_bases ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_match ... ok
[INFO] [stdout] test plot::tests::test_read_ordering_with_max_read_depth ... ok
[INFO] [stdout] test cli::tests::test_region_from_around ... ok
[INFO] [stdout] test utils::tests::test_get_fasta_length ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_string_serialization ... ok
[INFO] [stdout] test utils::tests::test_ellipsis ... ok
[INFO] [stdout] test utils::tests::test_get_ref_and_bam_from_empty_cwd ... ok
[INFO] [stdout] test plot::tests::test_read_ordering ... ok
[INFO] [stdout] test plot::tests::test_coverage_from_reads_basic_overlap ... ok
[INFO] [stdout] test utils::tests::test_get_fasta_contigs ... ok
[INFO] [stdout] test tests::test_write_files ... ok
[INFO] [stdout] test plot::tests::test_read_position_with_softclips ... ok
[INFO] [stdout] test plot::tests::test_create_plot_data_with_clipped_read ... ok
[INFO] [stdout] test plot::tests::test_create_plot_data_2 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 33 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 1.70s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "54298f614ff186a73190a970075de2fb1a6d199f57b4733c563363682c01ab5c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "54298f614ff186a73190a970075de2fb1a6d199f57b4733c563363682c01ab5c", kill_on_drop: false }`
[INFO] [stdout] 54298f614ff186a73190a970075de2fb1a6d199f57b4733c563363682c01ab5c